Wall clock time and date at job start Mon Mar 30 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38400 * 119.87943 * 2 1 4 4 C 1.38196 * 120.31207 * 179.97438 * 3 2 1 5 5 C 1.38563 * 120.07135 * 359.79741 * 4 3 2 6 6 O 1.35853 * 120.12230 * 180.23270 * 5 4 3 7 7 C 1.39850 * 119.75476 * 0.46003 * 5 4 3 8 8 C 1.48234 * 120.15452 * 179.79768 * 7 5 4 9 9 C 1.39311 * 120.15727 * 244.72290 * 8 7 5 10 10 C 1.38011 * 119.94227 * 179.72342 * 9 8 7 11 11 C 1.38447 * 120.27033 * 0.27634 * 10 9 8 12 12 C 1.38120 * 120.33028 * 359.97253 * 11 10 9 13 13 C 1.38746 * 120.04935 * 0.02562 * 12 11 10 14 14 O 1.35676 * 120.13462 * 180.02562 * 13 12 11 15 15 C 1.34811 * 116.99763 * 354.40493 * 14 13 12 16 16 H 1.08002 * 120.00500 * 5.06119 * 15 14 13 17 17 C 1.38649 * 119.99403 * 185.06254 * 15 14 13 18 18 N 1.31560 * 120.00366 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99715 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47429 * 119.99726 * 19 17 15 22 22 H 1.48507 * 109.46872 * 239.99930 * 19 17 15 23 23 C 1.38002 * 119.88099 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47365 * 269.97480 * 1 2 3 25 25 H 1.09005 * 109.47537 * 29.97332 * 1 2 3 26 26 H 1.09005 * 109.47233 * 149.97356 * 1 2 3 27 27 H 1.07992 * 119.84074 * 0.03258 * 3 2 1 28 28 H 1.07998 * 119.96735 * 180.02562 * 4 3 2 29 29 H 0.96705 * 113.99649 * 270.22395 * 6 5 4 30 30 H 1.08001 * 120.03288 * 0.02562 * 9 8 7 31 31 H 1.07999 * 119.86959 * 180.25453 * 10 9 8 32 32 H 1.07999 * 119.83762 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.97647 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00007 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.03243 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1964 1.2000 0.0000 4 6 3.5783 1.2105 0.0005 5 6 4.2817 0.0166 0.0053 6 8 5.6402 0.0257 0.0106 7 6 3.5879 -1.1977 -0.0002 8 6 4.3315 -2.4800 0.0004 9 6 4.2422 -3.3412 -1.0910 10 6 4.9409 -4.5314 -1.0883 11 6 5.7267 -4.8769 -0.0021 12 6 5.8193 -4.0339 1.0881 13 6 5.1226 -2.8340 1.0996 14 8 5.2127 -2.0043 2.1693 15 6 5.9018 -2.4548 3.2369 16 1 6.4202 -3.4008 3.1851 17 6 5.9447 -1.7036 4.4014 18 7 5.3136 -0.5510 4.4645 19 14 6.9001 -2.3274 5.8805 20 1 7.5160 -3.6389 5.5547 21 1 7.9649 -1.3529 6.2290 22 1 5.9782 -2.4868 7.0339 23 6 2.1945 -1.1966 -0.0005 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3634 -0.8898 -0.5143 27 1 1.6519 2.1326 0.0005 28 1 4.1107 2.1501 0.0009 29 1 6.0369 0.0303 -0.8713 30 1 3.6307 -3.0755 -1.9407 31 1 4.8741 -5.1963 -1.9368 32 1 6.2702 -5.8102 -0.0072 33 1 6.4343 -4.3088 1.9322 34 1 5.3433 -0.0257 5.2794 35 1 1.6530 -2.1311 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244404103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:02 Heat of formation + Delta-G solvation = -44.429332 kcal Electronic energy + Delta-G solvation = -20169.873603 eV Core-core repulsion = 17097.689007 eV Total energy + Delta-G solvation = -3072.184596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18420 -40.03889 -38.00322 -37.73597 -34.29020 -33.63251 -32.43502 -30.71873 -29.76469 -27.30430 -27.06071 -24.44081 -23.13775 -22.77360 -21.49833 -19.76583 -19.31606 -18.57756 -16.88248 -16.80123 -16.47009 -16.27653 -16.04259 -15.42446 -15.28360 -15.07120 -14.63913 -14.39347 -14.30682 -14.10058 -13.53926 -13.40509 -13.07056 -12.75290 -12.61674 -12.50456 -12.36555 -12.26645 -12.15862 -12.09676 -11.41635 -11.03116 -10.79645 -9.96277 -9.53808 -9.19517 -8.81782 -8.43137 -6.09399 0.21198 0.43720 0.69874 0.82731 1.31941 1.41133 1.49987 2.17117 2.72836 2.87301 3.20537 3.43050 3.55903 3.83551 4.03654 4.06588 4.22844 4.28586 4.44791 4.52999 4.58992 4.71178 4.79785 4.88284 4.94287 5.09128 5.13514 5.14744 5.23192 5.26246 5.44391 5.58707 5.65224 5.72396 5.75573 5.79090 6.03061 6.07821 6.26089 6.99000 7.00464 7.86760 8.79102 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.007646 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.540027 B = 3661.029541 C = 4804.520199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.156 4.156 5 C 0.101 3.899 6 O -0.503 6.503 7 C -0.061 4.061 8 C -0.139 4.139 9 C -0.061 4.061 10 C -0.194 4.194 11 C -0.068 4.068 12 C -0.257 4.257 13 C 0.135 3.865 14 O -0.203 6.203 15 C -0.415 4.415 16 H 0.097 0.903 17 C -0.021 4.021 18 N -0.912 5.912 19 Si 1.014 2.986 20 H -0.252 1.252 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.134 0.866 29 H 0.391 0.609 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.269 0.731 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -1.690 -11.460 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.175 4.175 5 C 0.056 3.944 6 O -0.313 6.313 7 C -0.061 4.061 8 C -0.141 4.141 9 C -0.079 4.079 10 C -0.213 4.213 11 C -0.086 4.086 12 C -0.276 4.276 13 C 0.084 3.916 14 O -0.108 6.108 15 C -0.491 4.491 16 H 0.114 0.886 17 C -0.219 4.219 18 N -0.549 5.549 19 Si 0.834 3.166 20 H -0.176 1.176 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.171 0.829 28 H 0.152 0.848 29 H 0.247 0.753 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.906 -1.298 -10.665 12.261 hybrid contribution 0.991 -0.069 0.625 1.174 sum -4.915 -1.367 -10.041 11.262 Atomic orbital electron populations 1.20785 0.88386 1.04142 1.02776 1.20202 0.97991 0.92221 0.99971 1.21197 0.92825 0.98811 1.00148 1.21522 0.95609 0.97272 1.03076 1.18807 0.82952 0.92371 1.00225 1.84972 1.16539 1.96439 1.33385 1.19160 0.93837 0.91990 1.01135 1.18082 1.03733 0.96840 0.95402 1.21112 0.98009 0.93065 0.95679 1.21063 1.01771 0.98327 1.00111 1.21205 0.96985 0.98412 0.92037 1.21262 1.07014 0.97099 1.02221 1.19914 0.93195 0.89881 0.88649 1.84011 1.65893 1.39555 1.21357 1.21843 1.29923 1.07020 0.90316 0.88619 1.26507 0.98565 0.95611 1.01170 1.70242 1.42505 1.13370 1.28825 0.84598 0.77437 0.78752 0.75829 1.17555 1.19488 1.19340 1.21187 0.91953 0.98841 1.00863 0.91245 0.89438 0.90445 0.82911 0.84789 0.75255 0.83863 0.82994 0.83899 0.86751 0.92210 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 10.00 71.23 0.71 -1.55 16 2 C -0.10 -3.23 5.88 -19.88 -0.12 -3.34 16 3 C -0.11 -3.49 9.68 22.30 0.22 -3.27 16 4 C -0.16 -5.74 9.98 22.34 0.22 -5.52 16 5 C 0.10 4.34 6.40 22.74 0.15 4.48 16 6 O -0.50 -22.43 12.50 -91.90 -1.15 -23.58 16 7 C -0.06 -2.59 4.95 -19.96 -0.10 -2.69 16 8 C -0.14 -6.10 4.95 -19.94 -0.10 -6.20 16 9 C -0.06 -2.08 9.73 22.47 0.22 -1.86 16 10 C -0.19 -6.02 10.03 22.27 0.22 -5.80 16 11 C -0.07 -2.39 10.03 22.29 0.22 -2.17 16 12 C -0.26 -11.64 9.16 22.36 0.20 -11.44 16 13 C 0.14 6.99 6.34 22.81 0.14 7.13 16 14 O -0.20 -12.58 8.75 -21.74 -0.19 -12.77 16 15 C -0.41 -25.12 9.49 67.92 0.64 -24.48 16 16 H 0.10 5.38 5.21 -2.91 -0.02 5.37 16 17 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 18 N -0.91 -58.09 13.67 21.61 0.30 -57.79 16 19 Si 1.01 44.76 29.55 68.60 2.03 46.79 16 20 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 C -0.11 -4.03 9.38 22.48 0.21 -3.82 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 1.46 8.08 -2.38 -0.02 1.44 16 26 H 0.08 1.46 8.08 -2.38 -0.02 1.44 16 27 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.39 12.72 9.06 -74.05 -0.67 12.05 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.11 5.33 5.64 -2.91 -0.02 5.32 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -78.88 308.18 4.75 -74.12 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.45 Total: 34.51 kcal Atomic # 6 Polarization: -64.59 SS G_CDS: 3.32 Total: -61.27 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.30 Total: -57.79 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.34 Total: -36.35 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.88 4.75 -74.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244404103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.695 kcal (2) G-P(sol) polarization free energy of solvation -78.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds