Wall clock time and date at job start Mon Mar 30 2020 01:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38535 * 120.09018 * 2 1 4 4 O 1.35902 * 119.99197 * 0.02562 * 3 2 1 5 5 C 1.38799 * 120.01419 * 180.02562 * 3 2 1 6 6 C 1.38263 * 120.19895 * 359.68111 * 5 3 2 7 7 C 1.38016 * 120.18471 * 0.59768 * 6 5 3 8 8 C 1.39282 * 120.09634 * 180.02562 * 2 1 3 9 9 C 1.48294 * 120.09837 * 359.95264 * 8 2 1 10 10 C 1.39285 * 120.16051 * 244.75209 * 9 8 2 11 11 C 1.38021 * 119.94500 * 179.74399 * 10 9 8 12 12 C 1.38445 * 120.26664 * 0.52831 * 11 10 9 13 13 C 1.38109 * 120.32646 * 359.74645 * 12 11 10 14 14 C 1.38761 * 120.05065 * 359.97438 * 13 12 11 15 15 O 1.35661 * 120.13719 * 179.97438 * 14 13 12 16 16 C 1.34813 * 116.99922 * 354.40381 * 15 14 13 17 17 H 1.08002 * 120.00098 * 5.05590 * 16 15 14 18 18 C 1.38654 * 119.99725 * 185.06091 * 16 15 14 19 19 N 1.31553 * 120.00315 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99796 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47323 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47157 * 119.99694 * 20 18 16 23 23 H 1.48503 * 109.47245 * 240.00190 * 20 18 16 24 24 H 1.08997 * 109.47168 * 269.98083 * 1 2 3 25 25 H 1.09001 * 109.47063 * 29.98103 * 1 2 3 26 26 H 1.09000 * 109.46961 * 149.97937 * 1 2 3 27 27 H 0.96700 * 114.00050 * 90.00423 * 4 3 2 28 28 H 1.07997 * 119.90140 * 179.97438 * 5 3 2 29 29 H 1.07998 * 119.91537 * 180.30254 * 6 5 3 30 30 H 1.07994 * 120.01082 * 179.70626 * 7 6 5 31 31 H 1.08003 * 120.03093 * 359.97438 * 10 9 8 32 32 H 1.07999 * 119.86528 * 180.27443 * 11 10 9 33 33 H 1.07998 * 119.83231 * 179.76357 * 12 11 10 34 34 H 1.07997 * 119.97478 * 179.97438 * 13 12 11 35 35 H 0.96996 * 120.00211 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1987 0.0000 4 8 1.5237 2.3766 0.0005 5 6 3.5895 1.1968 -0.0005 6 6 4.2834 0.0009 0.0056 7 6 3.5998 -1.1980 -0.0002 8 6 2.2054 -1.2050 -0.0005 9 6 1.4683 -2.4918 -0.0001 10 6 1.5670 -3.3544 1.0891 11 6 0.8748 -4.5485 1.0871 12 6 0.0903 -4.8986 0.0014 13 6 -0.0110 -4.0543 -1.0868 14 6 0.6746 -2.8479 -1.0965 15 8 0.5767 -2.0175 -2.1648 16 6 -0.1083 -2.4725 -3.2330 17 1 -0.6179 -3.4234 -3.1827 18 6 -0.1584 -1.7198 -4.3964 19 7 0.4620 -0.5614 -4.4576 20 14 -1.1069 -2.3507 -5.8768 21 1 -1.7098 -3.6689 -5.5535 22 1 -2.1814 -1.3863 -6.2240 23 1 -0.1832 -2.4990 -7.0301 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.3279 2.7173 0.8841 28 1 4.1291 2.1323 -0.0010 29 1 5.3634 0.0049 0.0101 30 1 4.1446 -2.1305 -0.0002 31 1 2.1816 -3.0874 1.9361 32 1 0.9487 -5.2144 1.9342 33 1 -0.4452 -5.8364 0.0057 34 1 -0.6242 -4.3332 -1.9309 35 1 0.4272 -0.0350 -5.2716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244960264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:14 Heat of formation + Delta-G solvation = -22.731777 kcal Electronic energy + Delta-G solvation = -20326.220774 eV Core-core repulsion = 17254.977055 eV Total energy + Delta-G solvation = -3071.243719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76737 -38.65492 -36.55558 -35.95404 -32.65160 -32.17958 -30.73302 -29.04139 -28.07609 -26.19211 -25.31932 -22.86664 -21.45511 -21.11186 -20.22349 -17.96912 -17.84646 -16.75102 -15.58769 -15.43157 -14.94289 -14.64389 -14.54981 -14.17831 -13.71014 -13.57040 -13.11810 -12.74487 -12.54315 -12.42740 -11.77785 -11.71537 -11.54199 -11.33585 -11.25455 -10.99638 -10.83723 -10.74220 -10.62168 -10.43273 -9.95174 -9.34299 -8.85237 -8.43864 -7.98400 -7.86254 -7.18171 -6.44090 -4.03872 1.65888 1.83643 2.21928 2.35583 3.11803 3.13316 3.18577 3.95006 4.12206 4.49358 4.66874 5.06055 5.20110 5.31131 5.40961 5.51703 5.63249 5.69632 5.80120 5.94277 6.03789 6.22314 6.23525 6.30869 6.41334 6.46715 6.65746 6.73651 6.85829 6.95453 6.99480 7.05631 7.13039 7.24485 7.33019 7.34522 7.44658 7.77944 7.97842 8.09505 8.99662 9.68279 10.71907 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.013964 B = 0.008315 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.728723 B = 3366.530012 C = 4708.042643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C 0.099 3.901 4 O -0.494 6.494 5 C -0.152 4.152 6 C -0.117 4.117 7 C -0.117 4.117 8 C 0.004 3.996 9 C -0.135 4.135 10 C -0.060 4.060 11 C -0.217 4.217 12 C -0.070 4.070 13 C -0.236 4.236 14 C 0.165 3.835 15 O -0.159 6.159 16 C -0.398 4.398 17 H 0.092 0.908 18 C 0.043 3.957 19 N -0.850 5.850 20 Si 0.937 3.063 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.379 0.621 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -0.551 9.651 9.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C 0.055 3.945 4 O -0.302 6.302 5 C -0.171 4.171 6 C -0.136 4.136 7 C -0.135 4.135 8 C 0.004 3.996 9 C -0.136 4.136 10 C -0.078 4.078 11 C -0.236 4.236 12 C -0.088 4.088 13 C -0.255 4.255 14 C 0.110 3.890 15 O -0.062 6.062 16 C -0.474 4.474 17 H 0.109 0.891 18 C -0.162 4.162 19 N -0.483 5.483 20 Si 0.762 3.238 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.233 0.767 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.639 -0.171 8.790 9.180 hybrid contribution -0.480 -0.318 -0.413 0.709 sum 2.159 -0.488 8.377 8.665 Atomic orbital electron populations 1.20712 0.90801 1.04612 1.00555 1.20235 0.96797 0.91492 0.98885 1.18162 0.89635 0.84605 1.02137 1.84865 1.76780 1.36128 1.32449 1.21235 0.93358 0.98399 1.04077 1.20765 0.99215 0.91980 1.01599 1.21169 0.93340 0.97812 1.01174 1.18375 0.92249 0.91526 0.97435 1.17775 1.04223 0.95980 0.95628 1.20669 0.97919 0.93242 0.95961 1.20504 1.04670 0.98600 0.99783 1.20806 0.96959 0.97898 0.93135 1.21125 1.06854 0.96590 1.00977 1.19282 0.91972 0.89234 0.88506 1.84034 1.64448 1.37411 1.20269 1.21380 1.30160 1.06297 0.89540 0.89054 1.25271 0.97375 0.95515 0.98073 1.70072 1.39260 1.10981 1.28004 0.85705 0.78924 0.78848 0.80300 1.19107 1.20133 1.20165 0.92704 0.91405 0.89740 0.76737 0.86267 0.86287 0.86251 0.86994 0.87521 0.87498 0.85386 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.22 36.00 0.33 -1.92 16 2 C -0.07 -1.52 5.70 -104.13 -0.59 -2.11 16 3 C 0.10 1.86 6.67 -39.26 -0.26 1.60 16 4 O -0.49 -8.35 12.54 -19.43 -0.24 -8.59 16 5 C -0.15 -2.58 9.98 -39.36 -0.39 -2.97 16 6 C -0.12 -1.93 10.03 -39.65 -0.40 -2.32 16 7 C -0.12 -2.14 9.73 -39.21 -0.38 -2.52 16 8 C 0.00 0.09 4.94 -104.92 -0.52 -0.43 16 9 C -0.13 -2.84 4.63 -104.72 -0.49 -3.32 16 10 C -0.06 -1.07 9.73 -39.27 -0.38 -1.46 16 11 C -0.22 -3.69 10.03 -39.58 -0.40 -4.09 16 12 C -0.07 -1.26 10.03 -39.55 -0.40 -1.66 16 13 C -0.24 -5.06 9.16 -39.44 -0.36 -5.42 16 14 C 0.16 3.91 5.24 -38.74 -0.20 3.71 16 15 O -0.16 -4.40 7.70 0.37 0.00 -4.40 16 16 C -0.40 -10.92 9.49 30.89 0.29 -10.63 16 17 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.85 -24.93 13.67 55.48 0.76 -24.17 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.41 7.53 -51.93 -0.39 1.02 16 26 H 0.08 1.96 4.67 -51.93 -0.24 1.72 16 27 H 0.38 4.18 9.06 45.56 0.41 4.60 16 28 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -31.88 301.78 -7.09 -38.97 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.88 Total: 10.61 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -4.24 Total: -32.46 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.24 Total: -12.99 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.88 -7.09 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244960264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.234 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds