Wall clock time and date at job start Mon Mar 30 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38062 * 120.00994 * 2 1 4 4 C 1.38211 * 120.18564 * 180.28021 * 3 2 1 5 5 C 1.38843 * 120.19769 * 359.74300 * 4 3 2 6 6 O 1.35906 * 119.99442 * 179.97438 * 5 4 3 7 7 C 1.38485 * 120.00973 * 0.02562 * 5 4 3 8 8 C 1.39311 * 119.82089 * 359.97438 * 7 5 4 9 9 C 1.48330 * 120.10094 * 179.97438 * 8 7 5 10 10 C 1.39435 * 120.04938 * 309.99970 * 9 8 7 11 11 C 1.37832 * 119.95011 * 179.97438 * 10 9 8 12 12 C 1.39001 * 120.05079 * 0.25180 * 11 10 9 13 13 O 1.35699 * 119.95334 * 179.74778 * 12 11 10 14 14 C 1.34823 * 116.99565 * 354.45153 * 13 12 11 15 15 H 1.08004 * 119.99594 * 5.05847 * 14 13 12 16 16 C 1.38644 * 119.99687 * 185.05849 * 14 13 12 17 17 N 1.31565 * 119.99593 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00269 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47202 * 90.00247 * 18 16 14 20 20 H 1.48504 * 109.47137 * 210.00001 * 18 16 14 21 21 H 1.48494 * 109.47335 * 330.00074 * 18 16 14 22 22 C 1.39008 * 120.10415 * 359.49157 * 12 11 10 23 23 C 1.37841 * 120.04413 * 0.51318 * 22 12 11 24 24 H 1.08999 * 109.47128 * 270.20863 * 1 2 3 25 25 H 1.08994 * 109.47044 * 30.21259 * 1 2 3 26 26 H 1.08999 * 109.47083 * 150.21034 * 1 2 3 27 27 H 1.08001 * 119.90602 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.90444 * 179.71799 * 4 3 2 29 29 H 0.96689 * 114.00048 * 270.01935 * 6 5 4 30 30 H 1.08006 * 120.09034 * 179.97438 * 7 5 4 31 31 H 1.08002 * 120.02709 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.97964 * 179.97438 * 11 10 9 33 33 H 0.96998 * 119.99633 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.97687 * 180.25124 * 22 12 11 35 35 H 1.08005 * 120.02155 * 179.76838 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1955 0.0000 4 6 3.5796 1.1998 -0.0058 5 6 4.2816 0.0019 -0.0064 6 8 5.6407 0.0109 -0.0126 7 6 3.5973 -1.2020 -0.0016 8 6 2.2042 -1.2070 0.0043 9 6 1.4649 -2.4929 0.0089 10 6 1.7855 -3.4859 -0.9159 11 6 1.0975 -4.6803 -0.9094 12 6 0.0813 -4.8932 0.0147 13 8 -0.5982 -6.0678 0.0159 14 6 -0.3178 -6.9381 -0.9749 15 1 0.4758 -6.7219 -1.6749 16 6 -1.0481 -8.1104 -1.0951 17 7 -0.7748 -8.9594 -2.0622 18 14 -2.4210 -8.4838 0.1153 19 1 -3.6987 -7.9280 -0.3985 20 1 -2.5509 -9.9542 0.2783 21 1 -2.1050 -7.8663 1.4282 22 6 -0.2367 -3.9068 0.9411 23 6 0.4486 -2.7107 0.9383 24 1 -0.3633 0.0037 1.0276 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8919 -0.5106 27 1 1.6561 2.1301 0.0004 28 1 4.1152 2.1377 -0.0104 29 1 6.0299 0.0118 -0.8978 30 1 4.1421 -2.1346 -0.0024 31 1 2.5723 -3.3194 -1.6367 32 1 1.3452 -5.4496 -1.6258 33 1 -1.2855 -9.7798 -2.1461 34 1 -1.0239 -4.0759 1.6608 35 1 0.1988 -1.9431 1.6558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:00 Heat of formation + Delta-G solvation = -27.096051 kcal Electronic energy + Delta-G solvation = -19239.165678 eV Core-core repulsion = 16167.732709 eV Total energy + Delta-G solvation = -3071.432968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02120 -39.03803 -37.40824 -36.15266 -32.56179 -31.91537 -31.64340 -30.24078 -28.22295 -26.30839 -25.23282 -23.04883 -21.98745 -21.41534 -20.50223 -18.29462 -17.91284 -17.25141 -15.86019 -15.79123 -15.32647 -14.83262 -14.53229 -14.12025 -13.91377 -13.76730 -13.57653 -13.38688 -12.79012 -12.72919 -12.42429 -12.26928 -11.92314 -11.67396 -11.57825 -11.30922 -11.12596 -10.79250 -10.76778 -10.36191 -10.21166 -9.49043 -9.05791 -8.78606 -8.40499 -8.34686 -7.26956 -6.49721 -4.15772 1.15566 1.31856 2.06368 2.20189 3.17382 3.21166 3.35410 3.64273 4.17214 4.18992 4.41194 4.75304 4.87607 4.92321 5.02551 5.05695 5.26240 5.38981 5.51345 5.53776 5.72111 5.77668 5.83775 5.97852 6.06261 6.12510 6.21634 6.35175 6.39838 6.48573 6.65213 6.75284 6.77735 7.03354 7.13813 7.21551 7.50440 7.61564 7.71587 7.94891 8.84884 9.45995 10.57432 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.035270 B = 0.003929 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.692221 B = 7124.566141 C = 7632.969523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.104 4.104 4 C -0.156 4.156 5 C 0.096 3.904 6 O -0.502 6.502 7 C -0.138 4.138 8 C 0.005 3.995 9 C -0.152 4.152 10 C -0.053 4.053 11 C -0.223 4.223 12 C 0.165 3.835 13 O -0.212 6.212 14 C -0.391 4.391 15 H 0.108 0.892 16 C 0.065 3.935 17 N -0.875 5.875 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.194 4.194 23 C -0.055 4.055 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.387 0.613 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.281 0.719 34 H 0.119 0.881 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 17.124 2.705 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.174 4.174 5 C 0.052 3.948 6 O -0.311 6.311 7 C -0.157 4.157 8 C 0.005 3.995 9 C -0.153 4.153 10 C -0.071 4.071 11 C -0.242 4.242 12 C 0.112 3.888 13 O -0.116 6.116 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.512 5.512 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.213 4.213 23 C -0.073 4.073 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.242 0.758 30 H 0.146 0.854 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.957 16.783 3.352 17.818 hybrid contribution -0.267 -0.334 -0.249 0.495 sum 4.690 16.449 3.103 17.383 Atomic orbital electron populations 1.20884 0.90976 1.03074 1.02238 1.20031 0.96345 0.92102 1.00604 1.20795 0.93407 0.97472 1.00577 1.21311 0.94476 0.97504 1.04148 1.18357 0.82562 0.92268 1.01569 1.84823 1.16459 1.96558 1.33300 1.21530 0.93815 0.97747 1.02585 1.18592 0.91777 0.92302 0.96851 1.18195 1.01540 0.93833 1.01705 1.20813 0.97612 0.92116 0.96592 1.21212 1.00211 0.99129 1.03634 1.19225 0.90663 0.85653 0.93231 1.83558 1.57470 1.22886 1.47694 1.20802 1.19803 0.99138 1.06913 0.87474 1.24487 0.98070 0.94501 0.96877 1.69647 1.40594 1.10653 1.30346 0.86172 0.81305 0.77474 0.81928 1.19783 1.20682 1.18293 1.20146 1.04881 0.93493 1.02798 1.20689 0.93972 0.95752 0.96932 0.91278 0.92100 0.90393 0.85895 0.85948 0.75829 0.85390 0.87106 0.84697 0.90907 0.86251 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.45 36.01 0.30 -1.03 16 2 C -0.09 -1.18 5.87 -104.26 -0.61 -1.79 16 3 C -0.10 -1.19 9.68 -39.66 -0.38 -1.57 16 4 C -0.16 -1.79 9.98 -39.37 -0.39 -2.18 16 5 C 0.10 1.22 6.70 -39.27 -0.26 0.96 16 6 O -0.50 -5.63 13.50 -19.44 -0.26 -5.89 16 7 C -0.14 -1.94 9.44 -39.09 -0.37 -2.31 16 8 C 0.00 0.07 5.47 -104.92 -0.57 -0.50 16 9 C -0.15 -2.53 4.71 -104.86 -0.49 -3.03 16 10 C -0.05 -0.95 9.50 -39.28 -0.37 -1.32 16 11 C -0.22 -4.66 9.15 -39.45 -0.36 -5.02 16 12 C 0.17 3.70 6.65 -39.01 -0.26 3.44 16 13 O -0.21 -5.44 8.58 0.23 0.00 -5.44 16 14 C -0.39 -10.77 9.94 30.88 0.31 -10.46 16 15 H 0.11 3.01 5.42 -52.48 -0.28 2.72 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -24.78 13.96 55.48 0.77 -24.01 16 18 Si 0.91 21.19 28.62 -169.99 -4.86 16.32 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.19 -3.70 9.98 -39.44 -0.39 -4.09 16 23 C -0.06 -0.92 7.90 -39.28 -0.31 -1.23 16 24 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.08 1.03 6.46 -51.93 -0.34 0.69 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.39 2.43 9.06 45.56 0.41 2.84 16 30 H 0.13 1.77 8.04 -52.48 -0.42 1.35 16 31 H 0.11 1.74 8.04 -52.49 -0.42 1.32 16 32 H 0.14 2.96 5.62 -52.49 -0.30 2.67 16 33 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.12 1.64 6.87 -52.48 -0.36 1.28 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -29.96 302.49 -6.98 -36.94 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -2.92 Total: 5.98 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -4.27 Total: -28.46 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.77 Total: -24.01 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.26 Total: -11.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.96 -6.98 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds