Wall clock time and date at job start Mon Mar 30 2020 01:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86793 * 119.99818 * 2 1 4 4 H 1.48502 * 109.47102 * 240.00203 * 3 2 1 5 5 H 1.48496 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47325 * 120.00519 * 3 2 1 7 7 C 1.38663 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99996 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.35650 * 116.99742 * 185.05916 * 9 7 2 11 11 C 1.38779 * 120.13621 * 354.40924 * 10 9 7 12 12 C 1.38089 * 120.04793 * 180.02562 * 11 10 9 13 13 C 1.38467 * 120.33411 * 0.02562 * 12 11 10 14 14 C 1.37992 * 120.27409 * 359.97438 * 13 12 11 15 15 C 1.39322 * 119.94132 * 359.97438 * 14 13 12 16 16 C 1.48243 * 120.16100 * 180.02562 * 15 14 13 17 17 C 1.39858 * 120.90949 * 129.72328 * 16 15 14 18 18 C 1.37924 * 119.00911 * 179.75690 * 17 16 15 19 19 N 1.31954 * 120.89125 * 0.53360 * 18 17 16 20 20 C 1.31926 * 122.01979 * 359.73483 * 19 18 17 21 21 C 1.50702 * 119.55646 * 180.02562 * 20 19 18 22 22 N 1.46899 * 109.46872 * 274.97836 * 21 20 19 23 23 C 1.37967 * 120.88424 * 359.97438 * 20 19 18 24 24 H 0.96998 * 120.00037 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.97397 * 0.03996 * 11 10 9 26 26 H 1.08003 * 119.83895 * 180.26859 * 12 11 10 27 27 H 1.07996 * 119.86477 * 179.97438 * 13 12 11 28 28 H 1.07997 * 120.03109 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.49277 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.54668 * 180.26890 * 18 17 16 31 31 H 1.08999 * 109.47121 * 34.98400 * 21 20 19 32 32 H 1.08998 * 109.46928 * 154.98257 * 21 20 19 33 33 H 1.00907 * 110.99695 * 180.02562 * 22 21 20 34 34 H 1.00900 * 111.00335 * 303.95193 * 22 21 20 35 35 H 1.08003 * 120.49023 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5037 0.1055 11 6 3.4558 -3.4403 0.0911 12 6 4.2020 -4.5973 0.1986 13 6 3.5743 -5.8255 0.3208 14 6 2.1967 -5.9042 0.3366 15 6 1.4326 -4.7440 0.2299 16 6 -0.0476 -4.8229 0.2470 17 6 -0.8005 -4.0105 1.1009 18 6 -2.1758 -4.1126 1.0809 19 7 -2.7800 -4.9688 0.2790 20 6 -2.1071 -5.7567 -0.5377 21 6 -2.8540 -6.7138 -1.4305 22 7 -3.1386 -7.9515 -0.6920 23 6 -0.7289 -5.7154 -0.5860 24 1 -0.4850 0.8400 0.0004 25 1 3.9513 -2.4855 -0.0041 26 1 5.2806 -4.5436 0.1914 27 1 4.1653 -6.7255 0.4039 28 1 1.7112 -6.8641 0.4325 29 1 -0.3125 -3.3105 1.7629 30 1 -2.7659 -3.4863 1.7336 31 1 -3.7910 -6.2573 -1.7493 32 1 -2.2460 -6.9443 -2.3053 33 1 -3.6390 -8.6103 -1.2698 34 1 -2.2899 -8.3600 -0.3303 35 1 -0.1845 -6.3631 -1.2573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:30 Heat of formation + Delta-G solvation = 31.046515 kcal Electronic energy + Delta-G solvation = -19724.823887 eV Core-core repulsion = 16688.204921 eV Total energy + Delta-G solvation = -3036.618966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90385 -38.83566 -36.49163 -34.76742 -32.90073 -32.34240 -30.38006 -29.44244 -28.63987 -25.55644 -25.12265 -23.44876 -21.98728 -21.44057 -20.16085 -18.07943 -17.23753 -16.28322 -15.92143 -15.53777 -14.99386 -14.73164 -14.53112 -14.39568 -14.14477 -13.68447 -13.60568 -13.04970 -12.85098 -12.64549 -12.56960 -11.97908 -11.77454 -11.52791 -11.11431 -10.95493 -10.88836 -10.81185 -10.53513 -9.54407 -9.28543 -8.93998 -8.88914 -8.75782 -8.44701 -8.06849 -7.29542 -6.54653 -4.13828 1.49975 1.68686 2.22830 2.33871 3.07521 3.08425 3.11462 3.87781 4.22472 4.47917 4.62100 4.80681 4.97644 5.07405 5.09583 5.30282 5.45270 5.54410 5.66071 5.70623 5.74292 5.86417 5.95668 6.09912 6.20537 6.32137 6.46341 6.57126 6.76061 6.84527 7.02352 7.05351 7.07792 7.24281 7.25982 7.32950 7.40985 7.66878 7.88200 8.56006 8.89626 9.56157 10.61578 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.006281 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.162555 B = 4456.612324 C = 5844.221546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.398 4.398 8 H 0.092 0.908 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.233 4.233 12 C -0.066 4.066 13 C -0.216 4.216 14 C -0.055 4.055 15 C -0.145 4.145 16 C 0.035 3.965 17 C -0.130 4.130 18 C 0.099 3.901 19 N -0.479 5.479 20 C 0.115 3.885 21 C 0.118 3.882 22 N -0.841 5.841 23 C -0.168 4.168 24 H 0.272 0.728 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.341 0.659 34 H 0.340 0.660 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -10.044 -0.746 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.474 4.474 8 H 0.110 0.890 9 O -0.064 6.064 10 C 0.112 3.888 11 C -0.252 4.252 12 C -0.084 4.084 13 C -0.235 4.235 14 C -0.073 4.073 15 C -0.147 4.147 16 C 0.027 3.973 17 C -0.150 4.150 18 C -0.057 4.057 19 N -0.189 5.189 20 C -0.023 4.023 21 C -0.013 4.013 22 N -0.371 5.371 23 C -0.188 4.188 24 H 0.082 0.918 25 H 0.148 0.852 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.768 -9.372 -0.285 9.408 hybrid contribution 2.231 0.594 -0.775 2.435 sum 1.463 -8.778 -1.059 8.962 Atomic orbital electron populations 1.70025 1.05887 1.28004 1.44696 1.25284 0.95845 0.98795 0.96259 0.85791 0.78773 0.79735 0.79237 1.19484 1.20188 1.19428 1.21310 0.91849 0.80728 1.53482 0.89041 1.83976 1.34126 1.11270 1.77041 1.19293 0.90093 0.87354 0.92074 1.21130 0.93444 0.99226 1.11417 1.20850 0.98633 0.92345 0.96564 1.20524 0.94075 0.97098 1.11848 1.20690 0.93490 0.95799 0.97315 1.17759 0.90628 0.91467 1.14826 1.18926 0.92479 0.93067 0.92838 1.22258 0.94844 0.98583 0.99363 1.22533 0.92172 0.94920 0.96055 1.67337 1.41185 1.05163 1.05211 1.20735 0.90215 0.95711 0.95658 1.20517 0.99412 0.89192 0.92183 1.58594 1.28484 1.07624 1.42405 1.21897 0.94560 1.01315 1.01073 0.91788 0.85233 0.87289 0.87330 0.86902 0.84606 0.83136 0.89549 0.94210 0.84621 0.84786 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.96 13.67 55.48 0.76 -23.20 16 2 C 0.04 1.16 5.49 -17.51 -0.10 1.06 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.40 -10.61 9.49 30.89 0.29 -10.32 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.98 16 9 O -0.16 -4.37 8.22 0.39 0.00 -4.36 16 10 C 0.17 3.89 6.58 -38.73 -0.25 3.64 16 11 C -0.23 -4.86 9.16 -39.44 -0.36 -5.22 16 12 C -0.07 -1.15 10.03 -39.55 -0.40 -1.55 16 13 C -0.22 -3.58 10.03 -39.59 -0.40 -3.98 16 14 C -0.05 -0.95 9.55 -39.27 -0.37 -1.33 16 15 C -0.15 -3.00 5.53 -104.73 -0.58 -3.58 16 16 C 0.03 0.71 5.29 -104.59 -0.55 0.15 16 17 C -0.13 -2.71 8.92 -39.09 -0.35 -3.06 16 18 C 0.10 1.92 11.17 -17.61 -0.20 1.72 16 19 N -0.48 -9.22 10.26 -9.57 -0.10 -9.32 16 20 C 0.12 2.00 6.29 -82.65 -0.52 1.48 16 21 C 0.12 1.59 7.09 -4.98 -0.04 1.55 16 22 N -0.84 -9.83 9.61 -11.41 -0.11 -9.94 16 23 C -0.17 -2.98 9.26 -39.09 -0.36 -3.34 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 26 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.14 2.98 7.79 -52.49 -0.41 2.57 16 30 H 0.15 2.55 8.06 -52.48 -0.42 2.13 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.34 3.00 9.08 -39.29 -0.36 2.64 16 34 H 0.34 3.67 8.99 -39.29 -0.35 3.32 16 35 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 307.98 15.07 4.64 4.64 Total: -1.00 -30.42 307.98 -7.79 -38.20 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -3.78 Total: 11.93 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -4.18 Total: -22.76 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.55 Total: -42.46 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.00 Total: -4.36 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.42 -7.79 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.251 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds