Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99546 * 2 1 4 4 H 1.48503 * 109.47337 * 240.00257 * 3 2 1 5 5 H 1.48505 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47432 * 119.99990 * 3 2 1 7 7 C 1.37875 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46930 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99963 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99861 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.40105 * 119.99633 * 0.02562 * 13 11 10 15 15 C 1.34777 * 119.99775 * 179.72021 * 14 13 11 16 16 O 1.21283 * 120.00222 * 0.28016 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27576 * 15 14 13 18 18 H 1.09007 * 110.21015 * 41.92786 * 17 15 14 19 19 C 1.54480 * 110.24345 * 280.00602 * 17 15 14 20 20 C 1.54630 * 101.76203 * 215.58068 * 19 17 15 21 21 C 1.51283 * 104.19487 * 24.79311 * 20 19 17 22 22 O 1.21281 * 124.93993 * 163.74610 * 21 20 19 23 23 N 1.34412 * 110.12057 * 343.75164 * 21 20 19 24 24 H 0.96990 * 120.00606 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47130 * 60.00861 * 9 7 2 26 26 H 1.08997 * 109.47587 * 300.00397 * 9 7 2 27 27 H 0.97000 * 119.99500 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00523 * 179.97438 * 13 11 10 29 29 H 0.97001 * 120.00437 * 0.02562 * 14 13 11 30 30 H 1.08993 * 110.97070 * 333.69625 * 19 17 15 31 31 H 1.08998 * 110.97000 * 97.46369 * 19 17 15 32 32 H 1.08998 * 110.48861 * 143.47458 * 20 19 17 33 33 H 1.09003 * 110.48909 * 265.98758 * 20 19 17 34 34 H 0.96992 * 124.35287 * 179.56753 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5588 -5.1055 -0.0020 13 7 2.6300 -5.9076 -0.0016 14 7 4.0074 -5.6515 -0.0010 15 6 4.8833 -6.6758 0.0041 16 8 4.4791 -7.8193 0.0032 17 6 6.3649 -6.4004 0.0110 18 1 6.5928 -5.5827 0.6949 19 6 6.8513 -6.0565 -1.4143 20 6 8.2569 -6.7005 -1.4317 21 6 8.1750 -7.7980 -0.3937 22 8 8.9611 -8.7157 -0.2896 23 7 7.1043 -7.6082 0.3963 24 1 -0.4850 0.8399 -0.0004 25 1 0.6243 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 3.1569 -3.4352 -0.0002 28 1 2.3067 -6.8222 -0.0016 29 1 4.3307 -4.7369 0.0001 30 1 6.2055 -6.5092 -2.1667 31 1 6.9148 -4.9775 -1.5551 32 1 8.4722 -7.1201 -2.4144 33 1 9.0157 -5.9680 -1.1562 34 1 6.8524 -8.1943 1.1270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246666042.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -95.426834 kcal Electronic energy + Delta-G solvation = -20085.752174 eV Core-core repulsion = 16632.799649 eV Total energy + Delta-G solvation = -3452.952525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.02905 -41.14101 -40.00384 -37.40880 -36.78465 -36.20476 -34.25598 -32.60921 -32.08402 -29.34095 -28.74305 -24.92728 -23.95960 -22.20957 -22.09434 -21.51907 -20.56914 -19.13640 -18.57942 -18.10936 -17.56121 -16.85887 -16.77547 -16.65479 -16.28876 -15.95302 -15.81073 -15.12478 -14.90206 -14.70681 -14.18053 -14.10351 -13.99788 -13.57961 -13.02375 -12.89931 -12.65485 -12.49949 -12.22218 -12.05971 -11.71161 -11.45629 -11.34183 -11.01057 -10.76241 -10.25868 -10.07314 -9.36815 -8.23114 -6.39646 0.67279 1.21913 1.50986 1.53659 1.54509 1.62421 2.05056 2.09193 2.35088 2.48044 3.05750 3.13246 3.31569 3.58168 3.99396 4.03912 4.12111 4.51701 4.88269 5.01866 5.03660 5.08289 5.27377 5.29834 5.43303 5.49119 5.67432 5.81879 5.91855 5.94168 6.22492 6.66026 6.75994 7.13779 7.25957 7.31248 7.48243 8.88801 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003800 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.623056 B = 7367.164944 C = 8426.919459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.281 3.719 10 N -0.711 5.711 11 C 0.704 3.296 12 O -0.628 6.628 13 N -0.533 5.533 14 N -0.503 5.503 15 C 0.508 3.492 16 O -0.569 6.569 17 C 0.130 3.870 18 H 0.161 0.839 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.512 3.488 22 O -0.586 6.586 23 N -0.711 5.711 24 H 0.267 0.733 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.404 0.596 28 H 0.437 0.563 29 H 0.439 0.561 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.866 -5.806 -1.743 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.590 4.590 8 H 0.112 0.888 9 C 0.158 3.842 10 N -0.366 5.366 11 C 0.403 3.597 12 O -0.505 6.505 13 N -0.289 5.289 14 N -0.257 5.257 15 C 0.294 3.706 16 O -0.446 6.446 17 C 0.020 3.980 18 H 0.178 0.822 19 C -0.157 4.157 20 C -0.184 4.184 21 C 0.301 3.699 22 O -0.466 6.466 23 N -0.365 5.365 24 H 0.076 0.924 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.241 0.759 28 H 0.283 0.717 29 H 0.284 0.716 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 17.991 -6.847 -1.787 19.332 hybrid contribution -0.313 0.199 0.500 0.623 sum 17.677 -6.647 -1.288 18.929 Atomic orbital electron populations 1.70133 1.08409 1.28603 1.49983 1.26046 0.95664 1.03896 0.93973 0.85209 0.77834 0.76528 0.79649 1.18307 1.22000 1.18474 1.21573 0.94662 0.89937 1.52821 0.88808 1.18548 0.88101 0.83035 0.94532 1.45247 1.11050 1.03325 1.77012 1.15968 0.83963 0.81367 0.78395 1.90966 1.15016 1.83495 1.61067 1.44434 0.93942 1.09070 1.81449 1.44872 0.93830 1.11324 1.75648 1.21653 0.89107 0.84011 0.75851 1.90784 1.80175 1.22576 1.51045 1.21829 0.84164 0.89764 1.02266 0.82177 1.22854 0.94939 1.06003 0.91873 1.22436 0.99825 0.96946 0.99220 1.21656 0.79432 0.86082 0.82728 1.90748 1.45583 1.36743 1.73571 1.46115 1.27266 1.28090 1.35018 0.92377 0.99106 0.99225 0.75877 0.71744 0.71621 0.90077 0.83228 0.86960 0.84163 0.74929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.18 13.29 21.45 0.28 -52.90 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.98 38.45 29.54 68.60 2.03 40.48 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.55 -26.70 9.28 25.60 0.24 -26.46 16 8 H 0.09 3.84 7.60 -2.91 -0.02 3.82 16 9 C 0.28 13.98 5.43 85.63 0.46 14.45 16 10 N -0.71 -25.85 5.51 -482.30 -2.66 -28.50 16 11 C 0.70 26.34 8.68 179.06 1.55 27.89 16 12 O -0.63 -30.32 17.18 -3.98 -0.07 -30.39 16 13 N -0.53 -14.60 6.26 -184.75 -1.16 -15.76 16 14 N -0.50 -8.63 6.26 -173.53 -1.09 -9.72 16 15 C 0.51 8.53 7.15 87.66 0.63 9.16 16 16 O -0.57 -14.99 16.38 -3.04 -0.05 -15.04 16 17 C 0.13 1.07 3.93 44.70 0.18 1.25 16 18 H 0.16 0.03 8.14 -2.38 -0.02 0.01 16 19 C -0.12 -0.51 6.68 31.65 0.21 -0.30 16 20 C -0.14 -1.04 6.86 30.59 0.21 -0.83 16 21 C 0.51 9.14 8.43 87.90 0.74 9.88 16 22 O -0.59 -16.66 18.03 -3.03 -0.05 -16.71 16 23 N -0.71 -10.40 5.46 -442.97 -2.42 -12.82 16 24 H 0.27 14.39 8.31 -92.72 -0.77 13.62 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 27 H 0.40 10.66 6.24 -92.71 -0.58 10.08 16 28 H 0.44 12.43 8.10 -213.32 -1.73 10.70 16 29 H 0.44 4.69 6.70 -213.32 -1.43 3.26 16 30 H 0.08 0.60 7.90 -2.39 -0.02 0.58 16 31 H 0.15 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.41 6.71 8.94 -92.71 -0.83 5.88 16 Total: -1.00 -83.03 303.74 -3.87 -86.90 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -3.37 Total: 18.76 kcal Atomic # 6 Polarization: 31.02 SS G_CDS: 4.68 Total: 35.70 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -7.03 Total: -119.70 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -0.17 Total: -62.14 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -83.03 -3.87 -86.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246666042.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.526 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds