Wall clock time and date at job start Mon Mar 30 2020 01:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86797 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47202 * 269.99927 * 3 2 1 5 5 H 1.48505 * 109.47425 * 30.00070 * 3 2 1 6 6 H 1.48503 * 109.47359 * 149.99869 * 3 2 1 7 7 C 1.38657 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00278 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99486 * 359.97438 * 7 2 1 10 10 C 1.35717 * 116.99499 * 185.05286 * 9 7 2 11 11 C 1.39426 * 120.38963 * 354.52547 * 10 9 7 12 12 C 1.38219 * 118.45593 * 179.72628 * 11 10 9 13 13 C 1.39434 * 119.14600 * 0.24587 * 12 11 10 14 14 C 1.48287 * 119.65129 * 180.02562 * 13 12 11 15 15 C 1.39398 * 120.12258 * 359.72025 * 14 13 12 16 16 C 1.38000 * 119.86553 * 179.79202 * 15 14 13 17 17 C 1.38331 * 120.12835 * 0.48922 * 16 15 14 18 18 C 1.50704 * 119.87126 * 179.76562 * 17 16 15 19 19 N 1.46895 * 109.47376 * 269.97737 * 18 17 16 20 20 C 1.38332 * 120.25600 * 359.74107 * 17 16 15 21 21 C 1.38003 * 120.12661 * 0.02798 * 20 17 16 22 22 N 1.32687 * 120.69568 * 359.97438 * 13 12 11 23 23 C 1.31661 * 121.68726 * 0.02562 * 22 13 12 24 24 H 0.96998 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.76880 * 359.97438 * 11 10 9 26 26 H 1.07998 * 120.42915 * 180.27367 * 12 11 10 27 27 H 1.07995 * 120.06640 * 0.02698 * 15 14 13 28 28 H 1.08004 * 119.93312 * 180.23453 * 16 15 14 29 29 H 1.09001 * 109.47536 * 29.98075 * 18 17 16 30 30 H 1.09003 * 109.47268 * 149.97938 * 18 17 16 31 31 H 1.00893 * 111.00482 * 180.02562 * 19 18 17 32 32 H 1.00901 * 111.00276 * 303.96005 * 19 18 17 33 33 H 1.07998 * 119.93634 * 179.97438 * 20 17 16 34 34 H 1.07998 * 120.06480 * 179.97438 * 21 20 17 35 35 H 1.07999 * 119.60643 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3683 0.0016 10 6 2.0699 -3.5041 0.1086 11 6 3.4629 -3.4463 0.0969 12 6 4.1720 -4.6269 0.2142 13 6 3.4751 -5.8286 0.3342 14 6 4.2246 -7.1018 0.4613 15 6 5.6186 -7.0966 0.4548 16 6 6.3108 -8.2841 0.5777 17 6 5.6240 -9.4790 0.6970 18 6 6.3858 -10.7729 0.8255 19 7 6.6322 -11.3310 -0.5107 20 6 4.2407 -9.4906 0.6992 21 6 3.5379 -8.3088 0.5817 22 7 2.1483 -5.8448 0.3369 23 6 1.4429 -4.7386 0.2271 24 1 -0.4850 0.8400 0.0004 25 1 3.9759 -2.5006 0.0025 26 1 5.2519 -4.6187 0.2133 27 1 6.1557 -6.1648 0.3575 28 1 7.3908 -8.2810 0.5766 29 1 7.3377 -10.5864 1.3226 30 1 5.8019 -11.4815 1.4131 31 1 7.1417 -12.1998 -0.4515 32 1 5.7679 -11.4527 -1.0169 33 1 3.7098 -10.4265 0.7922 34 1 2.4580 -8.3191 0.5832 35 1 0.3642 -4.7907 0.2336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241912976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:10 Heat of formation + Delta-G solvation = 7.601296 kcal Electronic energy + Delta-G solvation = -18780.876215 eV Core-core repulsion = 15743.240588 eV Total energy + Delta-G solvation = -3037.635627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46356 -40.18359 -38.85939 -35.78435 -34.43892 -33.24967 -32.50900 -31.73470 -29.81466 -27.60383 -25.80841 -24.89957 -23.54102 -22.95528 -21.69209 -20.00770 -19.14258 -17.96471 -17.27951 -17.13047 -16.34548 -15.98761 -15.94039 -15.86278 -15.49849 -15.27803 -14.92859 -14.44862 -14.39148 -14.24630 -14.06708 -13.62265 -13.36439 -13.15425 -12.87783 -12.72876 -12.16285 -12.04272 -11.83542 -11.72017 -10.99071 -10.64739 -10.45960 -10.13262 -9.80818 -9.56895 -8.76266 -8.54941 -6.22251 -0.21793 0.34027 0.55926 0.91437 1.35721 1.45300 1.53325 2.12687 2.64158 2.94106 3.15343 3.24731 3.49077 3.72643 3.85599 3.98763 4.00490 4.07051 4.15729 4.23983 4.43632 4.49371 4.58863 4.73983 4.81330 4.86001 4.94071 5.08889 5.18662 5.26254 5.36308 5.45874 5.69101 5.73929 5.79827 5.90179 6.10005 6.24144 6.63384 6.87525 7.04721 7.60158 8.66473 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.050197 B = 0.003226 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.671686 B = 8677.947347 C = 9143.925940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 1.021 2.979 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.419 4.419 8 H 0.108 0.892 9 O -0.209 6.209 10 C 0.078 3.922 11 C -0.197 4.197 12 C -0.099 4.099 13 C 0.056 3.944 14 C -0.039 4.039 15 C -0.118 4.118 16 C -0.101 4.101 17 C -0.091 4.091 18 C 0.106 3.894 19 N -0.855 5.855 20 C -0.116 4.116 21 C -0.110 4.110 22 N -0.443 5.443 23 C 0.025 3.975 24 H 0.276 0.724 25 H 0.145 0.855 26 H 0.164 0.836 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.354 0.646 32 H 0.344 0.656 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.292 -16.729 1.579 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.216 4.216 3 Si 0.840 3.160 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.495 4.495 8 H 0.125 0.875 9 O -0.113 6.113 10 C 0.023 3.977 11 C -0.223 4.223 12 C -0.119 4.119 13 C -0.080 4.080 14 C -0.040 4.040 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.092 4.092 18 C -0.024 4.024 19 N -0.387 5.387 20 C -0.134 4.134 21 C -0.129 4.129 22 N -0.152 5.152 23 C -0.136 4.136 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.181 0.819 27 H 0.157 0.843 28 H 0.162 0.838 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.854 -16.661 1.517 21.721 hybrid contribution -0.580 1.068 0.164 1.227 sum 13.274 -15.593 1.680 20.546 Atomic orbital electron populations 1.70169 1.08121 1.29292 1.47186 1.26648 0.96849 1.02835 0.95257 0.84554 0.77908 0.74212 0.79376 1.18693 1.19624 1.17356 1.21914 0.92822 0.81022 1.53717 0.87487 1.83949 1.35586 1.12345 1.79417 1.20930 0.92328 0.89132 0.95291 1.21705 0.93061 1.00384 1.07176 1.22094 1.01905 0.90816 0.97057 1.19825 0.89118 0.93417 1.05604 1.18570 0.93231 0.90726 1.01476 1.21388 0.92156 0.99761 1.00334 1.21140 1.00724 0.91141 0.98901 1.20111 0.93350 0.95908 0.99823 1.20683 0.99331 0.91609 0.90791 1.58687 1.27692 1.35069 1.17213 1.21158 0.93971 0.97844 1.00476 1.21286 1.00388 0.91932 0.99250 1.67423 1.08224 1.29117 1.10483 1.21892 1.00233 0.85309 1.06216 0.91448 0.83767 0.81912 0.84328 0.83760 0.89348 0.93490 0.83176 0.84306 0.84318 0.86262 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.84 13.67 21.61 0.30 -53.54 16 2 C -0.02 -0.90 5.49 84.83 0.47 -0.43 16 3 Si 1.02 40.67 29.55 68.60 2.03 42.70 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.42 -23.20 9.50 67.92 0.64 -22.56 16 8 H 0.11 5.33 5.25 -2.91 -0.02 5.31 16 9 O -0.21 -12.08 9.76 -22.24 -0.22 -12.29 16 10 C 0.08 3.79 6.67 22.73 0.15 3.95 16 11 C -0.20 -8.30 9.25 22.55 0.21 -8.09 16 12 C -0.10 -3.53 9.45 22.55 0.21 -3.32 16 13 C 0.06 2.10 6.73 41.98 0.28 2.38 16 14 C -0.04 -1.22 5.88 -20.05 -0.12 -1.33 16 15 C -0.12 -2.94 9.42 22.49 0.21 -2.73 16 16 C -0.10 -2.11 9.68 22.24 0.22 -1.90 16 17 C -0.09 -1.81 5.40 -19.82 -0.11 -1.91 16 18 C 0.11 1.46 6.91 85.56 0.59 2.05 16 19 N -0.85 -11.15 9.61 -190.01 -1.83 -12.98 16 20 C -0.12 -2.57 9.68 22.24 0.22 -2.36 16 21 C -0.11 -3.17 9.57 22.49 0.22 -2.95 16 22 N -0.44 -18.42 9.42 -184.32 -1.74 -20.15 16 23 C 0.02 1.12 11.14 84.89 0.95 2.07 16 24 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.14 5.81 5.75 -2.91 -0.02 5.79 16 26 H 0.16 4.37 6.18 -2.91 -0.02 4.35 16 27 H 0.14 2.94 6.18 -2.91 -0.02 2.92 16 28 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.35 3.01 9.08 -89.70 -0.81 2.19 16 32 H 0.34 4.38 8.99 -89.69 -0.81 3.58 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.12 3.67 7.53 -2.91 -0.02 3.65 16 35 H 0.16 6.67 8.06 -2.91 -0.02 6.65 16 Total: -1.00 -68.29 305.71 2.21 -66.08 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.47 Total: 27.33 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 4.14 Total: -37.14 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.27 Total: -86.67 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.22 Total: -12.29 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -68.29 2.21 -66.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241912976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.678 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds