Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86793 * 119.99818 * 2 1 4 4 H 1.48502 * 109.47102 * 240.00203 * 3 2 1 5 5 H 1.48496 * 109.47592 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47325 * 120.00519 * 3 2 1 7 7 C 1.38663 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99996 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.35650 * 116.99742 * 185.05916 * 9 7 2 11 11 C 1.38779 * 120.13621 * 354.40924 * 10 9 7 12 12 C 1.38089 * 120.04793 * 180.02562 * 11 10 9 13 13 C 1.38467 * 120.33411 * 0.02562 * 12 11 10 14 14 C 1.37992 * 120.27409 * 359.97438 * 13 12 11 15 15 C 1.39322 * 119.94132 * 359.97438 * 14 13 12 16 16 C 1.48243 * 120.16100 * 180.02562 * 15 14 13 17 17 C 1.39858 * 120.90949 * 129.72328 * 16 15 14 18 18 C 1.37924 * 119.00911 * 179.75690 * 17 16 15 19 19 N 1.31954 * 120.89125 * 0.53360 * 18 17 16 20 20 C 1.31926 * 122.01979 * 359.73483 * 19 18 17 21 21 C 1.50702 * 119.55646 * 180.02562 * 20 19 18 22 22 N 1.46899 * 109.46872 * 274.97836 * 21 20 19 23 23 C 1.37967 * 120.88424 * 359.97438 * 20 19 18 24 24 H 0.96998 * 120.00037 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.97397 * 0.03996 * 11 10 9 26 26 H 1.08003 * 119.83895 * 180.26859 * 12 11 10 27 27 H 1.07996 * 119.86477 * 179.97438 * 13 12 11 28 28 H 1.07997 * 120.03109 * 180.02562 * 14 13 12 29 29 H 1.07996 * 120.49277 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.54668 * 180.26890 * 18 17 16 31 31 H 1.08999 * 109.47121 * 34.98400 * 21 20 19 32 32 H 1.08998 * 109.46928 * 154.98257 * 21 20 19 33 33 H 1.00907 * 110.99695 * 180.02562 * 22 21 20 34 34 H 1.00900 * 111.00335 * 303.95193 * 22 21 20 35 35 H 1.08003 * 120.49023 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0695 -3.5037 0.1055 11 6 3.4558 -3.4403 0.0911 12 6 4.2020 -4.5973 0.1986 13 6 3.5743 -5.8255 0.3208 14 6 2.1967 -5.9042 0.3366 15 6 1.4326 -4.7440 0.2299 16 6 -0.0476 -4.8229 0.2470 17 6 -0.8005 -4.0105 1.1009 18 6 -2.1758 -4.1126 1.0809 19 7 -2.7800 -4.9688 0.2790 20 6 -2.1071 -5.7567 -0.5377 21 6 -2.8540 -6.7138 -1.4305 22 7 -3.1386 -7.9515 -0.6920 23 6 -0.7289 -5.7154 -0.5860 24 1 -0.4850 0.8400 0.0004 25 1 3.9513 -2.4855 -0.0041 26 1 5.2806 -4.5436 0.1914 27 1 4.1653 -6.7255 0.4039 28 1 1.7112 -6.8641 0.4325 29 1 -0.3125 -3.3105 1.7629 30 1 -2.7659 -3.4863 1.7336 31 1 -3.7910 -6.2573 -1.7493 32 1 -2.2460 -6.9443 -2.3053 33 1 -3.6390 -8.6103 -1.2698 34 1 -2.2899 -8.3600 -0.3303 35 1 -0.1845 -6.3631 -1.2573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588003.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = 10.373555 kcal Electronic energy + Delta-G solvation = -19725.720333 eV Core-core repulsion = 16688.204921 eV Total energy + Delta-G solvation = -3037.515413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41482 -40.42318 -38.13033 -35.89284 -34.45025 -34.17438 -31.71481 -30.94989 -30.21508 -27.39313 -26.39973 -24.93175 -23.42721 -23.04427 -21.60484 -19.83868 -18.87663 -17.61430 -17.42671 -16.85233 -16.46296 -16.36339 -16.05852 -15.64203 -15.61842 -15.29372 -15.14600 -14.50875 -14.24598 -14.13042 -14.02960 -13.56818 -13.20022 -13.11187 -12.63942 -12.49282 -12.39271 -12.29993 -12.16323 -11.28751 -10.83888 -10.76137 -10.38630 -9.99158 -9.58531 -9.57080 -8.94238 -8.46916 -6.14377 -0.01588 0.22086 0.68617 0.83453 1.34013 1.43906 1.49140 2.15471 2.75417 2.89077 3.16453 3.33521 3.44359 3.58205 3.86567 3.94937 4.16105 4.17623 4.25854 4.28528 4.44262 4.56210 4.57910 4.64797 4.76179 4.88063 4.99303 5.08595 5.11457 5.27731 5.38128 5.60235 5.68345 5.72981 5.80962 6.00200 6.17916 6.18981 6.64353 6.96907 7.08876 7.75691 8.73805 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.006281 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.162555 B = 4456.612324 C = 5844.221546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.015 4.015 3 Si 1.013 2.987 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.417 4.417 8 H 0.100 0.900 9 O -0.210 6.210 10 C 0.128 3.872 11 C -0.249 4.249 12 C -0.063 4.063 13 C -0.191 4.191 14 C -0.053 4.053 15 C -0.155 4.155 16 C 0.017 3.983 17 C -0.154 4.154 18 C 0.092 3.908 19 N -0.493 5.493 20 C 0.115 3.885 21 C 0.122 3.878 22 N -0.847 5.847 23 C -0.163 4.163 24 H 0.271 0.729 25 H 0.121 0.879 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.359 0.641 34 H 0.347 0.653 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -12.903 -1.478 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.214 4.214 3 Si 0.832 3.168 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.118 0.882 9 O -0.115 6.115 10 C 0.076 3.924 11 C -0.268 4.268 12 C -0.081 4.081 13 C -0.210 4.210 14 C -0.071 4.071 15 C -0.156 4.156 16 C 0.009 3.991 17 C -0.174 4.174 18 C -0.063 4.063 19 N -0.204 5.204 20 C -0.024 4.024 21 C -0.009 4.009 22 N -0.381 5.381 23 C -0.183 4.183 24 H 0.080 0.920 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.126 0.874 30 H 0.181 0.819 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.060 -12.298 -1.015 12.385 hybrid contribution 1.775 1.106 -0.535 2.158 sum 2.834 -11.192 -1.550 11.649 Atomic orbital electron populations 1.70181 1.07795 1.28691 1.47933 1.26458 0.96739 1.02389 0.95803 0.84727 0.77465 0.74742 0.79823 1.18352 1.19870 1.18253 1.21763 0.92481 0.81520 1.53585 0.88231 1.83963 1.35296 1.12087 1.80166 1.19904 0.91438 0.87465 0.93563 1.21285 0.92825 1.00518 1.12193 1.21294 1.00467 0.91442 0.94856 1.21128 0.93955 0.98282 1.07594 1.21145 0.94120 0.95938 0.95902 1.18144 0.91268 0.91725 1.14487 1.19151 0.92737 0.93754 0.93423 1.22137 0.95659 0.99205 1.00433 1.22723 0.91783 0.95315 0.96508 1.67443 1.41511 1.05650 1.05773 1.21465 0.90662 0.95323 0.94908 1.20519 0.99226 0.89047 0.92068 1.58497 1.29160 1.07547 1.42847 1.22159 0.94829 1.00781 1.00528 0.91976 0.86136 0.83515 0.82683 0.83465 0.87442 0.81942 0.89864 0.91594 0.82527 0.84019 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.67 21.62 0.30 -54.24 16 2 C -0.01 -0.83 5.49 84.84 0.47 -0.36 16 3 Si 1.01 42.19 29.55 68.60 2.03 44.21 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.42 -23.57 9.49 67.92 0.64 -22.92 16 8 H 0.10 5.17 5.21 -2.91 -0.02 5.15 16 9 O -0.21 -12.07 8.22 -21.50 -0.18 -12.24 16 10 C 0.13 6.15 6.58 22.82 0.15 6.30 16 11 C -0.25 -10.36 9.16 22.36 0.20 -10.16 16 12 C -0.06 -1.98 10.03 22.29 0.22 -1.76 16 13 C -0.19 -5.38 10.03 22.27 0.22 -5.15 16 14 C -0.05 -1.67 9.55 22.47 0.21 -1.46 16 15 C -0.15 -6.37 5.53 -19.93 -0.11 -6.48 16 16 C 0.02 0.71 5.29 -19.84 -0.10 0.61 16 17 C -0.15 -6.82 8.92 22.59 0.20 -6.62 16 18 C 0.09 3.74 11.17 84.60 0.94 4.69 16 19 N -0.49 -19.10 10.26 -184.18 -1.89 -20.99 16 20 C 0.12 3.86 6.29 42.48 0.27 4.13 16 21 C 0.12 2.98 7.09 85.56 0.61 3.59 16 22 N -0.85 -17.36 9.61 -190.01 -1.83 -19.19 16 23 C -0.16 -5.54 9.26 22.59 0.21 -5.33 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 26 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.11 5.26 7.79 -2.91 -0.02 5.24 16 30 H 0.16 5.90 8.06 -2.91 -0.02 5.87 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.36 5.18 9.08 -89.69 -0.81 4.36 16 34 H 0.35 6.38 8.99 -89.69 -0.81 5.57 16 35 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -71.45 307.98 2.09 -69.36 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.48 Total: 34.01 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.14 Total: -40.94 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.42 Total: -94.41 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.18 Total: -12.24 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.45 2.09 -69.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588003.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.735 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds