Wall clock time and date at job start Mon Mar 30 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38249 * 119.96380 * 2 1 4 4 C 1.38349 * 120.31281 * 180.25796 * 3 2 1 5 5 C 1.38043 * 120.24191 * 359.76700 * 4 3 2 6 6 C 1.39311 * 119.92664 * 359.97438 * 5 4 3 7 7 C 1.48231 * 120.15407 * 179.97438 * 6 5 4 8 8 C 1.39307 * 120.16122 * 64.74731 * 7 6 5 9 9 C 1.38013 * 119.93923 * 179.76394 * 8 7 6 10 10 C 1.38441 * 120.27342 * 0.51640 * 9 8 7 11 11 C 1.38118 * 120.33081 * 359.73447 * 10 9 8 12 12 C 1.38750 * 120.05007 * 0.02562 * 11 10 9 13 13 O 1.35668 * 120.13598 * 179.97438 * 12 11 10 14 14 C 1.34806 * 117.00427 * 354.39655 * 13 12 11 15 15 H 1.08005 * 119.99539 * 5.07160 * 14 13 12 16 16 C 1.38636 * 120.00530 * 185.07195 * 14 13 12 17 17 N 1.31563 * 120.00503 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99842 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47095 * 90.00085 * 18 16 14 20 20 H 1.48503 * 109.47085 * 210.00014 * 18 16 14 21 21 H 1.48506 * 109.47214 * 329.99677 * 18 16 14 22 22 C 1.38519 * 119.97029 * 179.74664 * 2 1 3 23 23 O 1.35844 * 120.11752 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47022 * 270.25019 * 1 2 3 25 25 H 1.09005 * 109.47684 * 30.25359 * 1 2 3 26 26 H 1.09000 * 109.47232 * 150.25286 * 1 2 3 27 27 H 1.07995 * 119.84408 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.87970 * 179.74845 * 4 3 2 29 29 H 1.08001 * 120.03454 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.03159 * 0.02562 * 8 7 6 31 31 H 1.08003 * 119.85930 * 180.25002 * 9 8 7 32 32 H 1.08002 * 119.83494 * 179.76331 * 10 9 8 33 33 H 1.07998 * 119.98084 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00389 * 179.97438 * 17 16 14 35 35 H 0.96700 * 114.00274 * 269.72799 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1977 0.0000 4 6 3.5809 1.2061 -0.0054 5 6 4.2834 0.0178 -0.0059 6 6 3.5978 -1.1949 -0.0005 7 6 4.3471 -2.4739 -0.0017 8 6 5.1493 -2.8160 1.0846 9 6 5.8411 -4.0103 1.0808 10 6 5.7500 -4.8662 -0.0035 11 6 4.9620 -4.5358 -1.0886 12 6 4.2568 -3.3409 -1.0970 13 8 3.4827 -3.0143 -2.1623 14 6 3.5315 -3.8366 -3.2294 15 1 4.1029 -4.7518 -3.1801 16 6 2.8485 -3.5075 -4.3901 17 7 2.8958 -4.3102 -5.4314 18 14 1.8610 -1.9242 -4.4755 19 1 2.7289 -0.8256 -4.9704 20 1 0.7147 -2.1051 -5.4022 21 1 1.3541 -1.5832 -3.1220 22 6 2.1989 -1.2000 0.0053 23 8 1.5215 -2.3774 0.0110 24 1 -0.3633 0.0045 1.0277 25 1 -0.3635 0.8877 -0.5178 26 1 -0.3634 -0.8922 -0.5099 27 1 1.6543 2.1312 0.0004 28 1 4.1132 2.1459 -0.0095 29 1 5.3633 0.0283 -0.0097 30 1 5.2265 -2.1494 1.9308 31 1 6.4595 -4.2761 1.9254 32 1 6.2974 -5.7972 -0.0006 33 1 4.8947 -5.2079 -1.9313 34 1 2.4176 -4.0801 -6.2433 35 1 1.3293 -2.7164 0.8961 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242346752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:10 Heat of formation + Delta-G solvation = -41.514367 kcal Electronic energy + Delta-G solvation = -20439.393122 eV Core-core repulsion = 17367.334929 eV Total energy + Delta-G solvation = -3072.058193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30971 -40.20419 -38.16080 -37.45067 -34.51082 -34.18717 -32.14671 -30.84894 -29.51205 -27.69194 -27.19306 -24.39216 -23.18334 -22.43815 -21.67025 -19.75638 -19.24862 -18.88184 -17.10790 -16.86710 -16.54574 -16.47734 -15.78647 -15.49872 -15.46789 -15.28631 -14.68736 -14.26622 -14.12971 -14.07048 -14.01420 -13.34155 -13.10714 -13.02556 -12.75596 -12.60277 -12.55150 -12.32017 -12.23382 -11.97948 -11.44922 -11.11452 -10.93600 -9.94205 -9.45936 -9.35440 -8.92824 -8.52885 -6.20941 0.16958 0.40657 0.65134 0.76045 1.23268 1.27424 1.49447 2.25581 2.69864 2.78837 3.07838 3.17575 3.41397 3.76998 3.97559 4.10739 4.20069 4.26765 4.41595 4.49765 4.58673 4.66970 4.73764 4.77156 4.89729 4.95345 5.02918 5.18586 5.28752 5.39119 5.50859 5.53953 5.62972 5.65359 5.73899 5.80409 5.90836 6.03253 6.25488 6.83805 6.95822 7.64621 8.59039 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.010662 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.421661 B = 2625.595444 C = 4174.565013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C -0.114 4.114 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.068 4.068 7 C -0.127 4.127 8 C -0.060 4.060 9 C -0.184 4.184 10 C -0.072 4.072 11 C -0.249 4.249 12 C 0.144 3.856 13 O -0.224 6.224 14 C -0.391 4.391 15 H 0.081 0.919 16 C 0.017 3.983 17 N -0.922 5.922 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.268 1.268 21 H -0.264 1.264 22 C 0.103 3.897 23 O -0.500 6.500 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.049 0.951 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.283 0.717 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 10.166 15.873 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.132 4.132 4 C -0.144 4.144 5 C -0.132 4.132 6 C -0.069 4.069 7 C -0.128 4.128 8 C -0.078 4.078 9 C -0.202 4.202 10 C -0.090 4.090 11 C -0.268 4.268 12 C 0.094 3.906 13 O -0.130 6.130 14 C -0.468 4.468 15 H 0.098 0.902 16 C -0.182 4.182 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.188 1.188 22 C 0.058 3.942 23 O -0.311 6.311 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.001 10.354 15.009 18.234 hybrid contribution -0.335 -0.455 -0.438 0.715 sum -0.336 9.898 14.570 17.618 Atomic orbital electron populations 1.20671 0.89541 1.02791 1.03231 1.20506 0.97917 0.92543 1.02378 1.21298 0.94553 0.97386 0.99952 1.21390 0.94333 0.98413 1.00247 1.21362 1.00521 0.91121 1.00159 1.19182 0.92442 0.93284 1.01952 1.18053 1.04832 0.94886 0.95030 1.21157 0.93822 0.96974 0.95865 1.21120 1.04070 0.95197 0.99794 1.21205 0.95873 0.99790 0.92154 1.21288 1.04976 0.98566 1.01959 1.19610 0.89789 0.93207 0.87966 1.83588 1.57969 1.49210 1.22211 1.20722 1.32533 1.03300 0.90249 0.90177 1.25085 0.98087 1.01548 0.93442 1.69722 1.43878 1.38775 1.03995 0.85379 0.78698 0.79074 0.78757 1.19596 1.19264 1.18812 1.18639 0.89286 0.85532 1.00719 1.84900 1.76066 1.36624 1.33491 0.89230 0.90107 0.93166 0.82829 0.82601 0.84744 0.83258 0.82769 0.84245 0.87617 0.90731 0.75020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 9.79 71.23 0.70 -2.01 16 2 C -0.13 -4.14 5.89 -19.80 -0.12 -4.26 16 3 C -0.11 -2.96 9.69 22.30 0.22 -2.74 16 4 C -0.13 -3.23 10.03 22.25 0.22 -3.01 16 5 C -0.11 -3.53 9.73 22.48 0.22 -3.32 16 6 C -0.07 -2.55 4.95 -19.96 -0.10 -2.64 16 7 C -0.13 -5.04 4.95 -19.94 -0.10 -5.14 16 8 C -0.06 -1.88 9.73 22.47 0.22 -1.66 16 9 C -0.18 -5.35 10.03 22.26 0.22 -5.13 16 10 C -0.07 -2.50 10.03 22.29 0.22 -2.28 16 11 C -0.25 -11.29 9.16 22.36 0.20 -11.09 16 12 C 0.14 7.03 6.35 22.82 0.14 7.17 16 13 O -0.22 -12.70 7.59 -21.60 -0.16 -12.86 16 14 C -0.39 -24.06 9.94 67.92 0.68 -23.39 16 15 H 0.08 5.13 5.44 -2.91 -0.02 5.11 16 16 C 0.02 1.01 5.49 84.83 0.47 1.48 16 17 N -0.92 -57.19 13.96 21.61 0.30 -56.89 16 18 Si 0.96 49.04 28.62 68.60 1.96 51.00 16 19 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.26 -14.01 7.11 99.48 0.71 -13.30 16 22 C 0.10 3.83 6.38 22.74 0.14 3.97 16 23 O -0.50 -19.39 11.55 -91.80 -1.06 -20.45 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.74 8.09 -2.38 -0.02 1.72 16 26 H 0.05 1.51 7.53 -2.39 -0.02 1.50 16 27 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 32 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 34 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 35 H 0.39 11.01 9.06 -74.06 -0.67 10.33 16 Total: -1.00 -75.10 305.74 4.83 -70.26 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.45 Total: 22.97 kcal Atomic # 6 Polarization: -57.36 SS G_CDS: 3.34 Total: -54.02 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.30 Total: -56.89 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.22 Total: -33.32 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.96 Total: 51.00 kcal Total: -75.10 4.83 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242346752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.750 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds