Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48493 * 109.47429 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47480 * 300.00467 * 3 2 1 6 6 H 1.48500 * 109.46903 * 60.00324 * 3 2 1 7 7 C 1.38656 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99640 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00629 * 359.97438 * 7 2 1 10 10 C 1.35637 * 117.00700 * 185.06698 * 9 7 2 11 11 C 1.38786 * 120.13401 * 354.40097 * 10 9 7 12 12 C 1.38087 * 120.04689 * 180.02562 * 11 10 9 13 13 C 1.38457 * 120.34112 * 359.97438 * 12 11 10 14 14 C 1.37992 * 120.27362 * 359.74669 * 13 12 11 15 15 C 1.39334 * 119.94042 * 0.52670 * 14 13 12 16 16 C 1.48213 * 120.16148 * 179.74833 * 15 14 13 17 17 C 1.39409 * 119.73546 * 359.72529 * 16 15 14 18 18 C 1.38365 * 119.06558 * 179.97438 * 17 16 15 19 19 C 1.38815 * 118.51811 * 0.25465 * 18 17 16 20 20 C 1.38247 * 119.37447 * 359.47533 * 19 18 17 21 21 C 1.50706 * 119.54633 * 180.25661 * 20 19 18 22 22 N 1.46898 * 109.46947 * 95.27623 * 21 20 19 23 23 N 1.31766 * 120.89890 * 0.53694 * 20 19 18 24 24 H 0.96997 * 119.99622 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.97029 * 0.02869 * 11 10 9 26 26 H 1.08004 * 119.83086 * 179.97438 * 12 11 10 27 27 H 1.08003 * 119.86647 * 179.97438 * 13 12 11 28 28 H 1.07996 * 120.03022 * 180.25760 * 14 13 12 29 29 H 1.08002 * 120.46740 * 359.97438 * 17 16 15 30 30 H 1.08001 * 120.74524 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.31081 * 179.74834 * 19 18 17 32 32 H 1.08993 * 109.46936 * 215.28017 * 21 20 19 33 33 H 1.08999 * 109.46973 * 335.27748 * 21 20 19 34 34 H 1.00909 * 110.99489 * 179.97438 * 22 21 20 35 35 H 1.00892 * 111.00244 * 303.94992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0694 -3.5036 0.1057 11 6 3.4557 -3.4404 0.0912 12 6 4.2018 -4.5973 0.1989 13 6 3.5742 -5.8253 0.3223 14 6 2.1967 -5.9035 0.3439 15 6 1.4325 -4.7440 0.2303 16 6 -0.0474 -4.8229 0.2474 17 6 -0.6724 -6.0628 0.3719 18 6 -2.0548 -6.1203 0.3868 19 6 -2.7687 -4.9354 0.2713 20 6 -2.0842 -3.7397 0.1566 21 6 -2.8554 -2.4505 0.0368 22 7 -2.9930 -1.8371 1.3644 23 7 -0.7669 -3.7126 0.1450 24 1 -0.4849 0.8401 0.0004 25 1 3.9513 -2.4855 -0.0043 26 1 5.2805 -4.5441 0.1869 27 1 4.1653 -6.7254 0.4056 28 1 1.7113 -6.8630 0.4445 29 1 -0.0858 -6.9658 0.4555 30 1 -2.5670 -7.0663 0.4816 31 1 -3.8486 -4.9471 0.2755 32 1 -2.3221 -1.7683 -0.6252 33 1 -3.8444 -2.6555 -0.3730 34 1 -3.5066 -0.9702 1.3107 35 1 -3.4270 -2.4752 2.0144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = 25.972062 kcal Electronic energy + Delta-G solvation = -20180.698844 eV Core-core repulsion = 17143.859834 eV Total energy + Delta-G solvation = -3036.839011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25505 -40.16997 -37.95008 -35.78493 -34.15056 -33.42506 -32.74374 -30.60650 -29.90197 -27.22993 -26.27201 -24.85032 -23.44435 -22.17385 -21.82364 -19.66544 -18.78638 -17.57840 -17.15291 -16.79203 -16.45120 -16.18035 -15.83404 -15.62613 -15.32069 -15.11496 -14.77532 -14.31025 -14.15873 -13.95309 -13.81846 -13.40613 -13.02176 -12.92440 -12.52916 -12.48918 -12.30449 -12.14413 -11.98069 -11.10135 -10.76085 -10.63471 -10.32931 -9.77792 -9.38911 -9.26586 -8.62297 -8.22715 -5.89402 -0.12612 0.58280 0.83155 1.07130 1.36810 1.44964 1.52133 2.23904 2.83324 3.13587 3.40496 3.44968 3.66393 3.82889 3.92021 4.08853 4.22238 4.29064 4.33733 4.35775 4.49872 4.61988 4.75133 4.80018 4.89439 5.10988 5.15102 5.20482 5.26966 5.35261 5.40121 5.70374 5.78002 5.82765 6.01157 6.15309 6.30537 6.37237 6.75439 7.13738 7.55797 8.01000 8.91568 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.009389 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.141210 B = 2981.384500 C = 5078.281436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C -0.008 4.008 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.434 4.434 8 H 0.087 0.913 9 O -0.158 6.158 10 C 0.134 3.866 11 C -0.266 4.266 12 C -0.059 4.059 13 C -0.205 4.205 14 C -0.049 4.049 15 C -0.164 4.164 16 C 0.152 3.848 17 C -0.181 4.181 18 C -0.072 4.072 19 C -0.186 4.186 20 C 0.109 3.891 21 C 0.129 3.871 22 N -0.840 5.840 23 N -0.464 5.464 24 H 0.264 0.736 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.158 0.842 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.349 0.651 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -11.392 1.060 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.210 4.210 3 Si 0.826 3.174 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.511 4.511 8 H 0.105 0.895 9 O -0.059 6.059 10 C 0.078 3.922 11 C -0.285 4.285 12 C -0.078 4.078 13 C -0.224 4.224 14 C -0.068 4.068 15 C -0.166 4.166 16 C 0.016 3.984 17 C -0.201 4.201 18 C -0.097 4.097 19 C -0.207 4.207 20 C -0.031 4.031 21 C -0.002 4.002 22 N -0.372 5.372 23 N -0.174 5.174 24 H 0.073 0.927 25 H 0.132 0.868 26 H 0.161 0.839 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.178 0.822 30 H 0.193 0.807 31 H 0.176 0.824 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.164 0.836 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.784 -10.305 0.935 10.716 hybrid contribution -0.850 0.561 -0.153 1.030 sum -3.634 -9.744 0.782 10.429 Atomic orbital electron populations 1.70328 1.06723 1.27227 1.44693 1.26287 0.96911 1.01515 0.96331 0.84742 0.78159 0.76381 0.78162 1.18514 1.19621 1.19819 1.21789 0.92003 0.82627 1.54641 0.89541 1.84270 1.33485 1.11029 1.77106 1.20082 0.91172 0.88447 0.92460 1.21272 0.93213 1.00250 1.13788 1.21259 1.00184 0.91640 0.94677 1.21054 0.94025 0.98059 1.09234 1.21195 0.94047 0.96115 0.95395 1.18244 0.90921 0.91989 1.15460 1.20158 0.93097 0.89625 0.95514 1.22308 0.96403 0.97879 1.03472 1.21830 0.93128 0.99498 0.95222 1.22239 1.02132 0.92553 1.03732 1.21533 0.89853 0.95797 0.95939 1.20379 0.96153 0.91884 0.91745 1.58195 1.61153 1.08764 1.09091 1.67845 1.08059 1.31138 1.10325 0.92706 0.86811 0.83910 0.82677 0.82657 0.82198 0.80686 0.82409 0.92793 0.92078 0.83638 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.62 13.67 21.61 0.30 -51.32 16 2 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 3 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.43 -26.27 9.49 67.92 0.64 -25.63 16 8 H 0.09 4.95 5.21 -2.91 -0.02 4.94 16 9 O -0.16 -9.75 7.59 -21.29 -0.16 -9.91 16 10 C 0.13 7.11 6.65 22.83 0.15 7.26 16 11 C -0.27 -12.37 9.16 22.36 0.20 -12.16 16 12 C -0.06 -2.12 10.03 22.29 0.22 -1.90 16 13 C -0.21 -6.43 10.03 22.26 0.22 -6.21 16 14 C -0.05 -1.68 9.41 22.48 0.21 -1.47 16 15 C -0.16 -7.46 5.89 -19.94 -0.12 -7.58 16 16 C 0.15 6.74 6.73 41.95 0.28 7.02 16 17 C -0.18 -5.79 9.46 22.58 0.21 -5.58 16 18 C -0.07 -1.90 10.16 22.44 0.23 -1.67 16 19 C -0.19 -5.59 9.71 22.41 0.22 -5.37 16 20 C 0.11 4.45 6.29 42.57 0.27 4.72 16 21 C 0.13 4.98 7.09 85.56 0.61 5.59 16 22 N -0.84 -30.77 9.61 -190.01 -1.83 -32.59 16 23 N -0.46 -23.25 8.07 -173.06 -1.40 -24.64 16 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.11 5.44 5.64 -2.91 -0.02 5.43 16 26 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 28 H 0.16 3.93 6.18 -2.91 -0.02 3.91 16 29 H 0.16 3.85 6.20 -2.91 -0.02 3.83 16 30 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 34 H 0.35 11.21 9.08 -89.69 -0.81 10.39 16 35 H 0.34 10.47 8.98 -89.70 -0.81 9.67 16 Total: -1.00 -79.09 303.43 2.29 -76.80 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.47 Total: 37.91 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 3.82 Total: -42.95 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -2.93 Total: -108.56 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.16 Total: -9.91 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -79.09 2.29 -76.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.771 kcal (2) G-P(sol) polarization free energy of solvation -79.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds