Wall clock time and date at job start Mon Mar 30 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35766 * 116.99765 * 2 1 4 4 C 1.38375 * 120.11564 * 0.02562 * 3 2 1 5 5 C 1.38749 * 120.03945 * 180.02562 * 4 3 2 6 6 O 1.35798 * 119.86707 * 179.97438 * 5 4 3 7 7 C 1.39101 * 120.26475 * 359.97118 * 5 4 3 8 8 C 1.37700 * 120.22311 * 0.25829 * 7 5 4 9 9 C 1.39760 * 119.95380 * 359.51810 * 8 7 5 10 10 C 1.47626 * 120.12805 * 180.24893 * 9 8 7 11 11 C 1.39321 * 120.34810 * 64.95475 * 10 9 8 12 12 C 1.37969 * 119.97118 * 179.72294 * 11 10 9 13 13 C 1.38996 * 120.69514 * 0.55418 * 12 11 10 14 14 C 1.36378 * 120.71448 * 359.72273 * 13 12 11 15 15 C 1.40774 * 119.99389 * 0.02562 * 14 13 12 16 16 C 1.40805 * 120.33895 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00234 * 205.21502 * 16 15 14 18 18 C 1.40023 * 120.00343 * 25.21252 * 16 15 14 19 19 N 1.30814 * 119.99855 * 17.29762 * 18 16 15 20 20 Si 1.86794 * 120.00318 * 197.29708 * 18 16 15 21 21 H 1.48500 * 109.47224 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47350 * 119.99986 * 20 18 16 23 23 H 1.48503 * 109.47169 * 239.99923 * 20 18 16 24 24 H 1.08996 * 109.47404 * 60.00264 * 1 2 3 25 25 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47268 * 299.99695 * 1 2 3 27 27 H 1.08000 * 119.97577 * 359.97438 * 4 3 2 28 28 H 0.96702 * 114.00064 * 270.01687 * 6 5 4 29 29 H 1.08001 * 119.89188 * 179.97438 * 7 5 4 30 30 H 1.07991 * 120.02182 * 179.73838 * 8 7 5 31 31 H 1.08004 * 120.01883 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.65298 * 180.27632 * 12 11 10 33 33 H 1.07993 * 119.64455 * 179.73942 * 13 12 11 34 34 H 1.07999 * 120.00561 * 179.97438 * 14 13 12 35 35 H 0.96996 * 120.00120 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2940 2.3717 0.0005 5 6 1.9255 3.6072 0.0000 6 8 1.1847 4.7453 0.0000 7 6 3.3143 3.6846 -0.0005 8 6 4.0726 2.5352 -0.0058 9 6 3.4462 1.2859 -0.0005 10 6 4.2554 0.0512 -0.0006 11 6 5.0710 -0.2560 1.0863 12 6 5.8197 -1.4149 1.0805 13 6 5.7798 -2.2799 -0.0068 14 6 4.9956 -2.0041 -1.0879 15 6 4.2156 -0.8324 -1.1110 16 6 3.4030 -0.5408 -2.2233 17 1 3.1358 0.4823 -2.4435 18 6 2.9412 -1.5770 -3.0440 19 7 2.9657 -2.8123 -2.6140 20 14 2.2901 -1.1957 -4.7527 21 1 2.3684 0.2669 -4.9973 22 1 3.1072 -1.9117 -5.7650 23 1 0.8764 -1.6391 -4.8542 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2154 2.3169 0.0005 28 1 0.9696 5.0746 -0.8834 29 1 3.7996 4.6494 -0.0013 30 1 5.1506 2.5991 -0.0104 31 1 5.1141 0.4107 1.9349 32 1 6.4467 -1.6502 1.9277 33 1 6.3760 -3.1803 0.0048 34 1 4.9736 -2.6840 -1.9267 35 1 2.6462 -3.5302 -3.1827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243983993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:25 Heat of formation + Delta-G solvation = -36.733442 kcal Electronic energy + Delta-G solvation = -20415.276057 eV Core-core repulsion = 17343.425181 eV Total energy + Delta-G solvation = -3071.850877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.73708 -37.81064 -37.38800 -35.44145 -33.64424 -31.08087 -29.76601 -29.40431 -27.80995 -26.50428 -25.11554 -22.35271 -21.66116 -20.73496 -19.79173 -18.39503 -17.25136 -16.41572 -15.84488 -15.54521 -15.17425 -14.96428 -14.43675 -14.18828 -13.53309 -13.46283 -13.33328 -12.72348 -12.56736 -11.98606 -11.69065 -11.65395 -11.49994 -11.16085 -11.06885 -10.81304 -10.59263 -10.41472 -10.33849 -10.26403 -9.61697 -9.38625 -9.16313 -8.24741 -7.62099 -7.35547 -7.09430 -6.73359 -4.30303 1.71411 1.99912 2.76968 3.02377 3.05200 3.10032 3.25409 3.91324 3.95394 4.19558 4.61139 4.65929 5.33575 5.46346 5.54190 5.59730 5.67742 5.79633 5.92391 6.03557 6.17447 6.27099 6.32542 6.50011 6.61731 6.83305 6.95944 7.01222 7.08463 7.22293 7.29646 7.41632 7.62410 7.88479 7.93328 8.03628 8.14129 8.21171 8.31304 8.64462 8.90065 9.01066 10.17230 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.008874 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.802219 B = 3154.412965 C = 4200.968705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.273 6.273 3 C 0.161 3.839 4 C -0.244 4.244 5 C 0.112 3.888 6 O -0.504 6.504 7 C -0.185 4.185 8 C -0.076 4.076 9 C -0.015 4.015 10 C -0.179 4.179 11 C -0.071 4.071 12 C -0.247 4.247 13 C -0.102 4.102 14 C -0.161 4.161 15 C 0.138 3.862 16 C -0.435 4.435 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.785 5.785 20 Si 0.898 3.102 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.275 1.275 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.125 0.875 28 H 0.382 0.618 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 6.638 0.690 7.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.184 6.184 3 C 0.114 3.886 4 C -0.264 4.264 5 C 0.068 3.932 6 O -0.313 6.313 7 C -0.204 4.204 8 C -0.094 4.094 9 C -0.016 4.016 10 C -0.180 4.180 11 C -0.089 4.089 12 C -0.266 4.266 13 C -0.121 4.121 14 C -0.180 4.180 15 C 0.135 3.865 16 C -0.464 4.464 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.410 5.410 20 Si 0.723 3.277 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.200 1.200 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.142 0.858 28 H 0.237 0.763 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.573 6.126 1.228 7.197 hybrid contribution -0.776 0.251 -1.297 1.532 sum -4.348 6.377 -0.069 7.719 Atomic orbital electron populations 1.22962 0.80393 1.03346 1.00089 1.86394 1.19247 1.25532 1.87205 1.19060 0.91790 0.83722 0.94031 1.21273 0.99975 0.92020 1.13100 1.18099 0.89196 0.84570 1.01295 1.84758 1.73022 1.40462 1.33082 1.21060 0.92751 0.98698 1.07887 1.21008 0.99551 0.90385 0.98496 1.18235 0.89229 0.93694 1.00404 1.18321 1.05227 0.97813 0.96662 1.20522 0.96206 0.96161 0.96061 1.20205 1.07949 0.98546 0.99937 1.20442 0.99102 0.97605 0.94916 1.21020 0.98404 0.99942 0.98673 1.17457 0.89160 0.89767 0.90129 1.19391 1.25539 0.94124 1.07317 0.90727 1.25881 0.94179 0.94518 0.99323 1.69842 1.34517 1.00634 1.35978 0.86411 0.78842 0.80133 0.82313 1.18401 1.19645 1.20044 0.93381 0.88764 0.93688 0.85750 0.76286 0.86283 0.85481 0.89466 0.89634 0.89713 0.86525 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.27 -5.93 9.05 -19.01 -0.17 -6.10 16 3 C 0.16 3.37 5.97 -38.76 -0.23 3.14 16 4 C -0.24 -4.41 8.96 -39.34 -0.35 -4.76 16 5 C 0.11 1.91 6.71 -39.07 -0.26 1.65 16 6 O -0.50 -7.24 13.49 -19.11 -0.26 -7.50 16 7 C -0.19 -3.13 9.96 -39.46 -0.39 -3.52 16 8 C -0.08 -1.44 9.73 -39.21 -0.38 -1.82 16 9 C -0.01 -0.33 4.39 -104.73 -0.46 -0.79 16 10 C -0.18 -4.33 4.98 -104.24 -0.52 -4.85 16 11 C -0.07 -1.64 9.73 -39.28 -0.38 -2.02 16 12 C -0.25 -5.62 10.03 -39.40 -0.40 -6.02 16 13 C -0.10 -2.42 9.96 -39.97 -0.40 -2.82 16 14 C -0.16 -4.17 8.63 -39.29 -0.34 -4.50 16 15 C 0.14 3.60 5.41 -106.54 -0.58 3.02 16 16 C -0.43 -11.22 7.36 -37.94 -0.28 -11.50 16 17 H 0.07 1.94 7.10 -52.48 -0.37 1.56 16 18 C 0.08 1.95 5.14 -17.32 -0.09 1.86 16 19 N -0.78 -19.81 10.97 55.55 0.61 -19.20 16 20 Si 0.90 18.45 29.59 -169.99 -5.03 13.42 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H 0.05 0.71 7.66 -51.93 -0.40 0.32 16 25 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.12 1.97 6.29 -52.49 -0.33 1.64 16 28 H 0.38 3.62 9.06 45.56 0.41 4.03 16 29 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 31 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.12 3.08 6.19 -52.49 -0.32 2.76 16 35 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -29.32 301.90 -7.45 -36.77 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.08 Total: 9.55 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -4.07 Total: -31.49 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.43 Total: -13.60 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.32 -7.45 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243983993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.036 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds