Wall clock time and date at job start Mon Mar 30 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46978 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.47064 * 29.99684 * 3 2 1 6 6 H 1.48499 * 109.47489 * 149.99617 * 3 2 1 7 7 C 1.37881 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99292 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99779 * 180.02562 * 10 9 7 12 12 O 1.21580 * 120.00414 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99802 * 179.97438 * 11 10 9 14 14 N 1.40098 * 119.99854 * 0.02562 * 13 11 10 15 15 C 1.34786 * 119.99849 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00011 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99707 * 179.97438 * 15 14 13 18 18 H 1.08996 * 110.21874 * 320.46887 * 17 15 14 19 19 C 1.54484 * 110.24907 * 82.49952 * 17 15 14 20 20 C 1.54624 * 101.76286 * 93.57871 * 19 17 15 21 21 C 1.51281 * 104.20087 * 24.80203 * 20 19 17 22 22 O 1.21279 * 124.94630 * 164.01180 * 21 20 19 23 23 N 1.34424 * 110.11017 * 343.74403 * 21 20 19 24 24 H 0.96991 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47336 * 60.00019 * 9 7 2 26 26 H 1.08994 * 109.47482 * 299.99747 * 9 7 2 27 27 H 0.97001 * 120.00134 * 359.97438 * 10 9 7 28 28 H 0.96996 * 120.00330 * 179.97438 * 13 11 10 29 29 H 0.97001 * 120.00491 * 359.97438 * 14 13 11 30 30 H 1.09000 * 110.96838 * 211.70493 * 19 17 15 31 31 H 1.09000 * 110.96325 * 335.42536 * 19 17 15 32 32 H 1.09000 * 110.48926 * 266.12016 * 20 19 17 33 33 H 1.09001 * 110.48194 * 143.48372 * 20 19 17 34 34 H 0.97006 * 124.34522 * 179.61209 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5585 -5.1056 -0.0003 13 7 2.6297 -5.9078 0.0021 14 7 4.0071 -5.6517 0.0036 15 6 4.8830 -6.6762 0.0047 16 8 4.4787 -7.8196 0.0049 17 6 6.3645 -6.4007 0.0057 18 1 6.5912 -5.5566 -0.6455 19 6 6.8545 -6.1163 1.4430 20 6 7.3161 -7.5189 1.9019 21 6 7.6430 -8.2419 0.6140 22 8 8.2933 -9.2626 0.5361 23 7 7.1028 -7.5916 -0.4311 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8902 27 1 3.1568 -3.4354 0.0021 28 1 2.3064 -6.8223 0.0022 29 1 4.3304 -4.7372 0.0038 30 1 7.6874 -5.4132 1.4392 31 1 6.0398 -5.7494 2.0673 32 1 6.5131 -8.0299 2.4331 33 1 8.2025 -7.4416 2.5316 34 1 7.1895 -7.8734 -1.3553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246666052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:03 Heat of formation + Delta-G solvation = -62.204128 kcal Electronic energy + Delta-G solvation = -20185.948692 eV Core-core repulsion = 16734.436812 eV Total energy + Delta-G solvation = -3451.511881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28477 -39.88762 -38.78278 -36.53883 -35.56473 -34.41020 -32.41368 -31.84091 -31.17137 -28.20633 -27.18950 -23.53382 -23.06886 -21.34139 -20.86955 -20.55100 -19.19174 -18.17843 -17.67609 -16.95979 -16.12741 -15.65888 -15.60957 -15.32816 -14.92408 -14.69713 -14.49974 -14.09690 -13.99833 -13.73116 -13.27579 -13.14814 -12.30738 -12.11728 -12.01855 -11.77636 -11.27194 -11.09452 -10.96951 -10.73620 -10.44996 -10.23224 -9.91489 -9.52150 -9.46189 -8.90107 -8.45900 -7.96843 -6.27209 -4.35388 1.70327 2.07646 2.33070 2.92930 3.16548 3.22286 3.24905 3.53838 3.58984 3.85112 3.92761 4.02212 4.24432 4.33189 4.62961 4.87325 5.09339 5.15390 5.24289 5.32052 5.43451 6.23471 6.41349 6.57846 6.59720 7.16789 7.26542 7.32519 7.39756 7.50698 7.80536 7.87525 7.95021 8.54544 8.71031 8.96753 9.31529 10.82857 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.025517 B = 0.003757 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.036383 B = 7451.209916 C = 8314.560676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.264 3.736 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.576 6.576 13 N -0.543 5.543 14 N -0.517 5.517 15 C 0.495 3.505 16 O -0.526 6.526 17 C 0.124 3.876 18 H 0.122 0.878 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.529 3.471 22 O -0.530 6.530 23 N -0.708 5.708 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.381 0.619 28 H 0.435 0.565 29 H 0.423 0.577 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.027 -7.830 1.600 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.143 3.857 10 N -0.378 5.378 11 C 0.400 3.600 12 O -0.450 6.450 13 N -0.303 5.303 14 N -0.269 5.269 15 C 0.278 3.722 16 O -0.400 6.400 17 C 0.013 3.987 18 H 0.140 0.860 19 C -0.161 4.161 20 C -0.198 4.198 21 C 0.316 3.684 22 O -0.405 6.405 23 N -0.363 5.363 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.214 0.786 28 H 0.280 0.720 29 H 0.265 0.735 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 14.974 -8.980 1.685 17.541 hybrid contribution 0.727 1.067 -0.523 1.393 sum 15.701 -7.913 1.162 17.620 Atomic orbital electron populations 1.69967 1.06135 1.27513 1.48338 1.24948 0.94928 0.99484 0.94571 0.86390 0.79554 0.82545 0.78246 1.20438 1.20966 1.19728 1.21152 0.93182 0.90261 1.53909 0.91895 1.19104 0.87692 0.80816 0.98066 1.45802 1.10638 1.04482 1.76885 1.16018 0.84255 0.80917 0.78818 1.90998 1.12293 1.82532 1.59140 1.44888 0.91992 1.10270 1.83146 1.44859 0.96255 1.10128 1.75622 1.21225 0.88234 0.85020 0.77709 1.90776 1.79340 1.20783 1.49095 1.21427 0.87363 0.90150 0.99798 0.86043 1.22670 1.03330 0.97706 0.92358 1.22383 1.04765 0.95811 0.96878 1.20831 0.77418 0.83411 0.86744 1.90770 1.40108 1.23277 1.86374 1.45873 1.52467 1.27756 1.10236 0.92284 0.95332 0.95303 0.78621 0.71982 0.73506 0.87861 0.88152 0.87268 0.87317 0.74478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 13.29 55.43 0.74 -23.99 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -13.62 9.28 -34.44 -0.32 -13.94 16 8 H 0.06 1.42 7.60 -52.49 -0.40 1.02 16 9 C 0.26 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.72 -13.59 5.51 -66.42 -0.37 -13.95 16 11 C 0.70 13.24 8.68 -86.91 -0.75 12.49 16 12 O -0.58 -13.54 17.18 5.29 0.09 -13.45 16 13 N -0.54 -7.84 6.26 27.63 0.17 -7.67 16 14 N -0.52 -5.23 6.26 31.22 0.20 -5.04 16 15 C 0.50 4.87 7.11 -10.98 -0.08 4.79 16 16 O -0.53 -7.41 16.42 5.56 0.09 -7.32 16 17 C 0.12 0.74 3.93 -68.16 -0.27 0.47 16 18 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 19 C -0.12 -0.54 6.69 -25.10 -0.17 -0.70 16 20 C -0.16 -1.07 6.85 -26.74 -0.18 -1.26 16 21 C 0.53 5.50 8.43 -10.86 -0.09 5.41 16 22 O -0.53 -7.82 18.03 5.56 0.10 -7.72 16 23 N -0.71 -5.69 5.47 -53.88 -0.29 -5.99 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.38 5.64 6.24 -40.82 -0.25 5.38 16 28 H 0.44 6.38 8.10 -182.60 -1.48 4.90 16 29 H 0.42 3.20 6.70 -182.60 -1.22 1.97 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.40 7.89 -51.93 -0.41 -0.01 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.42 3.01 8.96 -40.82 -0.37 2.64 16 LS Contribution 303.77 15.07 4.58 4.58 Total: -1.00 -36.23 303.77 -7.51 -43.74 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.80 Total: 7.06 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -1.99 Total: 15.31 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.44 Total: -56.63 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: 0.28 Total: -28.48 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.23 -7.51 -43.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246666052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.463 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds