Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48499 * 109.47189 * 95.20688 * 3 2 1 5 5 H 1.48505 * 109.46995 * 215.20354 * 3 2 1 6 6 H 1.48500 * 109.47534 * 335.20495 * 3 2 1 7 7 C 1.40174 * 119.99471 * 179.72541 * 2 1 3 8 8 H 1.08001 * 120.00426 * 23.52812 * 7 2 1 9 9 C 1.40796 * 119.99824 * 203.52246 * 7 2 1 10 10 N 1.33974 * 120.29110 * 344.24968 * 9 7 2 11 11 C 1.31605 * 119.90451 * 179.97438 * 10 9 7 12 12 C 1.39195 * 120.49935 * 359.97438 * 11 10 9 13 13 N 1.31999 * 120.59268 * 0.02562 * 12 11 10 14 14 C 1.32858 * 120.07943 * 359.71509 * 13 12 11 15 15 C 1.47791 * 120.25386 * 180.30241 * 14 13 12 16 16 C 1.39688 * 120.15627 * 134.19965 * 15 14 13 17 17 C 1.37920 * 119.84336 * 179.74387 * 16 15 14 18 18 C 1.38401 * 120.15365 * 0.53212 * 17 16 15 19 19 C 1.50699 * 119.84829 * 179.75861 * 18 17 16 20 20 C 1.52993 * 109.47664 * 269.98456 * 19 18 17 21 21 O 1.42900 * 109.47495 * 179.97438 * 20 19 18 22 22 C 1.38407 * 120.30999 * 359.74635 * 18 17 16 23 23 C 1.37915 * 120.15560 * 359.97020 * 22 18 17 24 24 H 0.97006 * 119.99545 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.74801 * 179.97438 * 11 10 9 26 26 H 1.08002 * 119.70248 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.07674 * 0.02562 * 16 15 14 28 28 H 1.07996 * 119.91991 * 180.25199 * 17 16 15 29 29 H 1.09008 * 109.46803 * 29.98569 * 19 18 17 30 30 H 1.08994 * 109.46955 * 149.97719 * 19 18 17 31 31 H 1.09008 * 109.46692 * 299.99580 * 20 19 18 32 32 H 1.08999 * 109.47089 * 59.99450 * 20 19 18 33 33 H 0.96694 * 113.99995 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.92397 * 180.02562 * 22 18 17 35 35 H 1.07997 * 120.08296 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5985 1.9828 1.3943 5 1 3.4792 1.4742 -0.8072 6 1 1.3878 2.6819 -0.5871 7 6 2.0076 -1.2140 0.0058 8 1 1.5349 -2.1122 -0.3632 9 6 3.3278 -1.2624 0.4927 10 7 4.0300 -0.1330 0.6551 11 6 5.2633 -0.1871 1.1112 12 6 5.8464 -1.4107 1.4279 13 7 5.1726 -2.5355 1.2755 14 6 3.9242 -2.5076 0.8217 15 6 3.1639 -3.7640 0.6559 16 6 1.8462 -3.8521 1.1108 17 6 1.1409 -5.0261 0.9480 18 6 1.7394 -6.1188 0.3454 19 6 0.9642 -7.4000 0.1760 20 6 1.1699 -8.2871 1.4053 21 8 0.4343 -9.5017 1.2448 22 6 3.0467 -6.0405 -0.1025 23 6 3.7619 -4.8710 0.0485 24 1 -0.4850 0.8401 0.0004 25 1 5.8272 0.7248 1.2408 26 1 6.8592 -1.4401 1.8017 27 1 1.3792 -3.0014 1.5848 28 1 0.1207 -5.0942 1.2956 29 1 -0.0960 -7.1713 0.0662 30 1 1.3168 -7.9231 -0.7128 31 1 2.2301 -8.5158 1.5150 32 1 0.8173 -7.7639 2.2941 33 1 0.5189 -10.1139 1.9884 34 1 3.5075 -6.8969 -0.5722 35 1 4.7817 -4.8110 -0.3018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243845462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -7.056377 kcal Electronic energy + Delta-G solvation = -19536.719586 eV Core-core repulsion = 16498.448355 eV Total energy + Delta-G solvation = -3038.271231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.62997 -38.51337 -36.85284 -34.29928 -33.53416 -32.40358 -30.79916 -30.28588 -27.87629 -26.22834 -23.92744 -22.55455 -21.87545 -21.60766 -20.16790 -17.97766 -17.52021 -16.44581 -16.27858 -15.47126 -15.22666 -14.56741 -14.26785 -14.15532 -14.12796 -13.59918 -13.32656 -12.90246 -12.66101 -12.17197 -12.07042 -11.81027 -11.73824 -11.47233 -11.24399 -11.10506 -10.77136 -10.49705 -10.39470 -9.98784 -9.82961 -9.49061 -9.28905 -8.53338 -8.29837 -7.79697 -7.48987 -7.19337 -4.93005 1.59532 2.04746 2.31393 2.61917 3.27460 3.30547 3.49027 4.12523 4.20327 4.31608 4.46483 5.03298 5.19518 5.24935 5.29606 5.32967 5.51386 5.56217 5.61621 5.65177 5.82981 5.96736 6.05637 6.08810 6.17201 6.30787 6.40950 6.53196 6.65611 6.70939 6.88606 7.02257 7.12057 7.35042 7.43191 7.52497 7.60189 7.84694 8.15367 8.21807 8.82416 9.28110 9.63901 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.005285 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.586916 B = 5296.692999 C = 6288.567128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.081 3.919 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.255 1.255 6 H -0.324 1.324 7 C -0.382 4.382 8 H 0.111 0.889 9 C 0.204 3.796 10 N -0.543 5.543 11 C 0.113 3.887 12 C -0.121 4.121 13 N -0.403 5.403 14 C -0.006 4.006 15 C 0.019 3.981 16 C -0.089 4.089 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.073 4.073 20 C 0.080 3.920 21 O -0.579 6.579 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.296 0.704 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.113 0.887 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -8.463 2.126 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.146 4.146 3 Si 0.825 3.175 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.256 1.256 7 C -0.411 4.411 8 H 0.129 0.871 9 C 0.081 3.919 10 N -0.264 5.264 11 C -0.055 4.055 12 C -0.280 4.280 13 N -0.114 5.114 14 C -0.155 4.155 15 C 0.018 3.982 16 C -0.108 4.108 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.110 4.110 20 C 0.003 3.997 21 O -0.384 6.384 22 C -0.140 4.140 23 C -0.124 4.124 24 H 0.106 0.894 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.131 0.869 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.879 -8.123 1.551 8.316 hybrid contribution 0.587 0.621 0.564 1.023 sum 1.466 -7.502 2.115 7.931 Atomic orbital electron populations 1.69607 1.08860 1.31961 1.28143 1.26534 0.94897 1.04040 0.89173 0.84694 0.77758 0.74864 0.80233 1.20248 1.18018 1.25641 1.19677 0.93808 0.97445 1.30219 0.87150 1.19195 0.93464 0.87481 0.91721 1.67674 1.07938 1.29308 1.21463 1.23191 0.92275 0.97906 0.92113 1.22453 1.01211 0.88956 1.15374 1.67727 1.06055 1.30700 1.06947 1.20013 0.92256 0.92546 1.10713 1.18313 0.92788 0.91285 0.95826 1.21422 0.93658 0.97434 0.98318 1.20860 0.99509 0.92805 1.00369 1.19546 0.94644 0.94779 1.01661 1.20369 1.00536 0.92555 0.97538 1.22223 0.94756 0.84724 0.98044 1.86454 1.73576 1.30734 1.47641 1.20782 0.93982 0.97636 1.01573 1.21183 0.99485 0.92443 0.99316 0.89375 0.84616 0.84730 0.84868 0.86553 0.90649 0.90829 0.93518 0.93419 0.77654 0.86880 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.74 13.92 55.56 0.77 -17.97 16 2 C 0.08 2.01 5.50 -17.31 -0.10 1.91 16 3 Si 0.99 22.62 25.59 -169.99 -4.35 18.27 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.25 -6.02 6.58 56.52 0.37 -5.65 16 6 H -0.32 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.38 -9.71 7.79 -37.89 -0.30 -10.00 16 8 H 0.11 2.85 6.01 -52.49 -0.32 2.53 16 9 C 0.20 5.14 6.43 -84.55 -0.54 4.60 16 10 N -0.54 -13.32 5.07 -10.73 -0.05 -13.37 16 11 C 0.11 2.41 11.22 -17.29 -0.19 2.21 16 12 C -0.12 -2.55 11.22 -17.12 -0.19 -2.74 16 13 N -0.40 -9.32 10.32 -8.97 -0.09 -9.41 16 14 C -0.01 -0.15 6.40 -82.11 -0.53 -0.68 16 15 C 0.02 0.41 5.20 -104.90 -0.55 -0.13 16 16 C -0.09 -1.81 7.65 -39.16 -0.30 -2.11 16 17 C -0.12 -2.02 9.68 -39.64 -0.38 -2.41 16 18 C -0.11 -1.67 5.14 -104.50 -0.54 -2.21 16 19 C -0.07 -0.96 5.71 -27.89 -0.16 -1.12 16 20 C 0.08 0.93 7.03 37.15 0.26 1.19 16 21 O -0.58 -6.49 13.66 -35.23 -0.48 -6.97 16 22 C -0.12 -1.98 9.68 -39.64 -0.38 -2.36 16 23 C -0.11 -2.00 9.69 -39.15 -0.38 -2.38 16 24 H 0.30 6.55 8.29 -40.82 -0.34 6.22 16 25 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 26 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 27 H 0.13 2.88 6.95 -52.49 -0.36 2.51 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.07 0.99 8.08 -51.92 -0.42 0.57 16 30 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.38 2.40 9.12 45.56 0.42 2.82 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -28.86 300.79 -7.17 -36.03 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.23 Total: 5.09 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.27 Total: -16.21 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.63 Total: -40.75 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.48 Total: -6.97 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.35 Total: 18.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.86 -7.17 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243845462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.977 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds