Wall clock time and date at job start Mon Mar 30 2020 01:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35839 * 116.99958 * 2 1 4 4 C 1.38462 * 120.08656 * 359.72039 * 3 2 1 5 5 C 1.38683 * 120.00661 * 180.29571 * 4 3 2 6 6 O 1.35865 * 119.90300 * 179.97438 * 5 4 3 7 7 C 1.38920 * 120.19248 * 359.96103 * 5 4 3 8 8 C 1.37888 * 120.17692 * 0.03953 * 7 5 4 9 9 C 1.39349 * 119.99121 * 359.97438 * 8 7 5 10 10 C 1.48311 * 120.09538 * 179.97438 * 9 8 7 11 11 C 1.39774 * 120.00060 * 130.02221 * 10 9 8 12 12 C 1.38378 * 120.37809 * 179.97438 * 11 10 9 13 13 C 1.37731 * 120.37756 * 359.97438 * 12 11 10 14 14 C 1.40768 * 119.99823 * 0.02562 * 13 12 11 15 15 C 1.41425 * 120.18325 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99980 * 150.20056 * 15 14 13 17 17 C 1.39929 * 120.00153 * 330.19990 * 15 14 13 18 18 N 1.30833 * 120.00076 * 161.72240 * 17 15 14 19 19 Si 1.86801 * 120.00013 * 341.72598 * 17 15 14 20 20 H 1.48495 * 109.47187 * 95.40966 * 19 17 15 21 21 H 1.48502 * 109.46944 * 215.41142 * 19 17 15 22 22 H 1.48507 * 109.46882 * 335.40810 * 19 17 15 23 23 C 1.38768 * 120.00679 * 309.74614 * 10 9 8 24 24 H 1.08999 * 109.47229 * 299.99954 * 1 2 3 25 25 H 1.08998 * 109.47082 * 60.00083 * 1 2 3 26 26 H 1.09002 * 109.46953 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99919 * 0.27632 * 4 3 2 28 28 H 0.96697 * 114.00019 * 269.97770 * 6 5 4 29 29 H 1.07994 * 119.91148 * 180.02562 * 7 5 4 30 30 H 1.08000 * 120.01021 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.81643 * 359.95268 * 11 10 9 32 32 H 1.07998 * 119.81437 * 180.02562 * 12 11 10 33 33 H 1.08005 * 120.00184 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99959 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.19155 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2934 2.3727 -0.0058 5 6 1.9247 3.6075 -0.0120 6 8 1.1844 4.7467 -0.0183 7 6 3.3118 3.6829 -0.0116 8 6 4.0687 2.5303 -0.0058 9 6 3.4421 1.2856 0.0002 10 6 4.2539 0.0444 0.0058 11 6 3.9851 -0.9622 0.9376 12 6 4.7373 -2.1236 0.9495 13 6 5.7589 -2.3012 0.0431 14 6 6.0433 -1.2977 -0.9023 15 6 7.0911 -1.4761 -1.8352 16 1 7.0328 -1.0112 -2.8083 17 6 8.2035 -2.2549 -1.4975 18 7 8.9871 -2.7186 -2.4372 19 14 8.5698 -2.6328 0.2948 20 1 7.9922 -3.9538 0.6503 21 1 10.0397 -2.6628 0.5040 22 1 7.9688 -1.5820 1.1550 23 6 5.2766 -0.1202 -0.9176 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2148 2.3178 -0.0059 28 1 0.9707 5.0721 -0.9035 29 1 3.7987 4.6468 -0.0160 30 1 5.1469 2.5921 -0.0059 31 1 3.1861 -0.8327 1.6526 32 1 4.5214 -2.8957 1.6732 33 1 6.3419 -3.2103 0.0575 34 1 9.7579 -3.2587 -2.2031 35 1 5.4844 0.6539 -1.6416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243978239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:23 Heat of formation + Delta-G solvation = -39.600983 kcal Electronic energy + Delta-G solvation = -19641.082990 eV Core-core repulsion = 16569.107768 eV Total energy + Delta-G solvation = -3071.975223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22015 -38.22534 -37.72215 -35.91616 -33.58381 -31.42374 -30.33878 -29.97683 -28.17909 -26.85056 -25.08637 -22.87071 -22.12577 -20.58107 -20.38850 -18.79754 -17.49503 -16.79357 -16.04153 -15.90032 -15.59138 -15.23265 -14.70659 -14.50596 -13.98210 -13.72931 -13.65379 -12.92795 -12.73888 -12.40101 -12.13722 -11.94680 -11.87089 -11.48957 -11.29911 -10.84708 -10.73556 -10.68196 -10.54844 -10.25918 -9.79480 -9.57247 -9.15080 -8.69519 -8.16180 -7.62929 -7.23111 -6.89825 -4.44126 1.24397 1.54633 2.64937 2.67776 3.14575 3.24832 3.35334 3.42655 3.78202 4.02485 4.23059 4.54179 4.95309 5.03986 5.16517 5.19757 5.25636 5.44194 5.49135 5.57732 5.81660 5.91923 6.08255 6.27909 6.34413 6.45795 6.52097 6.63089 6.73730 6.86693 6.96812 7.18681 7.41775 7.47703 7.65806 7.67671 7.80374 7.90540 8.12868 8.39802 8.68771 8.85112 10.13146 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.005000 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.077977 B = 5598.591162 C = 6129.589698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.294 6.294 3 C 0.149 3.851 4 C -0.238 4.238 5 C 0.125 3.875 6 O -0.501 6.501 7 C -0.180 4.180 8 C -0.060 4.060 9 C -0.057 4.057 10 C -0.021 4.021 11 C -0.205 4.205 12 C -0.084 4.084 13 C -0.232 4.232 14 C 0.091 3.909 15 C -0.452 4.452 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.813 5.813 19 Si 0.910 3.090 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.244 1.244 23 C -0.187 4.187 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.387 0.613 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.284 0.716 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 8.287 4.035 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.103 3.897 4 C -0.257 4.257 5 C 0.081 3.919 6 O -0.311 6.311 7 C -0.198 4.198 8 C -0.078 4.078 9 C -0.057 4.057 10 C -0.021 4.021 11 C -0.224 4.224 12 C -0.102 4.102 13 C -0.251 4.251 14 C 0.088 3.912 15 C -0.481 4.481 16 H 0.107 0.893 17 C -0.133 4.133 18 N -0.438 5.438 19 Si 0.737 3.263 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.167 1.167 23 C -0.206 4.206 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.148 0.852 28 H 0.243 0.757 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.201 7.911 4.502 15.222 hybrid contribution -0.094 -0.078 0.136 0.183 sum -12.296 7.833 4.637 15.298 Atomic orbital electron populations 1.23049 0.79342 1.03794 1.00846 1.86285 1.20330 1.26031 1.88030 1.18850 0.91443 0.83888 0.95557 1.21295 1.00235 0.91801 1.12387 1.18132 0.89295 0.84751 0.99726 1.84786 1.72907 1.40143 1.33290 1.21208 0.92788 0.99098 1.06742 1.21049 1.00325 0.90032 0.96369 1.18536 0.89429 0.94403 1.03350 1.18191 0.95091 0.91753 0.97055 1.20339 1.03558 0.95502 1.03022 1.20525 0.95817 0.96233 0.97602 1.21093 1.01969 0.99702 1.02326 1.17635 0.92476 0.90027 0.91080 1.19437 1.01250 1.26104 1.01281 0.89267 1.26109 0.95452 0.91835 0.99890 1.69703 1.13520 1.25207 1.35338 0.86339 0.76280 0.80549 0.83177 1.19746 1.21959 1.16750 1.21069 0.99848 0.98054 1.01643 0.92990 0.92998 0.88315 0.85202 0.75744 0.85488 0.84468 0.88750 0.88787 0.88301 0.90591 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.83 8.83 -19.24 -0.17 -5.00 16 3 C 0.15 2.48 6.59 -38.90 -0.26 2.23 16 4 C -0.24 -3.36 8.96 -39.33 -0.35 -3.71 16 5 C 0.13 1.71 6.70 -39.16 -0.26 1.45 16 6 O -0.50 -5.73 13.49 -19.32 -0.26 -5.99 16 7 C -0.18 -2.52 9.97 -39.46 -0.39 -2.91 16 8 C -0.06 -0.96 9.49 -39.30 -0.37 -1.34 16 9 C -0.06 -1.05 5.48 -104.74 -0.57 -1.62 16 10 C -0.02 -0.45 5.26 -104.98 -0.55 -1.00 16 11 C -0.20 -4.43 8.78 -38.96 -0.34 -4.77 16 12 C -0.08 -1.86 10.01 -39.72 -0.40 -2.26 16 13 C -0.23 -5.68 7.17 -38.81 -0.28 -5.96 16 14 C 0.09 2.33 5.10 -106.87 -0.55 1.78 16 15 C -0.45 -12.34 9.57 -37.74 -0.36 -12.70 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.09 2.26 5.40 -17.34 -0.09 2.16 16 18 N -0.81 -21.92 13.93 55.55 0.77 -21.14 16 19 Si 0.91 21.05 24.52 -169.99 -4.17 16.89 16 20 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.24 -5.79 6.86 56.52 0.39 -5.40 16 23 C -0.19 -4.39 9.24 -38.52 -0.36 -4.75 16 24 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.13 1.53 6.29 -52.49 -0.33 1.20 16 28 H 0.39 2.48 9.06 45.56 0.41 2.89 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.14 2.11 8.04 -52.49 -0.42 1.69 16 31 H 0.09 1.89 7.67 -52.48 -0.40 1.49 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.10 2.42 4.72 -52.48 -0.25 2.17 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 35 H 0.10 2.27 8.04 -52.48 -0.42 1.84 16 LS Contribution 298.75 15.07 4.50 4.50 Total: -1.00 -30.41 298.75 -6.54 -36.95 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.07 Total: 5.93 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -4.15 Total: -32.13 kcal Atomic # 7 Polarization: -21.92 SS G_CDS: 0.77 Total: -21.14 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.43 Total: -10.99 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.17 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.41 -6.54 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243978239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.653 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds