Wall clock time and date at job start Mon Mar 30 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38062 * 120.00994 * 2 1 4 4 C 1.38211 * 120.18564 * 180.28021 * 3 2 1 5 5 C 1.38843 * 120.19769 * 359.74300 * 4 3 2 6 6 O 1.35906 * 119.99442 * 179.97438 * 5 4 3 7 7 C 1.38485 * 120.00973 * 0.02562 * 5 4 3 8 8 C 1.39311 * 119.82089 * 359.97438 * 7 5 4 9 9 C 1.48330 * 120.10094 * 179.97438 * 8 7 5 10 10 C 1.39435 * 120.04938 * 309.99970 * 9 8 7 11 11 C 1.37832 * 119.95011 * 179.97438 * 10 9 8 12 12 C 1.39001 * 120.05079 * 0.25180 * 11 10 9 13 13 O 1.35699 * 119.95334 * 179.74778 * 12 11 10 14 14 C 1.34823 * 116.99565 * 354.45153 * 13 12 11 15 15 H 1.08004 * 119.99594 * 5.05847 * 14 13 12 16 16 C 1.38644 * 119.99687 * 185.05849 * 14 13 12 17 17 N 1.31565 * 119.99593 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00269 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47202 * 90.00247 * 18 16 14 20 20 H 1.48504 * 109.47137 * 210.00001 * 18 16 14 21 21 H 1.48494 * 109.47335 * 330.00074 * 18 16 14 22 22 C 1.39008 * 120.10415 * 359.49157 * 12 11 10 23 23 C 1.37841 * 120.04413 * 0.51318 * 22 12 11 24 24 H 1.08999 * 109.47128 * 270.20863 * 1 2 3 25 25 H 1.08994 * 109.47044 * 30.21259 * 1 2 3 26 26 H 1.08999 * 109.47083 * 150.21034 * 1 2 3 27 27 H 1.08001 * 119.90602 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.90444 * 179.71799 * 4 3 2 29 29 H 0.96689 * 114.00048 * 270.01935 * 6 5 4 30 30 H 1.08006 * 120.09034 * 179.97438 * 7 5 4 31 31 H 1.08002 * 120.02709 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.97964 * 179.97438 * 11 10 9 33 33 H 0.96998 * 119.99633 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.97687 * 180.25124 * 22 12 11 35 35 H 1.08005 * 120.02155 * 179.76838 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1955 0.0000 4 6 3.5796 1.1998 -0.0058 5 6 4.2816 0.0019 -0.0064 6 8 5.6407 0.0109 -0.0126 7 6 3.5973 -1.2020 -0.0016 8 6 2.2042 -1.2070 0.0043 9 6 1.4649 -2.4929 0.0089 10 6 1.7855 -3.4859 -0.9159 11 6 1.0975 -4.6803 -0.9094 12 6 0.0813 -4.8932 0.0147 13 8 -0.5982 -6.0678 0.0159 14 6 -0.3178 -6.9381 -0.9749 15 1 0.4758 -6.7219 -1.6749 16 6 -1.0481 -8.1104 -1.0951 17 7 -0.7748 -8.9594 -2.0622 18 14 -2.4210 -8.4838 0.1153 19 1 -3.6987 -7.9280 -0.3985 20 1 -2.5509 -9.9542 0.2783 21 1 -2.1050 -7.8663 1.4282 22 6 -0.2367 -3.9068 0.9411 23 6 0.4486 -2.7107 0.9383 24 1 -0.3633 0.0037 1.0276 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8919 -0.5106 27 1 1.6561 2.1301 0.0004 28 1 4.1152 2.1377 -0.0104 29 1 6.0299 0.0118 -0.8978 30 1 4.1421 -2.1346 -0.0024 31 1 2.5723 -3.3194 -1.6367 32 1 1.3452 -5.4496 -1.6258 33 1 -1.2855 -9.7798 -2.1461 34 1 -1.0239 -4.0759 1.6608 35 1 0.1988 -1.9431 1.6558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:59 Heat of formation + Delta-G solvation = -45.371217 kcal Electronic energy + Delta-G solvation = -19239.958148 eV Core-core repulsion = 16167.732709 eV Total energy + Delta-G solvation = -3072.225439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24683 -40.47386 -38.67534 -37.41000 -34.51192 -33.00408 -32.83010 -31.70569 -29.60278 -27.53148 -26.86033 -24.30223 -23.50295 -22.51874 -21.75808 -19.88466 -19.35498 -18.86996 -16.91512 -16.87654 -16.53337 -16.37414 -15.88979 -15.72271 -15.55531 -15.24772 -14.56611 -14.44109 -14.41047 -14.12194 -14.02622 -13.62055 -13.21322 -12.93566 -12.74616 -12.60250 -12.46852 -12.33695 -12.12115 -11.96607 -11.37501 -11.30545 -10.93494 -9.97848 -9.87963 -9.39921 -8.80035 -8.51926 -6.24580 0.03620 0.35070 0.52366 0.80718 1.31897 1.35857 1.52199 2.27237 2.60173 2.80574 3.01674 3.12524 3.32264 3.76860 3.96727 4.05017 4.10088 4.14389 4.26676 4.47265 4.50044 4.65300 4.79708 4.86538 4.88019 4.91863 5.02562 5.18678 5.26584 5.31664 5.41839 5.48538 5.51793 5.60349 5.72588 5.81200 5.85545 5.96571 6.17006 6.81959 6.88120 7.54406 8.59439 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.035270 B = 0.003929 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.692221 B = 7124.566141 C = 7632.969523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.099 4.099 4 C -0.148 4.148 5 C 0.093 3.907 6 O -0.511 6.511 7 C -0.151 4.151 8 C -0.024 4.024 9 C -0.123 4.123 10 C -0.059 4.059 11 C -0.235 4.235 12 C 0.127 3.873 13 O -0.240 6.240 14 C -0.402 4.402 15 H 0.082 0.918 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.262 1.262 22 C -0.188 4.188 23 C -0.048 4.048 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.408 0.592 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.285 0.715 34 H 0.136 0.864 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 21.046 4.240 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.166 4.166 5 C 0.049 3.951 6 O -0.324 6.324 7 C -0.169 4.169 8 C -0.024 4.024 9 C -0.123 4.123 10 C -0.077 4.077 11 C -0.254 4.254 12 C 0.077 3.923 13 O -0.147 6.147 14 C -0.478 4.478 15 H 0.099 0.901 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.192 1.192 21 H -0.186 1.186 22 C -0.207 4.207 23 C -0.066 4.066 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.267 0.733 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.038 20.753 4.879 21.906 hybrid contribution 0.008 -1.080 -0.719 1.298 sum 5.046 19.672 4.160 20.731 Atomic orbital electron populations 1.20925 0.89989 1.03180 1.03195 1.20229 0.97141 0.91932 0.99999 1.21144 0.93507 0.98045 0.99021 1.21658 0.94783 0.97995 1.02179 1.18441 0.83185 0.92212 1.01277 1.84770 1.15800 1.96475 1.35347 1.21557 0.93711 0.98353 1.03316 1.18513 0.92082 0.91813 0.99966 1.18547 1.00107 0.94131 0.99537 1.21015 0.97794 0.91350 0.97540 1.21194 1.00879 0.99947 1.03406 1.19742 0.91536 0.85923 0.95074 1.83505 1.59264 1.24121 1.47775 1.20726 1.19562 1.00169 1.07380 0.90083 1.25293 1.00470 0.94249 0.98704 1.69732 1.42462 1.11559 1.32420 0.85210 0.78376 0.77821 0.79286 1.18918 1.19244 1.18584 1.20456 1.05157 0.93227 1.01825 1.21071 0.93066 0.95391 0.97082 0.89831 0.89820 0.92543 0.82708 0.83417 0.73347 0.86188 0.85252 0.87071 0.90493 0.84655 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.45 71.24 0.60 -1.63 16 2 C -0.09 -2.06 5.87 -19.63 -0.12 -2.18 16 3 C -0.10 -1.77 9.68 22.22 0.22 -1.56 16 4 C -0.15 -2.73 9.98 22.41 0.22 -2.50 16 5 C 0.09 2.07 6.70 22.47 0.15 2.22 16 6 O -0.51 -9.97 13.50 -92.49 -1.25 -11.22 16 7 C -0.15 -3.92 9.44 22.59 0.21 -3.70 16 8 C -0.02 -0.64 5.47 -20.06 -0.11 -0.75 16 9 C -0.12 -3.90 4.71 -20.02 -0.09 -3.99 16 10 C -0.06 -2.12 9.50 22.46 0.21 -1.91 16 11 C -0.24 -10.37 9.15 22.36 0.20 -10.17 16 12 C 0.13 5.87 6.65 22.64 0.15 6.02 16 13 O -0.24 -12.88 8.58 -22.11 -0.19 -13.07 16 14 C -0.40 -23.58 9.94 67.92 0.68 -22.91 16 15 H 0.08 4.99 5.42 -2.91 -0.02 4.97 16 16 C 0.01 0.67 5.49 84.83 0.47 1.13 16 17 N -0.92 -54.78 13.96 21.61 0.30 -54.47 16 18 Si 0.97 44.94 28.62 68.60 1.96 46.90 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 22 C -0.19 -7.02 9.98 22.36 0.22 -6.80 16 23 C -0.05 -1.50 7.90 22.46 0.18 -1.32 16 24 H 0.08 1.37 7.50 -2.39 -0.02 1.35 16 25 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 26 H 0.06 1.33 6.46 -2.39 -0.02 1.32 16 27 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.41 3.95 9.06 -74.06 -0.67 3.28 16 30 H 0.12 3.21 8.04 -2.91 -0.02 3.19 16 31 H 0.13 4.08 8.04 -2.91 -0.02 4.06 16 32 H 0.11 5.38 5.62 -2.91 -0.02 5.37 16 33 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.15 3.66 6.87 -2.91 -0.02 3.64 16 Total: -1.00 -68.20 302.49 4.48 -63.72 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.46 Total: 18.19 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 3.20 Total: -50.04 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.30 Total: -54.47 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.44 Total: -24.29 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.96 Total: 46.90 kcal Total: -68.20 4.48 -63.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.346 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds