Wall clock time and date at job start Mon Mar 30 2020 01:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86796 * 120.00201 * 2 1 4 4 H 1.48499 * 109.47357 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47044 * 120.00239 * 3 2 1 7 7 C 1.40432 * 119.99415 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99581 * 179.97438 * 7 2 1 9 9 C 1.40370 * 120.00441 * 0.02562 * 7 2 1 10 10 N 1.33184 * 126.67988 * 179.97438 * 9 7 2 11 11 C 1.34299 * 105.47576 * 180.02562 * 10 9 7 12 12 C 1.48459 * 126.20105 * 179.97438 * 11 10 9 13 13 C 1.39064 * 119.85127 * 359.97438 * 12 11 10 14 14 C 1.38016 * 119.63406 * 180.02562 * 13 12 11 15 15 C 1.38047 * 119.90467 * 0.11929 * 14 13 12 16 16 C 1.38986 * 120.80065 * 359.97438 * 15 14 13 17 17 C 1.37489 * 119.74738 * 359.78661 * 16 15 14 18 18 C 1.50610 * 122.61950 * 180.68402 * 17 16 15 19 19 C 1.52740 * 110.58531 * 342.17196 * 18 17 16 20 20 C 1.53324 * 108.36001 * 51.10370 * 19 18 17 21 21 C 1.50649 * 117.70666 * 179.72069 * 16 15 14 22 22 N 1.31259 * 107.59379 * 0.23895 * 11 10 9 23 23 O 1.21261 * 110.53374 * 359.57813 * 22 11 10 24 24 H 0.97003 * 119.99531 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.18563 * 0.04777 * 13 12 11 26 26 H 1.07993 * 120.04660 * 180.14304 * 14 13 12 27 27 H 1.07999 * 119.60157 * 179.97438 * 15 14 13 28 28 H 1.08999 * 109.25735 * 102.45848 * 18 17 16 29 29 H 1.09003 * 109.25308 * 221.93047 * 18 17 16 30 30 H 1.09007 * 109.68726 * 291.39057 * 19 18 17 31 31 H 1.09003 * 109.69147 * 170.82117 * 19 18 17 32 32 H 1.09005 * 109.68099 * 170.46131 * 20 19 18 33 33 H 1.09007 * 109.68082 * 49.91656 * 20 19 18 34 34 H 1.09003 * 109.25048 * 42.02169 * 21 16 15 35 35 H 1.08999 * 109.25411 * 282.60086 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.0930 1.6964 -1.2125 5 1 1.2743 2.7465 0.0006 6 1 3.0931 1.6963 1.2125 7 6 2.0073 -1.2162 -0.0005 8 1 3.0873 -1.2163 -0.0010 9 6 1.3054 -2.4319 -0.0016 10 7 1.8326 -3.6549 -0.0027 11 6 0.7858 -4.4963 -0.0041 12 6 0.8530 -5.9794 -0.0062 13 6 2.0892 -6.6163 -0.0074 14 6 2.1465 -7.9953 -0.0099 15 6 0.9794 -8.7326 -0.0136 16 6 -0.2599 -8.1033 -0.0143 17 6 -0.3278 -6.7301 -0.0069 18 6 -1.6348 -5.9819 0.0080 19 6 -2.7808 -6.8943 -0.4246 20 6 -2.7167 -8.1790 0.4098 21 6 -1.4883 -8.9754 -0.0249 22 7 -0.3073 -3.7697 -0.0089 23 8 -0.0329 -2.5886 -0.0023 24 1 -0.4849 0.8401 0.0004 25 1 2.9995 -6.0352 -0.0061 26 1 3.1029 -8.4968 -0.0086 27 1 1.0298 -9.8114 -0.0160 28 1 -1.8279 -5.6157 1.0163 29 1 -1.5722 -5.1355 -0.6760 30 1 -2.6772 -7.1378 -1.4821 31 1 -3.7337 -6.3930 -0.2544 32 1 -3.6164 -8.7711 0.2419 33 1 -2.6351 -7.9263 1.4671 34 1 -1.3414 -9.8114 0.6590 35 1 -1.6474 -9.3599 -1.0324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247385813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:49 Heat of formation + Delta-G solvation = 38.754457 kcal Electronic energy + Delta-G solvation = -19978.101978 eV Core-core repulsion = 16941.817254 eV Total energy + Delta-G solvation = -3036.284725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.04846 -40.95711 -37.06550 -36.11378 -35.77363 -33.82835 -31.85605 -31.15845 -29.77700 -28.52159 -25.07729 -24.46337 -23.95021 -22.96242 -22.03317 -20.21610 -19.66642 -17.93688 -17.45917 -17.09202 -17.01828 -16.40350 -16.11162 -15.18072 -15.06174 -14.80241 -14.64036 -14.36282 -13.97524 -13.56050 -13.45200 -13.34346 -13.09783 -12.79789 -12.58667 -12.53868 -12.15205 -12.02065 -11.99525 -11.78796 -11.52102 -11.39335 -11.22680 -10.85935 -10.54515 -9.49723 -9.36741 -8.98085 -7.13443 0.02207 0.43579 1.02769 1.38780 1.57434 1.61160 2.04934 2.13552 2.84216 3.05069 3.10397 3.35748 3.70423 3.77761 4.00901 4.06240 4.15003 4.25922 4.29674 4.46558 4.57506 4.66475 4.74704 4.85853 4.90660 4.97236 4.99906 5.10006 5.15790 5.20320 5.28633 5.39233 5.44089 5.56279 5.65611 5.76742 5.85687 6.01361 6.10202 6.25513 6.41549 8.03749 8.23535 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.004792 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.909361 B = 5841.701667 C = 6645.914190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.029 3.971 3 Si 1.023 2.977 4 H -0.250 1.250 5 H -0.258 1.258 6 H -0.250 1.250 7 C -0.434 4.434 8 H 0.122 0.878 9 C 0.271 3.729 10 N -0.634 5.634 11 C 0.196 3.804 12 C -0.041 4.041 13 C -0.103 4.103 14 C -0.121 4.121 15 C -0.104 4.104 16 C -0.088 4.088 17 C -0.066 4.066 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.072 4.072 22 N -0.468 5.468 23 O 0.012 5.988 24 H 0.306 0.694 25 H 0.114 0.886 26 H 0.159 0.841 27 H 0.167 0.833 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -12.535 -0.149 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.193 4.193 3 Si 0.839 3.161 4 H -0.174 1.174 5 H -0.182 1.182 6 H -0.174 1.174 7 C -0.472 4.472 8 H 0.139 0.861 9 C 0.083 3.917 10 N -0.379 5.379 11 C -0.075 4.075 12 C -0.043 4.043 13 C -0.123 4.123 14 C -0.138 4.138 15 C -0.122 4.122 16 C -0.088 4.088 17 C -0.068 4.068 18 C -0.118 4.118 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.108 4.108 22 N -0.202 5.202 23 O -0.031 6.031 24 H 0.118 0.882 25 H 0.132 0.868 26 H 0.177 0.823 27 H 0.184 0.816 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.564 -12.929 -0.155 13.182 hybrid contribution 0.437 1.593 0.053 1.653 sum -2.127 -11.336 -0.102 11.534 Atomic orbital electron populations 1.69695 1.09764 1.33057 1.29742 1.27405 0.95930 1.05789 0.90165 0.84647 0.78236 0.72292 0.80905 1.17382 1.18162 1.17398 1.19115 0.95736 0.86070 1.46230 0.86051 1.24781 0.80245 0.95026 0.91670 1.72322 1.28661 0.98705 1.38165 1.24107 0.85987 0.96905 1.00510 1.17983 0.95603 0.85390 1.05304 1.21204 0.95839 0.96111 0.99132 1.21321 1.00500 0.91794 1.00223 1.21669 0.90669 1.01599 0.98258 1.19947 0.97459 0.91334 1.00030 1.19839 0.93593 0.94061 0.99275 1.20562 0.92183 0.97869 1.01156 1.21578 0.96885 0.96368 1.00295 1.21567 0.98881 0.95682 0.99200 1.20540 0.89966 0.96740 1.03600 1.74675 1.23908 0.90345 1.31309 1.85459 1.25989 1.19259 1.72353 0.88208 0.86750 0.82324 0.81591 0.93184 0.91843 0.91544 0.91041 0.88595 0.92619 0.88020 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.42 12.05 21.91 0.26 -41.16 16 2 C 0.03 1.42 5.50 85.42 0.47 1.89 16 3 Si 1.02 35.24 29.56 68.60 2.03 37.27 16 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 6 H -0.25 -8.25 7.11 99.48 0.71 -7.54 16 7 C -0.43 -23.87 9.48 23.32 0.22 -23.65 16 8 H 0.12 6.22 7.85 -2.91 -0.02 6.19 16 9 C 0.27 16.53 7.80 85.07 0.66 17.20 16 10 N -0.63 -37.78 11.27 -305.10 -3.44 -41.22 16 11 C 0.20 10.98 7.60 137.45 1.04 12.03 16 12 C -0.04 -1.89 5.88 -19.95 -0.12 -2.00 16 13 C -0.10 -4.03 9.69 22.42 0.22 -3.81 16 14 C -0.12 -3.40 10.04 22.17 0.22 -3.17 16 15 C -0.10 -2.52 9.60 22.40 0.22 -2.31 16 16 C -0.09 -2.52 5.74 -19.88 -0.11 -2.63 16 17 C -0.07 -2.55 5.76 -19.66 -0.11 -2.66 16 18 C -0.08 -3.17 4.31 29.73 0.13 -3.04 16 19 C -0.11 -3.19 5.98 30.62 0.18 -3.01 16 20 C -0.12 -2.47 5.98 30.61 0.18 -2.29 16 21 C -0.07 -1.42 5.67 29.74 0.17 -1.25 16 22 N -0.47 -27.42 8.62 -56.08 -0.48 -27.91 16 23 O 0.01 0.76 9.72 64.32 0.62 1.38 16 24 H 0.31 13.91 8.29 -92.71 -0.77 13.14 16 25 H 0.11 4.75 7.84 -2.91 -0.02 4.73 16 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.17 2.50 8.05 -2.91 -0.02 2.47 16 28 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 29 H 0.06 3.00 5.80 -2.39 -0.01 2.98 16 30 H 0.07 1.78 8.10 -2.38 -0.02 1.76 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 34 H 0.10 1.46 8.12 -2.39 -0.02 1.44 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.25 294.34 3.48 -68.77 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 1.11 Total: 21.58 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.37 Total: -18.72 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.66 Total: -110.28 kcal Atomic # 8 Polarization: 0.76 SS G_CDS: 0.62 Total: 1.38 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -72.25 3.48 -68.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247385813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.523 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds