Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86801 * 119.99963 * 2 1 4 4 H 1.48496 * 109.47239 * 240.00432 * 3 2 1 5 5 H 1.48501 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46770 * 120.00337 * 3 2 1 7 7 C 1.38648 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99651 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.35700 * 116.99710 * 185.05585 * 9 7 2 11 11 C 1.38999 * 119.95001 * 354.45279 * 10 9 7 12 12 C 1.37835 * 120.04885 * 180.02562 * 11 10 9 13 13 C 1.39428 * 119.95194 * 359.97194 * 12 11 10 14 14 C 1.48327 * 120.05650 * 180.02562 * 13 12 11 15 15 C 1.39800 * 120.54701 * 180.02562 * 14 13 12 16 16 C 1.38398 * 118.31512 * 179.97438 * 15 14 13 17 17 C 1.38326 * 119.28260 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.47910 * 180.28239 * 17 16 15 19 19 N 1.46896 * 109.47728 * 94.72522 * 18 17 16 20 20 N 1.31894 * 121.03903 * 0.02562 * 17 16 15 21 21 C 1.31729 * 121.85499 * 359.97438 * 20 17 16 22 22 C 1.39437 * 119.89624 * 0.28252 * 13 12 11 23 23 C 1.37838 * 119.94515 * 359.46644 * 22 13 12 24 24 H 0.97000 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97538 * 359.97438 * 11 10 9 26 26 H 1.08010 * 120.02217 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.83826 * 359.95158 * 15 14 13 28 28 H 1.07994 * 120.35788 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47441 * 214.72830 * 18 17 16 30 30 H 1.09005 * 109.47009 * 334.72298 * 18 17 16 31 31 H 1.00893 * 111.00533 * 180.02562 * 19 18 17 32 32 H 1.00905 * 110.99518 * 303.95400 * 19 18 17 33 33 H 1.08002 * 119.70666 * 180.02562 * 21 20 17 34 34 H 1.07999 * 120.02858 * 179.71810 * 22 13 12 35 35 H 1.07994 * 119.97579 * 180.25345 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0698 -3.5040 0.1055 11 6 3.4580 -3.4359 0.0914 12 6 4.2067 -4.5883 0.1985 13 6 3.5705 -5.8228 0.3215 14 6 4.3738 -7.0643 0.4373 15 6 3.7466 -8.3076 0.5606 16 6 4.5409 -9.4361 0.6651 17 6 5.9172 -9.2991 0.6439 18 6 6.7863 -10.5256 0.7509 19 7 7.1534 -10.9848 -0.5953 20 7 6.4808 -8.1124 0.5264 21 6 5.7662 -7.0105 0.4241 22 6 2.1777 -5.8892 0.3300 23 6 1.4332 -4.7336 0.2279 24 1 -0.4850 0.8400 0.0004 25 1 3.9504 -2.4795 -0.0042 26 1 5.2854 -4.5348 0.1879 27 1 2.6695 -8.3854 0.5743 28 1 4.0911 -10.4132 0.7613 29 1 7.6895 -10.2832 1.3109 30 1 6.2394 -11.3145 1.2674 31 1 7.7363 -11.8070 -0.5505 32 1 6.3317 -11.1545 -1.1559 33 1 6.2640 -6.0568 0.3290 34 1 1.6827 -6.8447 0.4206 35 1 0.3545 -4.7841 0.2385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = 8.685767 kcal Electronic energy + Delta-G solvation = -18783.662889 eV Core-core repulsion = 15746.074288 eV Total energy + Delta-G solvation = -3037.588601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40053 -40.57508 -38.33824 -35.82199 -34.40193 -33.60336 -32.55999 -31.75347 -29.53583 -27.51935 -26.05776 -25.04037 -23.47044 -22.84398 -21.88370 -19.87306 -19.05852 -17.80353 -17.46040 -17.18347 -16.36418 -16.18017 -16.02774 -15.60413 -15.54569 -15.23031 -14.71494 -14.53500 -14.48895 -14.25146 -13.95368 -13.59332 -13.44792 -13.13647 -12.73889 -12.61984 -12.44983 -12.27720 -12.14238 -11.23582 -11.03642 -10.69507 -10.32673 -10.17909 -9.88386 -9.59380 -8.62825 -8.50266 -6.17256 -0.27549 0.35568 0.55143 0.98609 1.35553 1.46495 1.51395 2.16284 2.66249 2.95569 3.22156 3.31414 3.43715 3.71303 3.80283 3.90910 3.97830 4.03236 4.12407 4.22387 4.42283 4.48123 4.53837 4.72051 4.78527 4.85450 4.98176 5.06547 5.10426 5.24255 5.27991 5.49806 5.64333 5.71977 5.80646 5.98599 6.09800 6.20285 6.61786 6.93997 7.10165 7.71747 8.71883 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.047351 B = 0.003239 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.192123 B = 8643.888812 C = 9141.399063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.224 6.224 10 C 0.122 3.878 11 C -0.241 4.241 12 C -0.055 4.055 13 C -0.135 4.135 14 C -0.072 4.072 15 C -0.085 4.085 16 C -0.152 4.152 17 C 0.096 3.904 18 C 0.118 3.882 19 N -0.855 5.855 20 N -0.486 5.486 21 C 0.081 3.919 22 C -0.050 4.050 23 C -0.201 4.201 24 H 0.274 0.726 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.358 0.642 32 H 0.346 0.654 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -19.412 1.617 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.129 6.129 10 C 0.071 3.929 11 C -0.260 4.260 12 C -0.073 4.073 13 C -0.137 4.137 14 C -0.074 4.074 15 C -0.110 4.110 16 C -0.172 4.172 17 C -0.042 4.042 18 C -0.013 4.013 19 N -0.388 5.388 20 N -0.195 5.195 21 C -0.076 4.076 22 C -0.067 4.067 23 C -0.220 4.220 24 H 0.083 0.917 25 H 0.143 0.857 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.183 0.817 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.071 -18.486 1.522 21.601 hybrid contribution -1.420 0.381 0.177 1.481 sum 9.650 -18.105 1.699 20.587 Atomic orbital electron populations 1.70167 1.08025 1.29059 1.48172 1.26592 0.96836 1.02752 0.95618 0.84657 0.77438 0.74239 0.79990 1.18102 1.19606 1.18154 1.21830 0.92666 0.81328 1.53392 0.87842 1.83928 1.36033 1.12641 1.80338 1.20058 0.91539 0.88040 0.93308 1.21200 0.93083 0.99984 1.11729 1.21129 1.00009 0.90722 0.95397 1.18423 0.92918 0.91859 1.10485 1.19764 0.94287 0.93348 1.00048 1.21929 1.01815 0.91002 0.96279 1.22176 0.93669 1.00548 1.00825 1.21591 0.92461 0.93431 0.96743 1.20567 0.97978 0.91344 0.91369 1.58510 1.24975 1.41933 1.13351 1.67418 1.41493 0.98935 1.11627 1.22982 0.90403 0.97208 0.97024 1.21069 0.92569 0.97443 0.95666 1.20413 1.00279 0.90187 1.11109 0.91677 0.85749 0.83992 0.82621 0.81696 0.90233 0.91178 0.82697 0.84091 0.82318 0.82662 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.38 13.67 21.61 0.30 -55.08 16 2 C -0.02 -1.10 5.49 84.83 0.47 -0.64 16 3 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.42 -23.79 9.48 67.92 0.64 -23.14 16 8 H 0.10 5.40 5.19 -2.91 -0.02 5.38 16 9 O -0.22 -13.17 9.75 -22.05 -0.22 -13.39 16 10 C 0.12 5.92 6.65 22.64 0.15 6.07 16 11 C -0.24 -10.29 9.15 22.36 0.20 -10.08 16 12 C -0.05 -1.90 9.43 22.46 0.21 -1.69 16 13 C -0.14 -4.34 5.88 -20.02 -0.12 -4.46 16 14 C -0.07 -1.97 5.89 -19.95 -0.12 -2.08 16 15 C -0.08 -1.83 9.53 22.69 0.22 -1.61 16 16 C -0.15 -2.76 9.70 22.33 0.22 -2.55 16 17 C 0.10 2.08 6.29 42.57 0.27 2.35 16 18 C 0.12 1.83 7.09 85.56 0.61 2.43 16 19 N -0.85 -12.33 9.61 -190.01 -1.83 -14.16 16 20 N -0.49 -13.32 10.26 -182.97 -1.88 -15.20 16 21 C 0.08 2.24 10.60 84.98 0.90 3.14 16 22 C -0.05 -1.61 9.43 22.46 0.21 -1.39 16 23 C -0.20 -8.20 9.98 22.36 0.22 -7.98 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.12 5.36 5.62 -2.91 -0.02 5.34 16 26 H 0.14 4.02 6.23 -2.91 -0.02 4.00 16 27 H 0.16 2.62 6.32 -2.91 -0.02 2.60 16 28 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 0.68 8.04 -2.38 -0.02 0.66 16 31 H 0.36 3.34 9.08 -89.70 -0.81 2.53 16 32 H 0.35 4.32 8.99 -89.69 -0.81 3.51 16 33 H 0.16 4.02 6.22 -2.91 -0.02 4.00 16 34 H 0.16 3.69 6.27 -2.91 -0.02 3.67 16 35 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -72.09 303.29 2.03 -70.06 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.46 Total: 25.28 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 4.08 Total: -41.63 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.41 Total: -84.44 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.22 Total: -13.39 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.09 2.03 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.743 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds