Wall clock time and date at job start Mon Mar 30 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47239 * 240.00432 * 3 2 1 5 5 H 1.48501 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46770 * 120.00337 * 3 2 1 7 7 C 1.38648 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.35700 * 116.99710 * 185.05585 * 9 7 2 11 11 C 1.38999 * 119.95001 * 354.45279 * 10 9 7 12 12 C 1.37835 * 120.04885 * 180.02562 * 11 10 9 13 13 C 1.39428 * 119.95194 * 359.97194 * 12 11 10 14 14 C 1.48327 * 120.05650 * 180.02562 * 13 12 11 15 15 C 1.39800 * 120.54701 * 180.02562 * 14 13 12 16 16 C 1.38398 * 118.31512 * 179.97438 * 15 14 13 17 17 C 1.38326 * 119.28260 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.47910 * 180.28239 * 17 16 15 19 19 N 1.46896 * 109.47728 * 94.72522 * 18 17 16 20 20 N 1.31894 * 121.03903 * 0.02562 * 17 16 15 21 21 C 1.31729 * 121.85499 * 359.97438 * 20 17 16 22 22 C 1.39437 * 119.89624 * 0.28252 * 13 12 11 23 23 C 1.37838 * 119.94515 * 359.46644 * 22 13 12 24 24 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97538 * 359.97438 * 11 10 9 26 26 H 1.08010 * 120.02217 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.83826 * 359.95158 * 15 14 13 28 28 H 1.07994 * 120.35788 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47441 * 214.72830 * 18 17 16 30 30 H 1.09005 * 109.47009 * 334.72298 * 18 17 16 31 31 H 1.00893 * 111.00533 * 180.02562 * 19 18 17 32 32 H 1.00905 * 110.99518 * 303.95400 * 19 18 17 33 33 H 1.08002 * 119.70666 * 180.02562 * 21 20 17 34 34 H 1.07999 * 120.02858 * 179.71810 * 22 13 12 35 35 H 1.07994 * 119.97579 * 180.25345 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0698 -3.5040 0.1055 11 6 3.4580 -3.4359 0.0914 12 6 4.2067 -4.5883 0.1985 13 6 3.5705 -5.8228 0.3215 14 6 4.3738 -7.0643 0.4373 15 6 3.7466 -8.3076 0.5606 16 6 4.5409 -9.4361 0.6651 17 6 5.9172 -9.2991 0.6439 18 6 6.7863 -10.5256 0.7509 19 7 7.1534 -10.9848 -0.5953 20 7 6.4808 -8.1124 0.5264 21 6 5.7662 -7.0105 0.4241 22 6 2.1777 -5.8892 0.3300 23 6 1.4332 -4.7336 0.2279 24 1 -0.4850 0.8400 0.0004 25 1 3.9504 -2.4795 -0.0042 26 1 5.2854 -4.5348 0.1879 27 1 2.6695 -8.3854 0.5743 28 1 4.0911 -10.4132 0.7613 29 1 7.6895 -10.2832 1.3109 30 1 6.2394 -11.3145 1.2674 31 1 7.7363 -11.8070 -0.5505 32 1 6.3317 -11.1545 -1.1559 33 1 6.2640 -6.0568 0.3290 34 1 1.6827 -6.8447 0.4206 35 1 0.3545 -4.7841 0.2385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:19 Heat of formation + Delta-G solvation = 30.063996 kcal Electronic energy + Delta-G solvation = -18782.735859 eV Core-core repulsion = 15746.074288 eV Total energy + Delta-G solvation = -3036.661571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23391 -38.99674 -36.77205 -34.92690 -32.72807 -32.29253 -31.34847 -30.28886 -28.20838 -25.83433 -24.84588 -23.83644 -22.21671 -21.46627 -20.54006 -18.15230 -17.45671 -16.75302 -16.27557 -15.95418 -15.30053 -14.77397 -14.59092 -14.35019 -13.90406 -13.82801 -13.55215 -13.43279 -13.29352 -12.84586 -12.67027 -12.27989 -11.84312 -11.67273 -11.58545 -11.05112 -11.02920 -10.78119 -10.53292 -9.74476 -9.52016 -9.24770 -9.22702 -8.95359 -8.72451 -8.36031 -7.07696 -6.59655 -4.15893 0.91498 1.39188 2.11145 2.40850 3.06673 3.07974 3.10577 3.85286 3.87265 4.27836 4.48470 4.57915 4.74640 4.94199 4.97290 5.00368 5.10241 5.17931 5.28355 5.40050 5.45637 5.56744 5.79539 5.84688 6.06246 6.11373 6.15930 6.40891 6.53168 6.72497 6.77348 6.83777 6.95367 7.11815 7.16446 7.22469 7.29046 7.64440 7.85076 8.16220 8.85170 9.52235 10.57248 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.047351 B = 0.003239 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.192123 B = 8643.888812 C = 9141.399063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.167 6.167 10 C 0.161 3.839 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.163 4.163 14 C -0.043 4.043 15 C -0.093 4.093 16 C -0.158 4.158 17 C 0.094 3.906 18 C 0.118 3.882 19 N -0.842 5.842 20 N -0.458 5.458 21 C 0.086 3.914 22 C -0.054 4.054 23 C -0.193 4.193 24 H 0.273 0.727 25 H 0.131 0.869 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.343 0.657 32 H 0.340 0.660 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -15.921 1.265 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.113 0.887 9 O -0.069 6.069 10 C 0.105 3.895 11 C -0.254 4.254 12 C -0.067 4.067 13 C -0.165 4.165 14 C -0.045 4.045 15 C -0.119 4.119 16 C -0.178 4.178 17 C -0.044 4.044 18 C -0.013 4.013 19 N -0.372 5.372 20 N -0.167 5.167 21 C -0.072 4.072 22 C -0.073 4.073 23 C -0.212 4.212 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.173 0.827 34 H 0.133 0.867 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.014 -14.922 1.170 17.472 hybrid contribution -1.067 -0.060 0.247 1.097 sum 7.947 -14.982 1.417 17.018 Atomic orbital electron populations 1.70026 1.06078 1.28206 1.44612 1.25357 0.95892 0.99059 0.96150 0.85734 0.78750 0.79365 0.79388 1.19298 1.20140 1.19305 1.21378 0.91998 0.80656 1.52845 0.88731 1.83952 1.34701 1.11659 1.76543 1.19501 0.90317 0.87966 0.91668 1.21104 0.93682 0.98983 1.11603 1.20815 0.98555 0.91377 0.95967 1.18062 0.92605 0.91124 1.14711 1.19856 0.94305 0.93451 0.96882 1.21576 1.00419 0.91564 0.98298 1.21790 0.94332 0.99237 1.02455 1.20902 0.91115 0.93210 0.99187 1.20507 0.98258 0.91809 0.90699 1.58573 1.24294 1.40734 1.13624 1.67342 1.40863 0.98131 1.10325 1.22843 0.90279 0.96626 0.97477 1.20674 0.92499 0.96902 0.97198 1.20144 0.99714 0.90117 1.11250 0.91667 0.85107 0.86892 0.84862 0.85595 0.89550 0.94259 0.84397 0.84718 0.82738 0.86744 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.27 13.67 55.48 0.76 -23.51 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.57 9.48 30.88 0.29 -10.27 16 8 H 0.10 2.33 5.19 -52.48 -0.27 2.06 16 9 O -0.17 -4.58 9.75 0.24 0.00 -4.58 16 10 C 0.16 3.73 6.65 -39.02 -0.26 3.47 16 11 C -0.23 -4.88 9.15 -39.45 -0.36 -5.24 16 12 C -0.05 -0.87 9.43 -39.29 -0.37 -1.25 16 13 C -0.16 -2.81 5.88 -104.86 -0.62 -3.43 16 14 C -0.04 -0.65 5.89 -104.75 -0.62 -1.27 16 15 C -0.09 -1.23 9.53 -38.94 -0.37 -1.60 16 16 C -0.16 -1.85 9.70 -39.49 -0.38 -2.23 16 17 C 0.09 1.21 6.29 -82.53 -0.52 0.69 16 18 C 0.12 1.16 7.09 -4.98 -0.04 1.12 16 19 N -0.84 -7.62 9.61 -11.41 -0.11 -7.73 16 20 N -0.46 -6.95 10.26 -9.18 -0.09 -7.05 16 21 C 0.09 1.30 10.60 -17.18 -0.18 1.12 16 22 C -0.05 -0.94 9.43 -39.28 -0.37 -1.31 16 23 C -0.19 -3.90 9.98 -39.44 -0.39 -4.29 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.13 2.69 5.62 -52.49 -0.30 2.40 16 26 H 0.11 1.70 6.23 -52.48 -0.33 1.37 16 27 H 0.13 1.51 6.32 -52.49 -0.33 1.18 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.30 8.04 -51.93 -0.42 -0.12 16 31 H 0.34 2.20 9.08 -39.30 -0.36 1.85 16 32 H 0.34 2.79 8.99 -39.29 -0.35 2.44 16 33 H 0.16 2.12 6.22 -52.49 -0.33 1.79 16 34 H 0.11 1.61 6.27 -52.49 -0.33 1.28 16 35 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -30.77 303.29 -7.59 -38.36 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.41 Total: 8.67 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -4.28 Total: -23.49 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.55 Total: -38.28 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: 0.00 Total: -4.58 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.77 -7.59 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.428 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds