Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48498 * 109.46902 * 90.00085 * 3 2 1 5 5 H 1.48496 * 109.46812 * 210.00273 * 3 2 1 6 6 H 1.48499 * 109.47013 * 330.00069 * 3 2 1 7 7 C 1.40046 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00121 * 9.47316 * 7 2 1 9 9 C 1.41327 * 119.99925 * 189.47353 * 7 2 1 10 10 C 1.40866 * 120.14938 * 196.80968 * 9 7 2 11 11 N 1.31854 * 119.96200 * 179.74846 * 10 9 7 12 12 C 1.32203 * 120.28571 * 0.53018 * 11 10 9 13 13 C 1.39995 * 120.29582 * 359.72235 * 12 11 10 14 14 C 1.48309 * 119.98289 * 180.02562 * 13 12 11 15 15 C 1.39388 * 120.12443 * 184.70534 * 14 13 12 16 16 C 1.38000 * 119.86882 * 179.72468 * 15 14 13 17 17 C 1.38331 * 120.12740 * 0.57613 * 16 15 14 18 18 C 1.50700 * 119.87565 * 179.70120 * 17 16 15 19 19 C 1.52994 * 109.47236 * 269.97929 * 18 17 16 20 20 O 1.42902 * 109.47566 * 179.97438 * 19 18 17 21 21 C 1.38333 * 120.25290 * 359.67329 * 17 16 15 22 22 C 1.37996 * 120.12761 * 0.04942 * 21 17 16 23 23 N 1.32536 * 120.03326 * 0.02562 * 13 12 11 24 24 H 0.97000 * 119.99986 * 174.92340 * 1 2 3 25 25 H 1.07997 * 120.01593 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.85348 * 179.74554 * 12 11 10 27 27 H 1.08002 * 120.06548 * 359.97418 * 15 14 13 28 28 H 1.08006 * 119.93712 * 180.25299 * 16 15 14 29 29 H 1.09006 * 109.47236 * 29.97414 * 18 17 16 30 30 H 1.08994 * 109.47524 * 149.97296 * 18 17 16 31 31 H 1.08998 * 109.46883 * 299.99897 * 19 18 17 32 32 H 1.09000 * 109.47417 * 59.99738 * 19 18 17 33 33 H 0.96695 * 114.00420 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.93608 * 180.02562 * 21 17 16 35 35 H 1.08003 * 120.06340 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4888 2.0464 1.4001 5 1 3.5388 1.4402 -0.7001 6 1 1.4387 2.6527 -0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 1.4786 -2.1417 -0.1549 9 6 3.4064 -1.2213 0.2009 10 6 4.1637 -2.3584 -0.1422 11 7 5.4692 -2.3604 0.0427 12 6 6.0711 -1.3027 0.5591 13 6 5.3288 -0.1685 0.9091 14 6 6.0112 1.0145 1.4874 15 6 5.2653 2.1066 1.9275 16 6 5.9053 3.2023 2.4700 17 6 7.2851 3.2230 2.5665 18 6 7.9786 4.4252 3.1536 19 6 8.2966 5.4250 2.0400 20 8 8.9537 6.5653 2.5968 21 6 8.0308 2.1441 2.1265 22 6 7.4013 1.0407 1.5876 23 7 4.0166 -0.1514 0.7239 24 1 -0.4850 -0.8367 -0.0743 25 1 3.6758 -3.2267 -0.5598 26 1 7.1402 -1.3135 0.7114 27 1 4.1883 2.0938 1.8478 28 1 5.3282 4.0475 2.8151 29 1 7.3276 4.8966 3.8900 30 1 8.9045 4.1113 3.6355 31 1 8.9476 4.9537 1.3037 32 1 7.3707 5.7390 1.5582 33 1 9.1861 7.2420 1.9464 34 1 9.1078 2.1655 2.2047 35 1 7.9845 0.1991 1.2441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243846701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = -29.942116 kcal Electronic energy + Delta-G solvation = -19411.129968 eV Core-core repulsion = 16371.866336 eV Total energy + Delta-G solvation = -3039.263632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47084 -40.11392 -37.80721 -36.22182 -35.17494 -34.10335 -32.29572 -31.92064 -29.24905 -27.77999 -25.48906 -24.46820 -23.31440 -22.91915 -21.56072 -20.51695 -18.55072 -18.12986 -17.82161 -17.31335 -16.41916 -16.17841 -15.98715 -15.54973 -15.33240 -15.18459 -15.00185 -14.60479 -14.37440 -14.11332 -13.58440 -13.32483 -13.02870 -12.88736 -12.79065 -12.32207 -12.19979 -11.98900 -11.90839 -11.66289 -11.24566 -11.09362 -10.84315 -10.45516 -9.89193 -9.79834 -9.29377 -9.13717 -6.96354 -0.34565 0.47343 0.54871 0.94103 1.42101 1.55299 1.85418 2.24767 2.47374 2.81703 3.29821 3.37034 3.51542 3.80703 3.86799 4.01300 4.08540 4.15599 4.24405 4.38419 4.41862 4.51093 4.59379 4.62868 4.71397 4.88849 4.98135 4.99412 5.15537 5.16811 5.26799 5.36174 5.45953 5.62365 5.64693 5.87348 6.01710 6.09295 6.41557 6.90074 6.91348 7.37650 7.82302 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.005370 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.623815 B = 5212.709018 C = 6296.104961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.024 3.976 3 Si 1.156 2.844 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.313 1.313 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.192 3.808 10 C -0.059 4.059 11 N -0.428 5.428 12 C -0.088 4.088 13 C 0.149 3.851 14 C -0.063 4.063 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.072 4.072 18 C -0.075 4.075 19 C 0.081 3.919 20 O -0.593 6.593 21 C -0.110 4.110 22 C -0.093 4.093 23 N -0.544 5.544 24 H 0.288 0.712 25 H 0.153 0.847 26 H 0.177 0.823 27 H 0.113 0.887 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.399 0.601 34 H 0.161 0.839 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.623 10.710 3.775 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.195 4.195 3 Si 0.987 3.013 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.244 1.244 7 C -0.523 4.523 8 H 0.099 0.901 9 C 0.065 3.935 10 C -0.227 4.227 11 N -0.139 5.139 12 C -0.245 4.245 13 C 0.006 3.994 14 C -0.065 4.065 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.073 4.073 18 C -0.112 4.112 19 C 0.003 3.997 20 O -0.402 6.402 21 C -0.127 4.127 22 C -0.112 4.112 23 N -0.266 5.266 24 H 0.099 0.901 25 H 0.171 0.829 26 H 0.194 0.806 27 H 0.131 0.869 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.249 0.751 34 H 0.178 0.822 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.213 11.859 4.373 19.779 hybrid contribution -0.808 -2.139 -0.783 2.416 sum 14.405 9.721 3.590 17.745 Atomic orbital electron populations 1.70590 1.08285 1.33345 1.31606 1.28262 0.95582 1.07242 0.88414 0.82204 0.71634 0.69109 0.78357 1.19259 1.21535 1.24438 1.20719 0.91580 0.96765 1.43248 0.90050 1.19552 0.94942 0.89314 0.89680 1.23398 0.90187 1.00477 1.08657 1.67796 1.10832 1.27125 1.08153 1.23224 1.01207 0.90792 1.09312 1.20983 0.90170 0.94488 0.93714 1.18746 0.94249 0.92442 1.01050 1.21721 1.00796 0.93668 0.97610 1.21195 0.94893 0.97944 0.99947 1.19984 0.92915 0.96176 0.98194 1.20442 1.01237 0.91844 0.97710 1.22119 0.96304 0.86315 0.94924 1.86387 1.80651 1.32301 1.40813 1.21278 1.01247 0.92077 0.98117 1.21441 0.91802 0.99724 0.98243 1.67751 1.10120 1.28335 1.20380 0.90109 0.82936 0.80588 0.86881 0.84227 0.90228 0.89107 0.92404 0.93403 0.75146 0.82186 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 13.65 21.84 0.30 -43.52 16 2 C 0.02 1.30 5.52 85.29 0.47 1.77 16 3 Si 1.16 55.18 24.53 68.60 1.68 56.87 16 4 H -0.27 -12.06 5.54 99.48 0.55 -11.51 16 5 H -0.29 -14.18 6.39 99.48 0.64 -13.54 16 6 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 7 C -0.49 -26.52 9.57 23.47 0.22 -26.29 16 8 H 0.08 4.38 8.06 -2.91 -0.02 4.35 16 9 C 0.19 10.02 6.16 40.24 0.25 10.26 16 10 C -0.06 -2.85 10.98 85.33 0.94 -1.92 16 11 N -0.43 -19.47 10.47 -192.06 -2.01 -21.48 16 12 C -0.09 -3.62 10.61 85.06 0.90 -2.72 16 13 C 0.15 6.59 6.73 42.15 0.28 6.87 16 14 C -0.06 -2.31 5.87 -20.04 -0.12 -2.43 16 15 C -0.12 -4.28 9.50 22.49 0.21 -4.07 16 16 C -0.12 -3.33 9.68 22.24 0.22 -3.12 16 17 C -0.07 -1.59 5.14 -19.82 -0.10 -1.69 16 18 C -0.08 -1.28 5.71 29.85 0.17 -1.11 16 19 C 0.08 1.25 7.03 71.98 0.51 1.76 16 20 O -0.59 -9.19 13.66 -148.98 -2.04 -11.22 16 21 C -0.11 -2.33 9.68 22.23 0.22 -2.11 16 22 C -0.09 -2.52 9.42 22.49 0.21 -2.31 16 23 N -0.54 -27.39 4.53 -177.64 -0.81 -28.19 16 24 H 0.29 14.82 8.73 -92.71 -0.81 14.01 16 25 H 0.15 6.75 8.06 -2.91 -0.02 6.72 16 26 H 0.18 5.73 6.22 -2.91 -0.02 5.71 16 27 H 0.11 4.65 4.09 -2.91 -0.01 4.64 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.08 1.38 8.08 -2.38 -0.02 1.36 16 30 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.40 2.61 9.12 -74.06 -0.68 1.94 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.15 3.31 6.22 -2.91 -0.02 3.30 16 Total: -1.00 -64.80 296.53 1.70 -63.10 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.19 Total: 11.55 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 4.38 Total: -27.10 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -2.52 Total: -93.20 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -2.04 Total: -11.22 kcal Atomic # 14 Polarization: 55.18 SS G_CDS: 1.68 Total: 56.87 kcal Total: -64.80 1.70 -63.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243846701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.154 kcal (2) G-P(sol) polarization free energy of solvation -64.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds