Wall clock time and date at job start Mon Mar 30 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99546 * 2 1 4 4 H 1.48503 * 109.47337 * 240.00257 * 3 2 1 5 5 H 1.48505 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47432 * 119.99990 * 3 2 1 7 7 C 1.37875 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46930 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99963 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99861 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.40105 * 119.99633 * 0.02562 * 13 11 10 15 15 C 1.34777 * 119.99775 * 179.72021 * 14 13 11 16 16 O 1.21283 * 120.00222 * 0.28016 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27576 * 15 14 13 18 18 H 1.09007 * 110.21015 * 41.92786 * 17 15 14 19 19 C 1.54480 * 110.24345 * 280.00602 * 17 15 14 20 20 C 1.54630 * 101.76203 * 215.58068 * 19 17 15 21 21 C 1.51283 * 104.19487 * 24.79311 * 20 19 17 22 22 O 1.21281 * 124.93993 * 163.74610 * 21 20 19 23 23 N 1.34412 * 110.12057 * 343.75164 * 21 20 19 24 24 H 0.96990 * 120.00606 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47130 * 60.00861 * 9 7 2 26 26 H 1.08997 * 109.47587 * 300.00397 * 9 7 2 27 27 H 0.97000 * 119.99500 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00523 * 179.97438 * 13 11 10 29 29 H 0.97001 * 120.00437 * 0.02562 * 14 13 11 30 30 H 1.08993 * 110.97070 * 333.69625 * 19 17 15 31 31 H 1.08998 * 110.97000 * 97.46369 * 19 17 15 32 32 H 1.08998 * 110.48861 * 143.47458 * 20 19 17 33 33 H 1.09003 * 110.48909 * 265.98758 * 20 19 17 34 34 H 0.96992 * 124.35287 * 179.56753 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5588 -5.1055 -0.0020 13 7 2.6300 -5.9076 -0.0016 14 7 4.0074 -5.6515 -0.0010 15 6 4.8833 -6.6758 0.0041 16 8 4.4791 -7.8193 0.0032 17 6 6.3649 -6.4004 0.0110 18 1 6.5928 -5.5827 0.6949 19 6 6.8513 -6.0565 -1.4143 20 6 8.2569 -6.7005 -1.4317 21 6 8.1750 -7.7980 -0.3937 22 8 8.9611 -8.7157 -0.2896 23 7 7.1043 -7.6082 0.3963 24 1 -0.4850 0.8399 -0.0004 25 1 0.6243 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 3.1569 -3.4352 -0.0002 28 1 2.3067 -6.8222 -0.0016 29 1 4.3307 -4.7369 0.0001 30 1 6.2055 -6.5092 -2.1667 31 1 6.9148 -4.9775 -1.5551 32 1 8.4722 -7.1201 -2.4144 33 1 9.0157 -5.9680 -1.1562 34 1 6.8524 -8.1943 1.1270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246666042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:01 Heat of formation + Delta-G solvation = -63.246784 kcal Electronic energy + Delta-G solvation = -20084.356743 eV Core-core repulsion = 16632.799649 eV Total energy + Delta-G solvation = -3451.557093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23621 -39.95087 -38.86431 -36.58405 -35.61932 -34.42039 -32.42228 -31.83866 -31.23485 -28.29233 -27.19563 -23.36698 -23.07599 -21.40359 -20.90525 -20.57628 -19.22717 -18.22751 -17.64929 -16.88512 -16.27677 -15.74676 -15.62146 -15.36563 -14.91094 -14.76191 -14.47358 -14.13547 -14.03959 -13.62979 -13.29721 -13.16221 -12.54631 -12.23222 -12.10766 -11.64055 -11.30226 -11.11666 -10.95900 -10.65978 -10.43296 -10.26877 -9.89237 -9.54184 -9.52669 -8.90327 -8.48118 -7.98407 -6.27277 -4.35710 1.67900 2.03507 2.25493 2.92973 3.17084 3.21933 3.24139 3.49074 3.57434 3.79855 3.82399 4.06877 4.24203 4.39328 4.50273 4.86345 5.09105 5.13004 5.20995 5.29708 5.41643 6.21770 6.38560 6.54836 6.59982 7.15444 7.24723 7.29565 7.39196 7.48530 7.79026 7.84745 7.92932 8.53276 8.69997 8.95316 9.31181 10.82720 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003800 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.623056 B = 7367.164944 C = 8426.919459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.264 3.736 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.575 6.575 13 N -0.543 5.543 14 N -0.515 5.515 15 C 0.503 3.497 16 O -0.528 6.528 17 C 0.124 3.876 18 H 0.115 0.885 19 C -0.125 4.125 20 C -0.155 4.155 21 C 0.524 3.476 22 O -0.530 6.530 23 N -0.708 5.708 24 H 0.268 0.732 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.381 0.619 28 H 0.436 0.564 29 H 0.424 0.576 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.870 -7.706 -1.436 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.378 5.378 11 C 0.400 3.600 12 O -0.449 6.449 13 N -0.303 5.303 14 N -0.266 5.266 15 C 0.286 3.714 16 O -0.402 6.402 17 C 0.013 3.987 18 H 0.133 0.867 19 C -0.164 4.164 20 C -0.195 4.195 21 C 0.311 3.689 22 O -0.406 6.406 23 N -0.365 5.365 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.214 0.786 28 H 0.281 0.719 29 H 0.266 0.734 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 14.919 -8.743 -1.478 17.356 hybrid contribution 0.616 0.919 0.388 1.172 sum 15.536 -7.825 -1.090 17.429 Atomic orbital electron populations 1.69952 1.06138 1.27649 1.48225 1.24941 0.94925 0.99472 0.94549 0.86450 0.79415 0.82223 0.78661 1.20025 1.21027 1.20039 1.21114 0.93151 0.90271 1.54065 0.91938 1.19105 0.87680 0.80791 0.98075 1.45806 1.10651 1.04483 1.76845 1.16014 0.84247 0.80910 0.78817 1.91000 1.12253 1.82508 1.59120 1.44895 0.91863 1.10317 1.83182 1.44786 0.96328 1.10105 1.75397 1.20838 0.87849 0.84980 0.77721 1.90782 1.79296 1.20734 1.49409 1.21467 0.87770 0.89695 0.99765 0.86722 1.22709 0.96259 1.03640 0.93763 1.22383 0.98394 0.98047 1.00644 1.20836 0.80044 0.85898 0.82171 1.90783 1.43515 1.34248 1.72014 1.45926 1.27455 1.27503 1.35567 0.92213 0.95288 0.95324 0.78622 0.71944 0.73421 0.88954 0.87354 0.87367 0.87004 0.74272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 13.29 55.43 0.74 -23.97 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -13.62 9.28 -34.44 -0.32 -13.94 16 8 H 0.06 1.40 7.60 -52.49 -0.40 1.00 16 9 C 0.26 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.72 -13.53 5.51 -66.41 -0.37 -13.89 16 11 C 0.70 13.17 8.68 -86.92 -0.75 12.41 16 12 O -0.57 -13.45 17.18 5.29 0.09 -13.36 16 13 N -0.54 -7.76 6.26 27.63 0.17 -7.58 16 14 N -0.52 -5.17 6.26 31.22 0.20 -4.97 16 15 C 0.50 4.88 7.15 -10.98 -0.08 4.80 16 16 O -0.53 -7.24 16.38 5.55 0.09 -7.15 16 17 C 0.12 0.75 3.93 -68.16 -0.27 0.49 16 18 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 19 C -0.13 -0.56 6.68 -25.10 -0.17 -0.72 16 20 C -0.15 -0.83 6.86 -26.74 -0.18 -1.01 16 21 C 0.52 5.05 8.43 -10.86 -0.09 4.96 16 22 O -0.53 -7.47 18.03 5.56 0.10 -7.37 16 23 N -0.71 -5.84 5.46 -53.88 -0.29 -6.13 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.38 5.60 6.24 -40.82 -0.25 5.35 16 28 H 0.44 6.29 8.10 -182.59 -1.48 4.81 16 29 H 0.42 3.17 6.70 -182.59 -1.22 1.95 16 30 H 0.09 0.51 7.90 -51.93 -0.41 0.09 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.42 3.56 8.94 -40.82 -0.36 3.19 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -35.73 303.74 -7.51 -43.24 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.80 Total: 7.19 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -1.99 Total: 15.03 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.44 Total: -56.55 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: 0.28 Total: -27.88 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.73 -7.51 -43.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246666042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.010 kcal (2) G-P(sol) polarization free energy of solvation -35.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds