Wall clock time and date at job start Mon Mar 30 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35839 * 116.99958 * 2 1 4 4 C 1.38462 * 120.08656 * 359.72039 * 3 2 1 5 5 C 1.38683 * 120.00661 * 180.29571 * 4 3 2 6 6 O 1.35865 * 119.90300 * 179.97438 * 5 4 3 7 7 C 1.38920 * 120.19248 * 359.96103 * 5 4 3 8 8 C 1.37888 * 120.17692 * 0.03953 * 7 5 4 9 9 C 1.39349 * 119.99121 * 359.97438 * 8 7 5 10 10 C 1.48311 * 120.09538 * 179.97438 * 9 8 7 11 11 C 1.39774 * 120.00060 * 130.02221 * 10 9 8 12 12 C 1.38378 * 120.37809 * 179.97438 * 11 10 9 13 13 C 1.37731 * 120.37756 * 359.97438 * 12 11 10 14 14 C 1.40768 * 119.99823 * 0.02562 * 13 12 11 15 15 C 1.41425 * 120.18325 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99980 * 150.20056 * 15 14 13 17 17 C 1.39929 * 120.00153 * 330.19990 * 15 14 13 18 18 N 1.30833 * 120.00076 * 161.72240 * 17 15 14 19 19 Si 1.86801 * 120.00013 * 341.72598 * 17 15 14 20 20 H 1.48495 * 109.47187 * 95.40966 * 19 17 15 21 21 H 1.48502 * 109.46944 * 215.41142 * 19 17 15 22 22 H 1.48507 * 109.46882 * 335.40810 * 19 17 15 23 23 C 1.38768 * 120.00679 * 309.74614 * 10 9 8 24 24 H 1.08999 * 109.47229 * 299.99954 * 1 2 3 25 25 H 1.08998 * 109.47082 * 60.00083 * 1 2 3 26 26 H 1.09002 * 109.46953 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.99919 * 0.27632 * 4 3 2 28 28 H 0.96697 * 114.00019 * 269.97770 * 6 5 4 29 29 H 1.07994 * 119.91148 * 180.02562 * 7 5 4 30 30 H 1.08000 * 120.01021 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.81643 * 359.95268 * 11 10 9 32 32 H 1.07998 * 119.81437 * 180.02562 * 12 11 10 33 33 H 1.08005 * 120.00184 * 180.02562 * 13 12 11 34 34 H 0.96996 * 119.99959 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.19155 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2934 2.3727 -0.0058 5 6 1.9247 3.6075 -0.0120 6 8 1.1844 4.7467 -0.0183 7 6 3.3118 3.6829 -0.0116 8 6 4.0687 2.5303 -0.0058 9 6 3.4421 1.2856 0.0002 10 6 4.2539 0.0444 0.0058 11 6 3.9851 -0.9622 0.9376 12 6 4.7373 -2.1236 0.9495 13 6 5.7589 -2.3012 0.0431 14 6 6.0433 -1.2977 -0.9023 15 6 7.0911 -1.4761 -1.8352 16 1 7.0328 -1.0112 -2.8083 17 6 8.2035 -2.2549 -1.4975 18 7 8.9871 -2.7186 -2.4372 19 14 8.5698 -2.6328 0.2948 20 1 7.9922 -3.9538 0.6503 21 1 10.0397 -2.6628 0.5040 22 1 7.9688 -1.5820 1.1550 23 6 5.2766 -0.1202 -0.9176 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2148 2.3178 -0.0059 28 1 0.9707 5.0721 -0.9035 29 1 3.7987 4.6468 -0.0160 30 1 5.1469 2.5921 -0.0059 31 1 3.1861 -0.8327 1.6526 32 1 4.5214 -2.8957 1.6732 33 1 6.3419 -3.2103 0.0575 34 1 9.7579 -3.2587 -2.2031 35 1 5.4844 0.6539 -1.6416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243978239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:22 Heat of formation + Delta-G solvation = -59.448590 kcal Electronic energy + Delta-G solvation = -19641.943647 eV Core-core repulsion = 16569.107768 eV Total energy + Delta-G solvation = -3072.835879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38981 -39.46494 -39.22768 -37.09686 -35.48012 -32.97377 -32.08081 -31.19646 -29.50286 -27.90452 -27.00043 -24.26352 -23.32250 -22.19954 -22.09978 -19.84099 -19.25728 -17.91281 -17.68939 -17.15313 -16.68560 -16.63669 -16.36010 -15.73264 -15.54085 -15.04841 -14.95355 -14.58193 -14.39689 -13.92293 -13.55198 -13.27295 -13.17879 -13.15051 -12.67768 -12.48417 -12.34858 -11.98138 -11.83988 -11.62704 -11.58671 -11.44590 -11.00913 -9.98548 -9.52682 -9.47827 -8.87836 -8.75700 -6.48714 0.00612 0.39826 0.82957 0.94830 1.27480 1.41700 1.50265 2.14277 2.38550 2.53221 2.71923 3.24019 3.51561 3.83472 3.91109 4.18372 4.22617 4.35296 4.40534 4.44409 4.55002 4.62903 4.72720 4.73532 4.84808 4.99011 5.00806 5.16074 5.26776 5.36562 5.48842 5.61471 5.69029 5.85049 5.91042 6.02112 6.25653 6.40114 6.46030 6.75706 6.84687 6.85947 8.21186 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.027045 B = 0.005000 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.077977 B = 5598.591162 C = 6129.589698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.146 3.854 4 C -0.236 4.236 5 C 0.143 3.857 6 O -0.502 6.502 7 C -0.181 4.181 8 C -0.062 4.062 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.196 4.196 12 C -0.085 4.085 13 C -0.247 4.247 14 C 0.072 3.928 15 C -0.488 4.488 16 H 0.054 0.946 17 C 0.050 3.950 18 N -0.853 5.853 19 Si 0.964 3.036 20 H -0.258 1.258 21 H -0.277 1.277 22 H -0.255 1.255 23 C -0.203 4.203 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.157 0.843 28 H 0.413 0.587 29 H 0.151 0.849 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.293 0.707 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 9.565 6.074 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.100 3.900 4 C -0.255 4.255 5 C 0.098 3.902 6 O -0.316 6.316 7 C -0.200 4.200 8 C -0.081 4.081 9 C -0.102 4.102 10 C -0.011 4.011 11 C -0.215 4.215 12 C -0.103 4.103 13 C -0.267 4.267 14 C 0.070 3.930 15 C -0.518 4.518 16 H 0.073 0.927 17 C -0.164 4.164 18 N -0.480 5.480 19 Si 0.788 3.212 20 H -0.184 1.184 21 H -0.204 1.204 22 H -0.178 1.178 23 C -0.222 4.222 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.174 0.826 28 H 0.273 0.727 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.845 9.200 6.517 18.641 hybrid contribution 0.394 -0.260 -0.480 0.673 sum -14.451 8.939 6.037 18.033 Atomic orbital electron populations 1.23373 0.76688 1.05444 1.02342 1.86223 1.23189 1.26325 1.88010 1.18885 0.90883 0.84928 0.95282 1.21514 1.01450 0.90984 1.11532 1.18205 0.89277 0.85398 0.97271 1.84726 1.72303 1.39008 1.35555 1.21416 0.93183 0.99217 1.06137 1.21092 1.00503 0.90227 0.96239 1.18493 0.90386 0.93649 1.07651 1.18491 0.94071 0.93178 0.95404 1.20719 1.03219 0.95001 1.02577 1.20897 0.94675 0.97307 0.97454 1.21182 1.03117 0.99430 1.02927 1.17784 0.92519 0.91222 0.91478 1.19418 1.03354 1.28183 1.00829 0.92743 1.26758 0.94838 0.91459 1.03347 1.69729 1.14593 1.26715 1.36946 0.85508 0.76813 0.80398 0.78495 1.18360 1.20357 1.17842 1.21173 1.00886 0.97647 1.02519 0.91336 0.91514 0.86796 0.82556 0.72681 0.83157 0.84830 0.86648 0.85459 0.88504 0.89687 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.32 -9.92 8.83 -91.74 -0.81 -10.73 16 3 C 0.15 4.57 6.59 22.71 0.15 4.72 16 4 C -0.24 -5.82 8.96 22.43 0.20 -5.62 16 5 C 0.14 3.38 6.70 22.54 0.15 3.53 16 6 O -0.50 -9.15 13.49 -92.03 -1.24 -10.39 16 7 C -0.18 -4.58 9.97 22.35 0.22 -4.35 16 8 C -0.06 -1.96 9.49 22.45 0.21 -1.74 16 9 C -0.10 -3.64 5.48 -19.94 -0.11 -3.75 16 10 C -0.01 -0.49 5.26 -20.10 -0.11 -0.59 16 11 C -0.20 -8.18 8.78 22.67 0.20 -7.98 16 12 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 13 C -0.25 -12.16 7.17 22.77 0.16 -12.00 16 14 C 0.07 3.84 5.10 -21.32 -0.11 3.74 16 15 C -0.49 -28.31 9.57 23.46 0.22 -28.09 16 16 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 17 C 0.05 2.75 5.40 85.25 0.46 3.21 16 18 N -0.85 -47.95 13.93 21.82 0.30 -47.64 16 19 Si 0.96 44.03 24.52 68.60 1.68 45.71 16 20 H -0.26 -11.14 6.71 99.48 0.67 -10.47 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.25 -11.92 6.86 99.48 0.68 -11.24 16 23 C -0.20 -9.87 9.24 22.95 0.21 -9.66 16 24 H 0.07 1.05 7.67 -2.39 -0.02 1.04 16 25 H 0.07 1.04 7.65 -2.39 -0.02 1.03 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.16 2.95 6.29 -2.91 -0.02 2.93 16 28 H 0.41 3.29 9.06 -74.06 -0.67 2.62 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.13 4.13 8.04 -2.91 -0.02 4.11 16 31 H 0.12 4.32 7.67 -2.91 -0.02 4.30 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.10 4.73 4.72 -2.91 -0.01 4.72 16 34 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 35 H 0.10 4.70 8.04 -2.91 -0.02 4.68 16 Total: -1.00 -67.96 298.75 3.53 -64.43 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.39 Total: 19.24 kcal Atomic # 6 Polarization: -63.82 SS G_CDS: 3.21 Total: -60.61 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.30 Total: -47.64 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -2.05 Total: -21.12 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.68 Total: 45.71 kcal Total: -67.96 3.53 -64.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243978239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.978 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds