Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46902 * 90.00085 * 3 2 1 5 5 H 1.48496 * 109.46812 * 210.00273 * 3 2 1 6 6 H 1.48499 * 109.47013 * 330.00069 * 3 2 1 7 7 C 1.40046 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00121 * 9.47316 * 7 2 1 9 9 C 1.41327 * 119.99925 * 189.47353 * 7 2 1 10 10 C 1.40866 * 120.14938 * 196.80968 * 9 7 2 11 11 N 1.31854 * 119.96200 * 179.74846 * 10 9 7 12 12 C 1.32203 * 120.28571 * 0.53018 * 11 10 9 13 13 C 1.39995 * 120.29582 * 359.72235 * 12 11 10 14 14 C 1.48309 * 119.98289 * 180.02562 * 13 12 11 15 15 C 1.39388 * 120.12443 * 184.70534 * 14 13 12 16 16 C 1.38000 * 119.86882 * 179.72468 * 15 14 13 17 17 C 1.38331 * 120.12740 * 0.57613 * 16 15 14 18 18 C 1.50700 * 119.87565 * 179.70120 * 17 16 15 19 19 C 1.52994 * 109.47236 * 269.97929 * 18 17 16 20 20 O 1.42902 * 109.47566 * 179.97438 * 19 18 17 21 21 C 1.38333 * 120.25290 * 359.67329 * 17 16 15 22 22 C 1.37996 * 120.12761 * 0.04942 * 21 17 16 23 23 N 1.32536 * 120.03326 * 0.02562 * 13 12 11 24 24 H 0.97000 * 119.99986 * 174.92340 * 1 2 3 25 25 H 1.07997 * 120.01593 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.85348 * 179.74554 * 12 11 10 27 27 H 1.08002 * 120.06548 * 359.97418 * 15 14 13 28 28 H 1.08006 * 119.93712 * 180.25299 * 16 15 14 29 29 H 1.09006 * 109.47236 * 29.97414 * 18 17 16 30 30 H 1.08994 * 109.47524 * 149.97296 * 18 17 16 31 31 H 1.08998 * 109.46883 * 299.99897 * 19 18 17 32 32 H 1.09000 * 109.47417 * 59.99738 * 19 18 17 33 33 H 0.96695 * 114.00420 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.93608 * 180.02562 * 21 17 16 35 35 H 1.08003 * 120.06340 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0464 1.4001 5 1 3.5388 1.4402 -0.7001 6 1 1.4387 2.6527 -0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 1.4786 -2.1417 -0.1549 9 6 3.4064 -1.2213 0.2009 10 6 4.1637 -2.3584 -0.1422 11 7 5.4692 -2.3604 0.0427 12 6 6.0711 -1.3027 0.5591 13 6 5.3288 -0.1685 0.9091 14 6 6.0112 1.0145 1.4874 15 6 5.2653 2.1066 1.9275 16 6 5.9053 3.2023 2.4700 17 6 7.2851 3.2230 2.5665 18 6 7.9786 4.4252 3.1536 19 6 8.2966 5.4250 2.0400 20 8 8.9537 6.5653 2.5968 21 6 8.0308 2.1441 2.1265 22 6 7.4013 1.0407 1.5876 23 7 4.0166 -0.1514 0.7239 24 1 -0.4850 -0.8367 -0.0743 25 1 3.6758 -3.2267 -0.5598 26 1 7.1402 -1.3135 0.7114 27 1 4.1883 2.0938 1.8478 28 1 5.3282 4.0475 2.8151 29 1 7.3276 4.8966 3.8900 30 1 8.9045 4.1113 3.6355 31 1 8.9476 4.9537 1.3037 32 1 7.3707 5.7390 1.5582 33 1 9.1861 7.2420 1.9464 34 1 9.1078 2.1655 2.2047 35 1 7.9845 0.1991 1.2441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243846701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -10.057897 kcal Electronic energy + Delta-G solvation = -19410.267724 eV Core-core repulsion = 16371.866336 eV Total energy + Delta-G solvation = -3038.401387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82802 -38.79639 -37.04363 -34.34086 -33.78467 -32.44504 -30.88280 -30.62931 -27.98375 -25.98887 -24.12615 -23.00680 -22.12241 -21.40415 -20.28434 -18.59802 -17.72719 -16.63244 -16.17040 -15.74008 -15.42981 -14.83494 -14.39965 -14.33558 -14.21269 -13.81531 -13.42613 -13.05233 -12.83697 -12.55418 -12.36215 -11.98609 -11.68810 -11.44804 -11.25531 -11.04112 -10.98661 -10.57879 -10.16243 -10.13390 -9.82693 -9.45919 -9.26844 -8.78608 -8.71264 -7.91191 -7.67964 -7.33598 -5.00564 1.08322 1.64833 2.35063 2.58632 3.31396 3.43339 3.73711 3.88977 4.12264 4.15619 4.50005 4.79174 4.85312 5.00678 5.11887 5.15102 5.25404 5.35249 5.38158 5.49398 5.60075 5.72128 5.81783 5.88230 6.03306 6.04708 6.14991 6.34252 6.47744 6.62646 6.70685 6.78452 6.98574 7.16959 7.21487 7.24952 7.37894 7.80554 7.95980 8.33827 8.74241 9.22048 9.77823 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.005370 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.623815 B = 5212.709018 C = 6296.104961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.047 3.953 3 Si 1.129 2.871 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.318 1.318 7 C -0.459 4.459 8 H 0.090 0.910 9 C 0.204 3.796 10 C -0.040 4.040 11 N -0.422 5.422 12 C -0.099 4.099 13 C 0.158 3.842 14 C -0.026 4.026 15 C -0.097 4.097 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.076 4.076 19 C 0.079 3.921 20 O -0.578 6.578 21 C -0.120 4.120 22 C -0.100 4.100 23 N -0.527 5.527 24 H 0.288 0.712 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.379 0.621 34 H 0.121 0.879 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 9.048 2.877 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.176 4.176 3 Si 0.962 3.038 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.250 1.250 7 C -0.492 4.492 8 H 0.108 0.892 9 C 0.078 3.922 10 C -0.211 4.211 11 N -0.133 5.133 12 C -0.255 4.255 13 C 0.015 3.985 14 C -0.027 4.027 15 C -0.116 4.116 16 C -0.138 4.138 17 C -0.091 4.091 18 C -0.113 4.113 19 C 0.002 3.998 20 O -0.384 6.384 21 C -0.138 4.138 22 C -0.119 4.119 23 N -0.249 5.249 24 H 0.099 0.901 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.226 0.774 34 H 0.139 0.861 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.584 10.208 3.485 15.828 hybrid contribution 0.001 -1.715 -0.595 1.815 sum 11.585 8.493 2.890 14.652 Atomic orbital electron populations 1.70580 1.08112 1.33313 1.29478 1.27667 0.95329 1.05817 0.88803 0.82562 0.72947 0.70408 0.77929 1.20338 1.20097 1.24982 1.20734 0.90913 0.96888 1.40675 0.89191 1.19387 0.94830 0.88379 0.89614 1.23247 0.89751 1.00286 1.07798 1.67717 1.11273 1.26414 1.07920 1.22508 0.99421 0.91802 1.11794 1.20309 0.90841 0.92767 0.94595 1.18721 0.92630 0.93118 0.98276 1.21834 1.01882 0.92148 0.95706 1.21006 0.93690 0.98550 1.00513 1.19680 0.93683 0.95408 1.00347 1.20417 1.00919 0.92621 0.97379 1.22193 0.95983 0.86257 0.95383 1.86443 1.80695 1.31754 1.39461 1.20860 0.99363 0.93433 1.00097 1.21223 0.93485 0.98309 0.98928 1.67765 1.08510 1.28389 1.20253 0.90055 0.84170 0.84548 0.84117 0.86007 0.90390 0.90456 0.93389 0.93290 0.77401 0.86059 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 13.65 55.55 0.76 -19.82 16 2 C 0.05 1.21 5.52 -17.34 -0.10 1.12 16 3 Si 1.13 26.46 24.53 -169.99 -4.17 22.29 16 4 H -0.28 -6.15 5.54 56.52 0.31 -5.84 16 5 H -0.27 -6.60 6.39 56.52 0.36 -6.24 16 6 H -0.32 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.46 -11.90 9.57 -37.73 -0.36 -12.26 16 8 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.20 5.18 6.16 -84.84 -0.52 4.66 16 10 C -0.04 -0.95 10.98 -16.55 -0.18 -1.13 16 11 N -0.42 -9.83 10.47 -12.06 -0.13 -9.95 16 12 C -0.10 -2.13 10.61 -16.73 -0.18 -2.31 16 13 C 0.16 3.55 6.73 -82.76 -0.56 2.99 16 14 C -0.03 -0.49 5.87 -104.90 -0.62 -1.11 16 15 C -0.10 -1.79 9.50 -39.24 -0.37 -2.16 16 16 C -0.12 -1.78 9.68 -39.63 -0.38 -2.16 16 17 C -0.09 -1.19 5.14 -104.55 -0.54 -1.72 16 18 C -0.08 -0.82 5.71 -27.89 -0.16 -0.98 16 19 C 0.08 0.78 7.03 37.15 0.26 1.04 16 20 O -0.58 -5.56 13.66 -35.23 -0.48 -6.04 16 21 C -0.12 -1.56 9.68 -39.63 -0.38 -1.95 16 22 C -0.10 -1.55 9.42 -39.24 -0.37 -1.92 16 23 N -0.53 -13.10 4.53 -7.50 -0.03 -13.14 16 24 H 0.29 7.09 8.73 -40.82 -0.36 6.74 16 25 H 0.14 3.03 8.06 -52.49 -0.42 2.61 16 26 H 0.14 2.49 6.22 -52.49 -0.33 2.16 16 27 H 0.14 2.86 4.09 -52.49 -0.21 2.64 16 28 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.38 1.90 9.12 45.56 0.42 2.32 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.75 6.22 -52.48 -0.33 1.42 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -29.38 296.53 -7.15 -36.53 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.11 Total: 3.56 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -4.46 Total: -17.89 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.60 Total: -42.91 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.48 Total: -6.04 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -4.17 Total: 22.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.38 -7.15 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243846701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.471 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds