Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46978 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.47064 * 29.99684 * 3 2 1 6 6 H 1.48499 * 109.47489 * 149.99617 * 3 2 1 7 7 C 1.37881 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99292 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99779 * 180.02562 * 10 9 7 12 12 O 1.21580 * 120.00414 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99802 * 179.97438 * 11 10 9 14 14 N 1.40098 * 119.99854 * 0.02562 * 13 11 10 15 15 C 1.34786 * 119.99849 * 179.97438 * 14 13 11 16 16 O 1.21279 * 120.00011 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99707 * 179.97438 * 15 14 13 18 18 H 1.08996 * 110.21874 * 320.46887 * 17 15 14 19 19 C 1.54484 * 110.24907 * 82.49952 * 17 15 14 20 20 C 1.54624 * 101.76286 * 93.57871 * 19 17 15 21 21 C 1.51281 * 104.20087 * 24.80203 * 20 19 17 22 22 O 1.21279 * 124.94630 * 164.01180 * 21 20 19 23 23 N 1.34424 * 110.11017 * 343.74403 * 21 20 19 24 24 H 0.96991 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47336 * 60.00019 * 9 7 2 26 26 H 1.08994 * 109.47482 * 299.99747 * 9 7 2 27 27 H 0.97001 * 120.00134 * 359.97438 * 10 9 7 28 28 H 0.96996 * 120.00330 * 179.97438 * 13 11 10 29 29 H 0.97001 * 120.00491 * 359.97438 * 14 13 11 30 30 H 1.09000 * 110.96838 * 211.70493 * 19 17 15 31 31 H 1.09000 * 110.96325 * 335.42536 * 19 17 15 32 32 H 1.09000 * 110.48926 * 266.12016 * 20 19 17 33 33 H 1.09001 * 110.48194 * 143.48372 * 20 19 17 34 34 H 0.97006 * 124.34522 * 179.61209 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5585 -5.1056 -0.0003 13 7 2.6297 -5.9078 0.0021 14 7 4.0071 -5.6517 0.0036 15 6 4.8830 -6.6762 0.0047 16 8 4.4787 -7.8196 0.0049 17 6 6.3645 -6.4007 0.0057 18 1 6.5912 -5.5566 -0.6455 19 6 6.8545 -6.1163 1.4430 20 6 7.3161 -7.5189 1.9019 21 6 7.6430 -8.2419 0.6140 22 8 8.2933 -9.2626 0.5361 23 7 7.1028 -7.5916 -0.4311 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8902 27 1 3.1568 -3.4354 0.0021 28 1 2.3064 -6.8223 0.0022 29 1 4.3304 -4.7372 0.0038 30 1 7.6874 -5.4132 1.4392 31 1 6.0398 -5.7494 2.0673 32 1 6.5131 -8.0299 2.4331 33 1 8.2025 -7.4416 2.5316 34 1 7.1895 -7.8734 -1.3553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246666052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = -94.892162 kcal Electronic energy + Delta-G solvation = -20187.366152 eV Core-core repulsion = 16734.436812 eV Total energy + Delta-G solvation = -3452.929340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.08268 -41.13625 -39.92062 -37.40434 -36.73535 -36.19930 -34.25252 -32.60096 -32.08111 -29.30591 -28.70226 -24.93006 -24.15767 -22.14962 -22.07408 -21.55638 -20.53749 -19.06437 -18.54626 -18.29684 -17.55893 -16.87312 -16.79082 -16.41756 -16.27144 -15.94428 -15.82284 -15.10262 -14.87549 -14.72535 -14.36207 -14.11357 -14.00739 -13.59893 -12.88013 -12.71567 -12.59587 -12.42148 -12.29480 -12.17997 -11.69055 -11.47444 -11.41773 -11.03692 -10.77815 -10.25094 -10.06844 -9.34796 -8.23405 -6.39710 0.69421 1.25526 1.50788 1.52767 1.53510 1.63656 2.06080 2.10991 2.35111 2.48202 3.13155 3.18633 3.33270 3.49492 3.92271 4.05392 4.23263 4.46853 4.82754 4.98208 5.02659 5.08194 5.29432 5.29816 5.43785 5.49923 5.68488 5.82634 5.91093 5.94796 6.25683 6.67617 6.77961 7.14236 7.27041 7.32371 7.48950 8.88761 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.025517 B = 0.003757 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.036383 B = 7451.209916 C = 8314.560676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.248 1.248 7 C -0.551 4.551 8 H 0.094 0.906 9 C 0.281 3.719 10 N -0.710 5.710 11 C 0.704 3.296 12 O -0.629 6.629 13 N -0.534 5.534 14 N -0.505 5.505 15 C 0.499 3.501 16 O -0.570 6.570 17 C 0.130 3.870 18 H 0.172 0.828 19 C -0.112 4.112 20 C -0.158 4.158 21 C 0.517 3.483 22 O -0.585 6.585 23 N -0.704 5.704 24 H 0.267 0.733 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.404 0.596 28 H 0.437 0.563 29 H 0.438 0.562 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.107 -5.951 1.813 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.171 1.171 7 C -0.589 4.589 8 H 0.112 0.888 9 C 0.158 3.842 10 N -0.366 5.366 11 C 0.403 3.597 12 O -0.507 6.507 13 N -0.290 5.290 14 N -0.259 5.259 15 C 0.285 3.715 16 O -0.446 6.446 17 C 0.019 3.981 18 H 0.189 0.811 19 C -0.150 4.150 20 C -0.198 4.198 21 C 0.305 3.695 22 O -0.465 6.465 23 N -0.357 5.357 24 H 0.076 0.924 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.241 0.759 28 H 0.282 0.718 29 H 0.283 0.717 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 18.135 -7.098 1.889 19.566 hybrid contribution -0.224 0.362 -0.607 0.741 sum 17.911 -6.736 1.282 19.179 Atomic orbital electron populations 1.70144 1.08411 1.28520 1.50055 1.26051 0.95674 1.03903 0.94001 0.85158 0.78712 0.76935 0.78407 1.19939 1.21775 1.17123 1.21601 0.94658 0.89918 1.52677 0.88811 1.18547 0.88111 0.83060 0.94517 1.45241 1.11035 1.03313 1.77041 1.15976 0.83968 0.81381 0.78401 1.90962 1.15074 1.83520 1.61103 1.44437 0.94117 1.08998 1.81399 1.44970 0.93713 1.11373 1.75820 1.22152 0.89597 0.84011 0.75764 1.90780 1.80269 1.22719 1.50863 1.21806 0.83599 0.90438 1.02261 0.81121 1.22826 1.04828 0.96638 0.90682 1.22441 1.05300 0.96880 0.95198 1.21531 0.76610 0.82861 0.88473 1.90733 1.42694 1.25723 1.87361 1.45994 1.51459 1.28139 1.10135 0.92391 0.99256 0.99115 0.75878 0.71830 0.71697 0.84177 0.87135 0.88216 0.85567 0.74297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.25 13.29 21.45 0.28 -52.96 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.98 38.55 29.54 68.60 2.03 40.57 16 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.29 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 7 C -0.55 -26.68 9.28 25.60 0.24 -26.44 16 8 H 0.09 3.86 7.60 -2.91 -0.02 3.84 16 9 C 0.28 14.01 5.43 85.63 0.46 14.47 16 10 N -0.71 -25.95 5.51 -482.31 -2.66 -28.60 16 11 C 0.70 26.47 8.68 179.05 1.55 28.03 16 12 O -0.63 -30.54 17.18 -3.97 -0.07 -30.61 16 13 N -0.53 -14.75 6.26 -184.75 -1.16 -15.91 16 14 N -0.50 -8.69 6.26 -173.53 -1.09 -9.78 16 15 C 0.50 8.41 7.11 87.65 0.62 9.04 16 16 O -0.57 -15.35 16.42 -3.03 -0.05 -15.40 16 17 C 0.13 1.00 3.93 44.70 0.18 1.17 16 18 H 0.17 -0.21 8.14 -2.39 -0.02 -0.22 16 19 C -0.11 -0.45 6.69 31.65 0.21 -0.24 16 20 C -0.16 -1.76 6.85 30.59 0.21 -1.55 16 21 C 0.52 10.15 8.43 87.90 0.74 10.89 16 22 O -0.58 -17.51 18.03 -3.02 -0.05 -17.56 16 23 N -0.70 -9.72 5.47 -442.97 -2.42 -12.15 16 24 H 0.27 14.36 8.31 -92.72 -0.77 13.59 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.40 10.72 6.24 -92.71 -0.58 10.14 16 28 H 0.44 12.60 8.10 -213.33 -1.73 10.88 16 29 H 0.44 4.71 6.70 -213.32 -1.43 3.28 16 30 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.11 0.33 7.89 -2.39 -0.02 0.31 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.42 5.34 8.96 -92.70 -0.83 4.51 16 Total: -1.00 -84.16 303.77 -3.88 -88.04 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -3.37 Total: 18.36 kcal Atomic # 6 Polarization: 31.32 SS G_CDS: 4.68 Total: 36.00 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -7.04 Total: -119.40 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -0.17 Total: -63.57 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.57 kcal Total: -84.16 -3.88 -88.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246666052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.855 kcal (2) G-P(sol) polarization free energy of solvation -84.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds