Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35960 * 117.00429 * 2 1 4 4 C 1.38673 * 119.95105 * 0.02562 * 3 2 1 5 5 C 1.38004 * 120.12351 * 179.97438 * 4 3 2 6 6 C 1.39355 * 120.02356 * 0.04308 * 5 4 3 7 7 C 1.48377 * 120.04211 * 180.02562 * 6 5 4 8 8 C 1.39749 * 119.99760 * 179.72154 * 7 6 5 9 9 C 1.38384 * 120.37110 * 179.76302 * 8 7 6 10 10 C 1.37722 * 120.38743 * 0.51637 * 9 8 7 11 11 C 1.40763 * 119.98765 * 359.74319 * 10 9 8 12 12 C 1.41419 * 120.18441 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00131 * 154.79446 * 12 11 10 14 14 C 1.39931 * 120.00049 * 334.79086 * 12 11 10 15 15 N 1.30832 * 120.00174 * 342.74038 * 14 12 11 16 16 Si 1.86798 * 119.99919 * 162.73942 * 14 12 11 17 17 H 1.48500 * 109.47613 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47475 * 120.00244 * 16 14 12 19 19 H 1.48501 * 109.47186 * 240.00087 * 16 14 12 20 20 C 1.38745 * 120.00316 * 359.97438 * 7 6 5 21 21 C 1.39352 * 119.90883 * 359.97438 * 6 5 4 22 22 C 1.38334 * 119.87691 * 359.72284 * 21 6 5 23 23 O 1.35998 * 120.01194 * 180.29311 * 22 21 6 24 24 H 1.08996 * 109.47052 * 299.99936 * 1 2 3 25 25 H 1.08998 * 109.46998 * 60.00190 * 1 2 3 26 26 H 1.09007 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.93439 * 359.97438 * 4 3 2 28 28 H 1.07991 * 119.98353 * 180.02562 * 5 4 3 29 29 H 1.07990 * 119.81155 * 0.02562 * 8 7 6 30 30 H 1.08005 * 119.80883 * 180.23811 * 9 8 7 31 31 H 1.07993 * 120.00856 * 179.72090 * 10 9 8 32 32 H 0.97001 * 119.99793 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.18825 * 0.02562 * 20 7 6 34 34 H 1.07996 * 120.06083 * 179.97438 * 21 6 5 35 35 H 0.96702 * 114.00205 * 270.25603 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2901 2.3738 0.0005 5 6 1.9130 3.6052 0.0011 6 6 3.3044 3.6828 0.0002 7 6 3.9746 5.0066 0.0013 8 6 5.3699 5.0834 0.0063 9 6 6.0030 6.3139 0.0025 10 6 5.2653 7.4769 0.0044 11 6 3.8589 7.4179 0.0049 12 6 3.0973 8.6095 0.0063 13 1 2.0933 8.6092 -0.3916 14 6 3.6446 9.7890 0.5234 15 7 4.6970 9.7369 1.2989 16 14 2.8724 11.4381 0.1065 17 1 1.7011 11.2260 -0.7813 18 1 2.4309 12.1081 1.3561 19 1 3.8711 12.2913 -0.5862 20 6 3.2159 6.1683 0.0028 21 6 4.0654 2.5155 -0.0007 22 6 3.4369 1.2832 0.0051 23 8 4.1769 0.1422 0.0102 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2116 2.3152 0.0005 28 1 1.3219 4.5090 0.0019 29 1 5.9574 4.1773 0.0089 30 1 7.0820 6.3626 0.0025 31 1 5.7657 8.4339 0.0059 32 1 5.0765 10.5546 1.6570 33 1 2.1373 6.1126 0.0035 34 1 5.1438 2.5727 -0.0019 35 1 4.3941 -0.1898 -0.8717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242174653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -58.410759 kcal Electronic energy + Delta-G solvation = -19231.986503 eV Core-core repulsion = 16159.195627 eV Total energy + Delta-G solvation = -3072.790876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39481 -39.62335 -38.62060 -37.42986 -35.48703 -32.57028 -31.96538 -30.99142 -29.42336 -27.76578 -27.18931 -24.03822 -23.81125 -22.01440 -21.76566 -19.75341 -18.95265 -18.39461 -17.39453 -17.23519 -16.78900 -16.60534 -16.09989 -15.37027 -15.25405 -14.98728 -14.96564 -14.56480 -14.21982 -13.85768 -13.33065 -13.25175 -13.11242 -12.82658 -12.77596 -12.52434 -12.23906 -12.06929 -11.93358 -11.74263 -11.44268 -11.16229 -11.03422 -9.99505 -9.70071 -9.40319 -8.64300 -8.44851 -6.35133 -0.01934 0.24025 0.98749 1.29186 1.39373 1.52955 1.54889 2.21661 2.31458 2.58850 2.89563 3.22386 3.77701 3.82345 3.90616 4.10852 4.30538 4.41458 4.43576 4.47523 4.51490 4.71203 4.76146 4.87345 5.00696 5.03519 5.16185 5.23301 5.26378 5.37283 5.60516 5.64567 5.73845 6.00955 6.07883 6.17715 6.29949 6.37737 6.68435 6.88068 6.94242 7.01704 8.35000 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.004061 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.987613 B = 6893.390279 C = 7711.480326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.088 3.912 4 C -0.184 4.184 5 C -0.091 4.091 6 C -0.061 4.061 7 C -0.034 4.034 8 C -0.226 4.226 9 C -0.109 4.109 10 C -0.186 4.186 11 C 0.079 3.921 12 C -0.501 4.501 13 H 0.077 0.923 14 C 0.035 3.965 15 N -0.828 5.828 16 Si 0.982 3.018 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.265 1.265 20 C -0.223 4.223 21 C -0.108 4.108 22 C 0.068 3.932 23 O -0.495 6.495 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.287 0.713 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 -13.085 -3.702 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.042 3.958 4 C -0.202 4.202 5 C -0.109 4.109 6 C -0.062 4.062 7 C -0.034 4.034 8 C -0.245 4.245 9 C -0.128 4.128 10 C -0.205 4.205 11 C 0.077 3.923 12 C -0.531 4.531 13 H 0.095 0.905 14 C -0.179 4.179 15 N -0.455 5.455 16 Si 0.803 3.197 17 H -0.181 1.181 18 H -0.191 1.191 19 H -0.190 1.190 20 C -0.242 4.242 21 C -0.126 4.126 22 C 0.023 3.977 23 O -0.307 6.307 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.178 0.822 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.122 -13.101 -2.949 14.758 hybrid contribution -0.152 1.103 -0.427 1.193 sum -6.273 -11.998 -3.376 13.954 Atomic orbital electron populations 1.23394 0.76537 1.05696 1.02324 1.86089 1.23328 1.25733 1.88638 1.19533 0.91649 0.85440 0.99134 1.21288 1.01266 0.90608 1.07078 1.21269 0.93630 0.98181 0.97854 1.18846 0.93495 0.92005 1.01815 1.18568 0.93365 0.91205 1.00234 1.20796 0.93295 0.96872 1.13511 1.20922 0.98812 0.92841 1.00178 1.21386 0.94452 0.97230 1.07468 1.17905 0.92759 0.92932 0.88739 1.19837 1.01586 0.94094 1.37574 0.90525 1.26740 0.94787 1.04605 0.91770 1.69886 1.20889 1.31688 1.23010 0.85167 0.79231 0.76203 0.79148 1.18081 1.19145 1.18954 1.21254 0.98141 0.91798 1.13003 1.21401 1.00990 0.90069 1.00176 1.17645 0.86679 0.86322 1.07054 1.84827 1.71979 1.38878 1.35017 0.91960 0.91474 0.85999 0.82193 0.84959 0.86226 0.86833 0.88049 0.90201 0.87678 0.84035 0.73939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.94 10.27 -79.09 -0.81 -8.75 16 3 C 0.09 2.49 6.70 22.62 0.15 2.64 16 4 C -0.18 -4.95 9.02 22.32 0.20 -4.75 16 5 C -0.09 -3.01 9.41 22.48 0.21 -2.79 16 6 C -0.06 -2.29 5.88 -20.04 -0.12 -2.41 16 7 C -0.03 -1.50 5.87 -20.09 -0.12 -1.62 16 8 C -0.23 -9.91 9.44 22.67 0.21 -9.69 16 9 C -0.11 -5.12 10.01 22.18 0.22 -4.90 16 10 C -0.19 -9.91 8.69 22.77 0.20 -9.72 16 11 C 0.08 4.30 5.56 -21.32 -0.12 4.18 16 12 C -0.50 -27.15 9.05 23.46 0.21 -26.94 16 13 H 0.08 3.99 7.90 -2.91 -0.02 3.96 16 14 C 0.04 1.79 5.14 85.25 0.44 2.23 16 15 N -0.83 -43.76 10.97 21.82 0.24 -43.52 16 16 Si 0.98 38.25 29.59 68.60 2.03 40.28 16 17 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 C -0.22 -10.98 9.17 22.95 0.21 -10.77 16 21 C -0.11 -3.58 9.36 22.56 0.21 -3.37 16 22 C 0.07 2.06 6.71 22.54 0.15 2.21 16 23 O -0.50 -13.08 13.28 -79.52 -1.06 -14.13 16 24 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 25 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 26 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.16 3.18 6.28 -2.91 -0.02 3.16 16 28 H 0.13 4.28 6.18 -2.92 -0.02 4.26 16 29 H 0.12 4.48 6.18 -2.92 -0.02 4.46 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.10 5.64 6.18 -2.91 -0.02 5.62 16 32 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 33 H 0.11 4.82 6.18 -2.91 -0.02 4.80 16 34 H 0.14 4.43 6.18 -2.91 -0.02 4.41 16 35 H 0.40 6.61 9.06 -74.06 -0.67 5.94 16 Total: -1.00 -65.11 299.20 4.05 -61.06 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.47 Total: 29.45 kcal Atomic # 6 Polarization: -67.57 SS G_CDS: 3.18 Total: -64.39 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.24 Total: -43.52 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.87 Total: -22.88 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -65.11 4.05 -61.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242174653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.649 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds