Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48499 * 109.47189 * 95.20688 * 3 2 1 5 5 H 1.48505 * 109.46995 * 215.20354 * 3 2 1 6 6 H 1.48500 * 109.47534 * 335.20495 * 3 2 1 7 7 C 1.40174 * 119.99471 * 179.72541 * 2 1 3 8 8 H 1.08001 * 120.00426 * 23.52812 * 7 2 1 9 9 C 1.40796 * 119.99824 * 203.52246 * 7 2 1 10 10 N 1.33974 * 120.29110 * 344.24968 * 9 7 2 11 11 C 1.31605 * 119.90451 * 179.97438 * 10 9 7 12 12 C 1.39195 * 120.49935 * 359.97438 * 11 10 9 13 13 N 1.31999 * 120.59268 * 0.02562 * 12 11 10 14 14 C 1.32858 * 120.07943 * 359.71509 * 13 12 11 15 15 C 1.47791 * 120.25386 * 180.30241 * 14 13 12 16 16 C 1.39688 * 120.15627 * 134.19965 * 15 14 13 17 17 C 1.37920 * 119.84336 * 179.74387 * 16 15 14 18 18 C 1.38401 * 120.15365 * 0.53212 * 17 16 15 19 19 C 1.50699 * 119.84829 * 179.75861 * 18 17 16 20 20 C 1.52993 * 109.47664 * 269.98456 * 19 18 17 21 21 O 1.42900 * 109.47495 * 179.97438 * 20 19 18 22 22 C 1.38407 * 120.30999 * 359.74635 * 18 17 16 23 23 C 1.37915 * 120.15560 * 359.97020 * 22 18 17 24 24 H 0.97006 * 119.99545 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.74801 * 179.97438 * 11 10 9 26 26 H 1.08002 * 119.70248 * 180.02562 * 12 11 10 27 27 H 1.08001 * 120.07674 * 0.02562 * 16 15 14 28 28 H 1.07996 * 119.91991 * 180.25199 * 17 16 15 29 29 H 1.09008 * 109.46803 * 29.98569 * 19 18 17 30 30 H 1.08994 * 109.46955 * 149.97719 * 19 18 17 31 31 H 1.09008 * 109.46692 * 299.99580 * 20 19 18 32 32 H 1.08999 * 109.47089 * 59.99450 * 20 19 18 33 33 H 0.96694 * 113.99995 * 179.97438 * 21 20 19 34 34 H 1.07998 * 119.92397 * 180.02562 * 22 18 17 35 35 H 1.07997 * 120.08296 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.5985 1.9828 1.3943 5 1 3.4792 1.4742 -0.8072 6 1 1.3878 2.6819 -0.5871 7 6 2.0076 -1.2140 0.0058 8 1 1.5349 -2.1122 -0.3632 9 6 3.3278 -1.2624 0.4927 10 7 4.0300 -0.1330 0.6551 11 6 5.2633 -0.1871 1.1112 12 6 5.8464 -1.4107 1.4279 13 7 5.1726 -2.5355 1.2755 14 6 3.9242 -2.5076 0.8217 15 6 3.1639 -3.7640 0.6559 16 6 1.8462 -3.8521 1.1108 17 6 1.1409 -5.0261 0.9480 18 6 1.7394 -6.1188 0.3454 19 6 0.9642 -7.4000 0.1760 20 6 1.1699 -8.2871 1.4053 21 8 0.4343 -9.5017 1.2448 22 6 3.0467 -6.0405 -0.1025 23 6 3.7619 -4.8710 0.0485 24 1 -0.4850 0.8401 0.0004 25 1 5.8272 0.7248 1.2408 26 1 6.8592 -1.4401 1.8017 27 1 1.3792 -3.0014 1.5848 28 1 0.1207 -5.0942 1.2956 29 1 -0.0960 -7.1713 0.0662 30 1 1.3168 -7.9231 -0.7128 31 1 2.2301 -8.5158 1.5150 32 1 0.8173 -7.7639 2.2941 33 1 0.5189 -10.1139 1.9884 34 1 3.5075 -6.8969 -0.5722 35 1 4.7817 -4.8110 -0.3018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243845462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = -26.040386 kcal Electronic energy + Delta-G solvation = -19537.542795 eV Core-core repulsion = 16498.448355 eV Total energy + Delta-G solvation = -3039.094440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32837 -39.94196 -37.78111 -36.11968 -35.01959 -34.07559 -32.31375 -31.73236 -29.28853 -27.94458 -25.36755 -24.12702 -23.26963 -23.16976 -21.55254 -19.82542 -18.43406 -18.15433 -17.85567 -17.10798 -16.45634 -16.01965 -15.83125 -15.53256 -15.18436 -15.11841 -14.96364 -14.60001 -14.17518 -13.77357 -13.55614 -13.43638 -13.21607 -12.91895 -12.77140 -12.57516 -12.14125 -11.99555 -11.84273 -11.59835 -11.32134 -11.10458 -10.84493 -10.19227 -9.73585 -9.50873 -9.17622 -8.98630 -6.77406 0.03147 0.58469 0.61317 0.91659 1.42917 1.49089 1.65740 2.39077 2.47939 2.86590 3.38700 3.47528 3.63278 3.96262 3.97064 4.14406 4.18528 4.25584 4.32017 4.39715 4.47624 4.63914 4.64702 4.69595 4.76576 4.87905 5.02552 5.09517 5.09781 5.23999 5.28771 5.53552 5.70236 5.74817 5.86192 5.94878 6.16292 6.34664 6.39348 6.92202 7.03605 7.49612 7.85081 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.005285 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.586916 B = 5296.692999 C = 6288.567128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.056 3.944 3 Si 1.037 2.963 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.311 1.311 7 C -0.409 4.409 8 H 0.093 0.907 9 C 0.190 3.810 10 N -0.564 5.564 11 C 0.102 3.898 12 C -0.109 4.109 13 N -0.419 5.419 14 C -0.020 4.020 15 C -0.014 4.014 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.071 4.071 20 C 0.084 3.916 21 O -0.592 6.592 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.305 0.695 25 H 0.178 0.822 26 H 0.175 0.825 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.398 0.602 34 H 0.148 0.852 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -9.824 2.327 10.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.168 4.168 3 Si 0.869 3.131 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.111 0.889 9 C 0.066 3.934 10 N -0.286 5.286 11 C -0.064 4.064 12 C -0.268 4.268 13 N -0.131 5.131 14 C -0.167 4.167 15 C -0.015 4.015 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.109 4.109 20 C 0.007 3.993 21 O -0.401 6.401 22 C -0.132 4.132 23 C -0.131 4.131 24 H 0.116 0.884 25 H 0.195 0.805 26 H 0.192 0.808 27 H 0.125 0.875 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.248 0.752 34 H 0.165 0.835 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.955 -9.508 1.762 9.865 hybrid contribution 0.391 0.901 0.567 1.134 sum 2.346 -8.607 2.329 9.220 Atomic orbital electron populations 1.69594 1.09252 1.32921 1.29447 1.26961 0.95356 1.05385 0.89099 0.84035 0.76572 0.73233 0.79252 1.21118 1.19391 1.24264 1.19560 0.94535 0.97290 1.32548 0.88927 1.19382 0.93673 0.88475 0.91820 1.67654 1.09363 1.29363 1.22218 1.23892 0.91502 0.99914 0.91121 1.23212 1.02450 0.88360 1.12775 1.67835 1.06032 1.31720 1.07488 1.20360 0.92739 0.93232 1.10384 1.18413 0.93370 0.91538 0.98195 1.21268 0.93736 0.97857 0.99422 1.21072 1.00180 0.92239 1.00192 1.19832 0.94539 0.95306 0.99383 1.20378 1.00123 0.91429 0.98936 1.22089 0.95354 0.84860 0.97016 1.86393 1.73551 1.30897 1.49237 1.21118 0.93940 0.97559 1.00543 1.21259 0.99748 0.92723 0.99329 0.88409 0.80471 0.80750 0.87534 0.84791 0.90514 0.89743 0.92641 0.93275 0.75184 0.83465 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.86 13.92 21.86 0.30 -39.55 16 2 C 0.06 2.88 5.50 85.33 0.47 3.35 16 3 Si 1.04 47.06 25.59 68.60 1.76 48.82 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.27 -12.58 6.58 99.48 0.65 -11.92 16 6 H -0.31 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.41 -21.74 7.79 23.37 0.18 -21.56 16 8 H 0.09 5.10 6.01 -2.91 -0.02 5.08 16 9 C 0.19 9.82 6.43 40.36 0.26 10.08 16 10 N -0.56 -27.63 5.07 -187.85 -0.95 -28.58 16 11 C 0.10 4.16 11.22 84.96 0.95 5.11 16 12 C -0.11 -4.34 11.22 84.90 0.95 -3.39 16 13 N -0.42 -19.12 10.32 -182.30 -1.88 -21.00 16 14 C -0.02 -0.99 6.40 42.43 0.27 -0.72 16 15 C -0.01 -0.61 5.20 -20.05 -0.10 -0.71 16 16 C -0.10 -4.35 7.65 22.54 0.17 -4.18 16 17 C -0.12 -4.07 9.68 22.23 0.22 -3.86 16 18 C -0.09 -2.67 5.14 -19.79 -0.10 -2.77 16 19 C -0.07 -1.68 5.71 29.85 0.17 -1.51 16 20 C 0.08 1.71 7.03 71.98 0.51 2.22 16 21 O -0.59 -11.45 13.66 -148.98 -2.04 -13.49 16 22 C -0.11 -3.47 9.68 22.23 0.22 -3.25 16 23 C -0.11 -4.19 9.69 22.55 0.22 -3.97 16 24 H 0.30 13.78 8.29 -92.70 -0.77 13.01 16 25 H 0.18 5.61 8.06 -2.91 -0.02 5.58 16 26 H 0.18 5.46 8.06 -2.91 -0.02 5.44 16 27 H 0.11 4.96 6.95 -2.91 -0.02 4.94 16 28 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.08 1.82 8.08 -2.38 -0.02 1.80 16 30 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.40 3.86 9.12 -74.06 -0.68 3.18 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -63.20 300.79 1.96 -61.23 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.39 Total: 17.73 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.38 Total: -25.16 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.53 Total: -89.13 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -2.04 Total: -13.49 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.76 Total: 48.82 kcal Total: -63.20 1.96 -61.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243845462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.193 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds