Wall clock time and date at job start Mon Mar 30 2020 01:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35678 * 116.99500 * 2 1 4 4 C 1.37933 * 120.19560 * 359.97438 * 3 2 1 5 5 C 1.39678 * 119.93272 * 180.02562 * 4 3 2 6 6 C 1.47936 * 119.84216 * 179.97438 * 5 4 3 7 7 C 1.39657 * 120.08720 * 359.71320 * 6 5 4 8 8 C 1.37781 * 119.91488 * 179.76920 * 7 6 5 9 9 C 1.38945 * 120.08777 * 0.51457 * 8 7 6 10 10 O 1.35818 * 119.91721 * 179.76694 * 9 8 7 11 11 C 1.38951 * 120.16876 * 359.74117 * 9 8 7 12 12 C 1.37785 * 120.08315 * 0.02562 * 11 9 8 13 13 C 1.40122 * 120.31457 * 359.97438 * 5 4 3 14 14 C 1.36092 * 120.38811 * 359.71355 * 13 5 4 15 15 C 1.40929 * 120.05990 * 0.56868 * 14 13 5 16 16 C 1.40819 * 120.15425 * 179.71056 * 15 14 13 17 17 H 1.08005 * 119.99421 * 208.78901 * 16 15 14 18 18 C 1.39959 * 120.00027 * 28.78471 * 16 15 14 19 19 N 1.30867 * 119.99952 * 197.90843 * 18 16 15 20 20 Si 1.86802 * 120.00226 * 17.91549 * 18 16 15 21 21 H 1.48496 * 109.46645 * 269.99390 * 20 18 16 22 22 H 1.48499 * 109.47129 * 29.99632 * 20 18 16 23 23 H 1.48503 * 109.47167 * 149.99848 * 20 18 16 24 24 H 1.09004 * 109.47135 * 299.99508 * 1 2 3 25 25 H 1.09002 * 109.47172 * 59.99904 * 1 2 3 26 26 H 1.09006 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.03059 * 0.03346 * 4 3 2 28 28 H 1.08000 * 120.03949 * 0.03531 * 7 6 5 29 29 H 1.07997 * 119.96121 * 180.23399 * 8 7 6 30 30 H 0.96708 * 113.99455 * 269.97601 * 10 9 8 31 31 H 1.07996 * 119.95820 * 179.97438 * 11 9 8 32 32 H 1.08004 * 120.03977 * 180.02562 * 12 11 9 33 33 H 1.08003 * 119.80498 * 180.02562 * 13 5 4 34 34 H 1.07996 * 119.97219 * 180.29804 * 14 13 5 35 35 H 0.96995 * 119.99817 * 355.44571 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2975 2.3683 -0.0005 5 6 1.9372 3.6099 -0.0011 6 6 1.1337 4.8520 -0.0022 7 6 -0.2612 4.7835 -0.0088 8 6 -1.0061 5.9426 -0.0050 9 6 -0.3714 7.1786 -0.0055 10 8 -1.1091 8.3189 -0.0066 11 6 1.0162 7.2509 -0.0043 12 6 1.7680 6.0963 -0.0032 13 6 3.3364 3.6846 -0.0005 14 6 4.0865 2.5491 0.0064 15 6 3.4578 1.2878 0.0010 16 6 4.2320 0.1115 0.0020 17 1 3.8461 -0.7892 -0.4521 18 6 5.5015 0.1098 0.5913 19 7 6.3564 -0.8375 0.3009 20 14 5.9756 1.4596 1.7924 21 1 6.5944 2.5873 1.0506 22 1 4.7623 1.9398 2.5014 23 1 6.9469 0.9246 2.7802 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2188 2.3159 -0.0004 28 1 -0.7553 3.8232 -0.0125 29 1 -2.0848 5.8904 -0.0063 30 1 -1.3220 8.6488 -0.8904 31 1 1.5061 8.2134 -0.0051 32 1 2.8466 6.1533 -0.0019 33 1 3.8225 4.6491 -0.0005 34 1 5.1644 2.6145 0.0116 35 1 6.0885 -1.5740 -0.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241063111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:03 Heat of formation + Delta-G solvation = -61.545707 kcal Electronic energy + Delta-G solvation = -19568.890701 eV Core-core repulsion = 16495.963884 eV Total energy + Delta-G solvation = -3072.926817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99847 -40.21708 -38.36849 -37.34417 -35.63284 -32.96391 -32.14518 -30.77046 -29.91248 -28.17073 -26.23072 -24.13405 -23.51386 -22.39104 -21.71355 -20.17629 -19.31313 -18.71469 -17.18568 -16.83260 -16.42571 -16.32518 -16.07225 -15.99933 -15.86087 -15.04621 -14.89326 -14.56568 -14.19642 -13.97471 -13.78021 -13.21480 -13.09136 -12.93379 -12.67196 -12.42977 -12.27177 -12.10634 -11.76205 -11.58066 -11.40094 -11.17084 -10.93082 -10.11966 -9.91350 -9.42624 -9.17113 -8.74274 -6.43052 -0.10682 0.48458 0.83922 1.01367 1.36810 1.56042 1.76702 2.16394 2.49928 2.75795 2.93281 3.38497 3.48911 3.90203 3.96434 4.07422 4.19407 4.33859 4.39101 4.41266 4.53932 4.54957 4.67540 4.79452 4.88374 5.02713 5.07773 5.17341 5.31174 5.40655 5.50528 5.53024 5.60157 5.70425 5.97638 6.00288 6.04993 6.25052 6.41237 6.65077 6.93648 7.03075 7.95057 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.023584 B = 0.005305 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.978346 B = 5276.652620 C = 6283.918333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.343 6.343 3 C 0.008 3.992 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.027 4.027 7 C -0.123 4.123 8 C -0.139 4.139 9 C 0.078 3.922 10 O -0.508 6.508 11 C -0.138 4.138 12 C -0.122 4.122 13 C -0.084 4.084 14 C -0.235 4.235 15 C 0.059 3.941 16 C -0.522 4.522 17 H 0.045 0.955 18 C 0.009 3.991 19 N -0.838 5.838 20 Si 1.104 2.896 21 H -0.249 1.249 22 H -0.265 1.265 23 H -0.280 1.280 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.407 0.593 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 13.450 -0.873 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.258 6.258 3 C -0.036 4.036 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.027 4.027 7 C -0.141 4.141 8 C -0.157 4.157 9 C 0.033 3.967 10 O -0.321 6.321 11 C -0.156 4.156 12 C -0.140 4.140 13 C -0.102 4.102 14 C -0.254 4.254 15 C 0.056 3.944 16 C -0.551 4.551 17 H 0.063 0.937 18 C -0.205 4.205 19 N -0.461 5.461 20 Si 0.924 3.076 21 H -0.174 1.174 22 H -0.189 1.189 23 H -0.207 1.207 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.162 0.838 30 H 0.265 0.735 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.423 13.644 0.585 17.179 hybrid contribution -1.340 -1.413 -1.787 2.643 sum -11.763 12.231 -1.202 17.012 Atomic orbital electron populations 1.23156 0.78222 1.04454 1.01364 1.85966 1.21884 1.27831 1.90099 1.19255 0.92060 0.84193 1.08110 1.21078 0.99230 0.91165 1.05493 1.18246 0.92512 0.91451 1.12890 1.18949 0.93233 0.92235 0.98301 1.21214 0.92733 0.98816 1.01377 1.21465 1.01059 0.91415 1.01783 1.18586 0.89672 0.85889 1.02507 1.84752 1.72604 1.39402 1.35295 1.21494 0.93293 0.99232 1.01621 1.21296 1.00731 0.91036 1.00924 1.20747 0.93062 0.97782 0.98598 1.20739 0.99206 0.91842 1.13661 1.17531 0.89748 0.93925 0.93164 1.20411 1.02427 0.97580 1.34695 0.93673 1.28406 0.91295 1.02880 0.97878 1.70613 1.35214 1.10346 1.29973 0.83234 0.77183 0.72673 0.74468 1.17386 1.18944 1.20663 0.92480 0.92543 0.87194 0.84676 0.85257 0.83820 0.73474 0.83717 0.84661 0.84803 0.86692 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.82 16 2 O -0.34 -15.62 9.82 -89.96 -0.88 -16.50 16 3 C 0.01 0.39 6.71 23.01 0.15 0.55 16 4 C -0.15 -6.06 8.40 22.55 0.19 -5.87 16 5 C -0.15 -5.79 5.89 -19.90 -0.12 -5.91 16 6 C -0.03 -0.87 5.88 -20.02 -0.12 -0.99 16 7 C -0.12 -3.44 9.42 22.50 0.21 -3.23 16 8 C -0.14 -3.31 9.97 22.33 0.22 -3.08 16 9 C 0.08 1.82 6.71 22.61 0.15 1.97 16 10 O -0.51 -9.72 13.49 -91.51 -1.23 -10.95 16 11 C -0.14 -3.29 9.97 22.33 0.22 -3.07 16 12 C -0.12 -3.40 9.42 22.51 0.21 -3.18 16 13 C -0.08 -3.37 9.34 22.23 0.21 -3.16 16 14 C -0.24 -10.97 7.20 22.43 0.16 -10.81 16 15 C 0.06 3.10 5.15 -21.18 -0.11 2.99 16 16 C -0.52 -29.84 9.04 23.32 0.21 -29.63 16 17 H 0.04 2.80 7.87 -2.91 -0.02 2.78 16 18 C 0.01 0.49 5.41 85.25 0.46 0.95 16 19 N -0.84 -46.88 13.66 21.83 0.30 -46.59 16 20 Si 1.10 48.80 24.90 68.60 1.71 50.51 16 21 H -0.25 -9.84 6.43 99.48 0.64 -9.20 16 22 H -0.26 -11.69 7.04 99.48 0.70 -10.99 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H 0.06 1.58 7.66 -2.38 -0.02 1.56 16 25 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 26 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 27 H 0.14 4.49 4.40 -2.91 -0.01 4.48 16 28 H 0.13 3.31 6.17 -2.91 -0.02 3.29 16 29 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.41 3.63 9.06 -74.05 -0.67 2.96 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 32 H 0.14 3.44 6.17 -2.91 -0.02 3.42 16 33 H 0.13 4.41 6.16 -2.91 -0.02 4.39 16 34 H 0.12 5.23 4.38 -2.91 -0.01 5.21 16 35 H 0.28 15.50 8.73 -92.71 -0.81 14.69 16 Total: -1.00 -66.44 293.30 3.42 -63.01 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.36 Total: 21.17 kcal Atomic # 6 Polarization: -63.83 SS G_CDS: 3.17 Total: -60.66 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.30 Total: -46.59 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -2.12 Total: -27.45 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.71 Total: 50.51 kcal Total: -66.44 3.42 -63.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241063111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.468 kcal (2) G-P(sol) polarization free energy of solvation -66.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds