Wall clock time and date at job start Mon Mar 30 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38400 * 119.87943 * 2 1 4 4 C 1.38196 * 120.31207 * 179.97438 * 3 2 1 5 5 C 1.38563 * 120.07135 * 359.79741 * 4 3 2 6 6 O 1.35853 * 120.12230 * 180.23270 * 5 4 3 7 7 C 1.39850 * 119.75476 * 0.46003 * 5 4 3 8 8 C 1.48234 * 120.15452 * 179.79768 * 7 5 4 9 9 C 1.39311 * 120.15727 * 244.72290 * 8 7 5 10 10 C 1.38011 * 119.94227 * 179.72342 * 9 8 7 11 11 C 1.38447 * 120.27033 * 0.27634 * 10 9 8 12 12 C 1.38120 * 120.33028 * 359.97253 * 11 10 9 13 13 C 1.38746 * 120.04935 * 0.02562 * 12 11 10 14 14 O 1.35676 * 120.13462 * 180.02562 * 13 12 11 15 15 C 1.34811 * 116.99763 * 354.40493 * 14 13 12 16 16 H 1.08002 * 120.00500 * 5.06119 * 15 14 13 17 17 C 1.38649 * 119.99403 * 185.06254 * 15 14 13 18 18 N 1.31560 * 120.00366 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99715 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47429 * 119.99726 * 19 17 15 22 22 H 1.48507 * 109.46872 * 239.99930 * 19 17 15 23 23 C 1.38002 * 119.88099 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47365 * 269.97480 * 1 2 3 25 25 H 1.09005 * 109.47537 * 29.97332 * 1 2 3 26 26 H 1.09005 * 109.47233 * 149.97356 * 1 2 3 27 27 H 1.07992 * 119.84074 * 0.03258 * 3 2 1 28 28 H 1.07998 * 119.96735 * 180.02562 * 4 3 2 29 29 H 0.96705 * 113.99649 * 270.22395 * 6 5 4 30 30 H 1.08001 * 120.03288 * 0.02562 * 9 8 7 31 31 H 1.07999 * 119.86959 * 180.25453 * 10 9 8 32 32 H 1.07999 * 119.83762 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.97647 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00007 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.03243 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1964 1.2000 0.0000 4 6 3.5783 1.2105 0.0005 5 6 4.2817 0.0166 0.0053 6 8 5.6402 0.0257 0.0106 7 6 3.5879 -1.1977 -0.0002 8 6 4.3315 -2.4800 0.0004 9 6 4.2422 -3.3412 -1.0910 10 6 4.9409 -4.5314 -1.0883 11 6 5.7267 -4.8769 -0.0021 12 6 5.8193 -4.0339 1.0881 13 6 5.1226 -2.8340 1.0996 14 8 5.2127 -2.0043 2.1693 15 6 5.9018 -2.4548 3.2369 16 1 6.4202 -3.4008 3.1851 17 6 5.9447 -1.7036 4.4014 18 7 5.3136 -0.5510 4.4645 19 14 6.9001 -2.3274 5.8805 20 1 7.5160 -3.6389 5.5547 21 1 7.9649 -1.3529 6.2290 22 1 5.9782 -2.4868 7.0339 23 6 2.1945 -1.1966 -0.0005 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5143 27 1 1.6519 2.1326 0.0005 28 1 4.1107 2.1501 0.0009 29 1 6.0369 0.0303 -0.8713 30 1 3.6307 -3.0755 -1.9407 31 1 4.8741 -5.1963 -1.9368 32 1 6.2702 -5.8102 -0.0072 33 1 6.4343 -4.3088 1.9322 34 1 5.3433 -0.0257 5.2794 35 1 1.6530 -2.1311 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244404103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:02 Heat of formation + Delta-G solvation = -22.671660 kcal Electronic energy + Delta-G solvation = -20168.930119 eV Core-core repulsion = 17097.689007 eV Total energy + Delta-G solvation = -3071.241112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62999 -38.42277 -36.30877 -36.22874 -32.38437 -32.04951 -31.13088 -29.10879 -28.20687 -25.82345 -25.29028 -22.95779 -21.52986 -21.23830 -20.00564 -17.89673 -17.76939 -16.81790 -15.40518 -15.28327 -14.94362 -14.55401 -14.34402 -13.92578 -13.57572 -13.41328 -13.33509 -13.09276 -12.74906 -12.47913 -12.26183 -11.66402 -11.48343 -11.33663 -11.24544 -11.03682 -10.85848 -10.68501 -10.64788 -10.39646 -9.84104 -9.26409 -8.80285 -8.47971 -8.06012 -7.73220 -7.10377 -6.38596 -3.96280 1.67602 1.83946 2.25890 2.43822 3.15158 3.15942 3.21428 3.99990 4.12938 4.58569 4.83200 5.13939 5.20629 5.25553 5.31400 5.39227 5.63410 5.68154 5.72796 5.82895 5.87120 6.02920 6.06345 6.12432 6.30128 6.46024 6.50572 6.69282 6.73446 6.86108 7.03253 7.04341 7.15828 7.20761 7.38600 7.40350 7.46877 7.84314 8.03827 8.36404 9.05526 9.78247 10.78088 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.007646 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.540027 B = 3661.029541 C = 4804.520199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.115 4.115 4 C -0.144 4.144 5 C 0.130 3.870 6 O -0.476 6.476 7 C -0.029 4.029 8 C -0.136 4.136 9 C -0.061 4.061 10 C -0.222 4.222 11 C -0.069 4.069 12 C -0.239 4.239 13 C 0.177 3.823 14 O -0.152 6.152 15 C -0.393 4.393 16 H 0.091 0.909 17 C 0.042 3.958 18 N -0.851 5.851 19 Si 0.938 3.062 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.098 4.098 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.374 0.626 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.268 0.732 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -0.291 -9.620 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.133 4.133 4 C -0.162 4.162 5 C 0.086 3.914 6 O -0.283 6.283 7 C -0.030 4.030 8 C -0.138 4.138 9 C -0.079 4.079 10 C -0.241 4.241 11 C -0.087 4.087 12 C -0.258 4.258 13 C 0.121 3.879 14 O -0.053 6.053 15 C -0.470 4.470 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.485 5.485 19 Si 0.763 3.237 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.116 4.116 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.228 0.772 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.078 0.922 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.754 0.144 -8.757 9.966 hybrid contribution 0.735 -0.385 0.415 0.927 sum -4.020 -0.240 -8.342 9.263 Atomic orbital electron populations 1.20709 0.91612 1.02024 1.02042 1.19709 0.95681 0.93078 1.02062 1.20739 0.93483 0.97144 1.01927 1.21247 0.94407 0.97551 1.03040 1.18471 0.83121 0.91251 0.98601 1.85022 1.15565 1.96286 1.31472 1.18938 0.92635 0.92165 0.99216 1.17661 1.04615 0.95901 0.95585 1.20660 0.97966 0.93387 0.95924 1.20460 1.04985 0.98801 0.99808 1.20791 0.96937 0.97818 0.93146 1.21118 1.06883 0.96853 1.00955 1.19285 0.91374 0.88828 0.88424 1.84031 1.63629 1.37556 1.20114 1.21386 1.29541 1.06543 0.89480 0.89190 1.25267 0.97444 0.95515 0.98112 1.70086 1.39356 1.11334 1.27750 0.85699 0.78932 0.78823 0.80268 1.19123 1.20162 1.20204 1.20948 0.92717 0.97319 1.00593 0.91492 0.92045 0.91939 0.86483 0.86011 0.77165 0.87173 0.87648 0.87606 0.85521 0.92210 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.00 36.00 0.36 -0.97 16 2 C -0.11 -1.72 5.88 -104.65 -0.61 -2.34 16 3 C -0.11 -1.87 9.68 -39.54 -0.38 -2.25 16 4 C -0.14 -2.61 9.98 -39.48 -0.39 -3.01 16 5 C 0.13 2.70 6.40 -38.86 -0.25 2.45 16 6 O -0.48 -9.97 12.50 -19.28 -0.24 -10.21 16 7 C -0.03 -0.60 4.95 -104.77 -0.52 -1.12 16 8 C -0.14 -2.95 4.95 -104.74 -0.52 -3.47 16 9 C -0.06 -1.12 9.73 -39.27 -0.38 -1.51 16 10 C -0.22 -3.89 10.03 -39.59 -0.40 -4.29 16 11 C -0.07 -1.29 10.03 -39.55 -0.40 -1.68 16 12 C -0.24 -5.34 9.16 -39.44 -0.36 -5.70 16 13 C 0.18 4.38 6.34 -38.74 -0.25 4.14 16 14 O -0.15 -4.41 8.75 0.33 0.00 -4.41 16 15 C -0.39 -11.25 9.49 30.88 0.29 -10.96 16 16 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 17 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 18 N -0.85 -25.59 13.67 55.48 0.76 -24.84 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.10 -1.80 9.38 -39.26 -0.37 -2.17 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 26 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.37 5.66 9.06 45.56 0.41 6.07 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -33.42 308.18 -7.22 -40.64 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.09 Total: 9.96 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -4.27 Total: -31.79 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.76 Total: -24.84 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.24 Total: -14.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.42 -7.22 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244404103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.973 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds