Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35850 * 117.00112 * 2 1 4 4 C 1.38563 * 120.11922 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.06619 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.30871 * 0.02562 * 5 4 3 7 7 C 1.38000 * 120.24277 * 359.69640 * 6 5 4 8 8 C 1.39341 * 119.92606 * 0.55663 * 7 6 5 9 9 C 1.48267 * 120.15389 * 179.74234 * 8 7 6 10 10 C 1.39464 * 120.05355 * 129.97188 * 9 8 7 11 11 C 1.37838 * 119.94081 * 180.29697 * 10 9 8 12 12 C 1.38992 * 120.05711 * 359.45681 * 11 10 9 13 13 O 1.35706 * 119.94778 * 180.24591 * 12 11 10 14 14 C 1.34816 * 116.99842 * 354.45609 * 13 12 11 15 15 H 1.08001 * 119.99872 * 5.05572 * 14 13 12 16 16 C 1.38635 * 119.99928 * 185.04722 * 14 13 12 17 17 N 1.31566 * 119.99810 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00092 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47284 * 89.99687 * 18 16 14 20 20 H 1.48504 * 109.46733 * 209.99544 * 18 16 14 21 21 H 1.48494 * 109.46950 * 329.99245 * 18 16 14 22 22 C 1.39002 * 120.11033 * 0.27685 * 12 11 10 23 23 C 1.37833 * 120.05612 * 359.97438 * 22 12 11 24 24 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47218 * 300.00584 * 1 2 3 26 26 H 1.08996 * 109.47048 * 60.00200 * 1 2 3 27 27 H 1.08002 * 119.96609 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.84038 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.87779 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.03738 * 180.30091 * 7 6 5 31 31 H 1.07999 * 120.02572 * 0.05530 * 10 9 8 32 32 H 1.08000 * 119.96528 * 179.72690 * 11 10 9 33 33 H 0.97003 * 119.99943 * 180.02562 * 17 16 14 34 34 H 1.07998 * 119.97640 * 180.02562 * 22 12 11 35 35 H 1.07997 * 120.03036 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2935 2.3741 -0.0005 5 6 1.9221 3.6049 -0.0011 6 6 3.3038 3.6835 -0.0016 7 6 4.0654 2.5327 0.0047 8 6 3.4421 1.2865 -0.0001 9 6 4.2555 0.0469 0.0009 10 6 3.9866 -0.9642 0.9231 11 6 4.7482 -2.1131 0.9259 12 6 5.7761 -2.2692 0.0034 13 8 6.5213 -3.4034 0.0050 14 6 6.2894 -4.2866 0.9968 15 1 5.4840 -4.1149 1.6955 16 6 7.0849 -5.4154 1.1197 17 7 6.8589 -6.2771 2.0878 18 14 8.4783 -5.7121 -0.0885 19 1 9.7217 -5.0839 0.4258 20 1 8.6916 -7.1730 -0.2489 21 1 8.1293 -5.1156 -1.4028 22 6 6.0425 -1.2653 -0.9203 23 6 5.2872 -0.1123 -0.9239 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2149 2.3192 -0.0005 28 1 1.3323 4.5096 -0.0019 29 1 3.7878 4.6490 -0.0024 30 1 5.1434 2.5979 0.0092 31 1 3.1849 -0.8454 1.6368 32 1 4.5431 -2.8944 1.6427 33 1 7.4157 -7.0667 2.1741 34 1 6.8414 -1.3890 -1.6364 35 1 5.4948 0.6676 -1.6415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250540274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = -12.630945 kcal Electronic energy + Delta-G solvation = -19378.696103 eV Core-core repulsion = 16307.890389 eV Total energy + Delta-G solvation = -3070.805714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17552 -38.96428 -37.36760 -36.39552 -32.50245 -31.72403 -30.38266 -29.93958 -28.11140 -27.10396 -25.25380 -22.68913 -22.39812 -21.47175 -20.44170 -18.05613 -17.84307 -17.24381 -16.19104 -15.82718 -15.67179 -14.70946 -14.62911 -14.17376 -13.94929 -13.78379 -13.63448 -13.48223 -12.76846 -12.63463 -12.32551 -12.21762 -12.08807 -11.73102 -11.45736 -11.22601 -11.08537 -10.75925 -10.68171 -10.53794 -10.13138 -9.39864 -9.00626 -8.75776 -8.23166 -8.16872 -7.10984 -6.41840 -4.07489 1.24520 1.48903 2.19871 2.34127 3.22444 3.26124 3.36498 3.40905 3.83747 4.23891 4.52658 4.78168 4.87271 4.89299 5.05799 5.09966 5.10200 5.12484 5.37655 5.44502 5.47346 5.66829 5.69871 5.74295 6.01852 6.17506 6.22479 6.35831 6.45484 6.52138 6.63670 6.81083 6.86361 7.08558 7.26586 7.34628 7.51476 7.62549 7.81686 8.04240 8.93342 9.55954 10.65658 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.004180 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.732064 B = 6697.086949 C = 7247.882557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.096 4.096 6 C -0.157 4.157 7 C -0.081 4.081 8 C -0.042 4.042 9 C -0.140 4.140 10 C -0.040 4.040 11 C -0.223 4.223 12 C 0.164 3.836 13 O -0.215 6.215 14 C -0.389 4.389 15 H 0.107 0.893 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.195 4.195 23 C -0.061 4.061 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.279 0.721 34 H 0.118 0.882 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 16.418 -4.362 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.082 3.918 4 C -0.228 4.228 5 C -0.114 4.114 6 C -0.175 4.175 7 C -0.099 4.099 8 C -0.043 4.043 9 C -0.141 4.141 10 C -0.058 4.058 11 C -0.242 4.242 12 C 0.111 3.889 13 O -0.120 6.120 14 C -0.464 4.464 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.214 4.214 23 C -0.079 4.079 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.569 15.896 -4.401 19.069 hybrid contribution 0.149 -0.132 -0.264 0.331 sum -9.420 15.764 -4.665 18.948 Atomic orbital electron populations 1.23041 0.79134 1.03886 1.00829 1.86221 1.20537 1.26456 1.88267 1.19120 0.91728 0.84237 0.96693 1.21124 0.99691 0.92382 1.09631 1.20857 0.94663 0.96643 0.99225 1.20950 0.93812 0.98209 1.04507 1.21131 0.99978 0.90659 0.98166 1.18231 0.89229 0.93629 1.03167 1.18093 1.00032 0.94572 1.01391 1.20765 0.96752 0.91967 0.96350 1.21202 0.99449 0.99944 1.03622 1.19207 0.90267 0.86102 0.93290 1.83553 1.55327 1.25358 1.47768 1.20794 1.17866 1.00929 1.06856 0.87537 1.24471 0.98119 0.94517 0.96884 1.69653 1.39679 1.11853 1.30459 0.86179 0.81424 0.77307 0.81996 1.19852 1.20776 1.18328 1.20102 1.04331 0.94014 1.02941 1.20636 0.93987 0.96226 0.97039 0.88293 0.92959 0.93001 0.85815 0.86316 0.86180 0.85325 0.87188 0.84860 0.91037 0.86405 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.49 8.82 -19.27 -0.17 -4.66 16 3 C 0.13 1.87 6.59 -38.86 -0.26 1.62 16 4 C -0.21 -2.49 9.03 -39.47 -0.36 -2.85 16 5 C -0.10 -1.04 10.03 -39.54 -0.40 -1.43 16 6 C -0.16 -1.77 10.03 -39.61 -0.40 -2.16 16 7 C -0.08 -1.08 9.51 -39.26 -0.37 -1.45 16 8 C -0.04 -0.66 5.48 -104.76 -0.57 -1.23 16 9 C -0.14 -2.54 5.28 -104.86 -0.55 -3.09 16 10 C -0.04 -0.78 8.77 -39.27 -0.34 -1.13 16 11 C -0.22 -4.97 9.15 -39.45 -0.36 -5.33 16 12 C 0.16 3.85 6.65 -39.02 -0.26 3.59 16 13 O -0.22 -5.74 8.58 0.23 0.00 -5.73 16 14 C -0.39 -11.04 9.94 30.88 0.31 -10.73 16 15 H 0.11 3.09 5.42 -52.49 -0.28 2.80 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.44 13.96 55.48 0.77 -24.67 16 18 Si 0.91 21.72 28.62 -169.99 -4.86 16.86 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.19 -3.94 9.98 -39.45 -0.39 -4.33 16 23 C -0.06 -1.08 9.51 -39.27 -0.37 -1.45 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.12 1.17 6.30 -52.49 -0.33 0.84 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.55 8.04 -52.49 -0.42 1.13 16 31 H 0.11 2.00 7.66 -52.49 -0.40 1.60 16 32 H 0.13 3.10 5.62 -52.49 -0.30 2.81 16 33 H 0.28 7.46 8.31 -40.82 -0.34 7.13 16 34 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.11 1.69 8.04 -52.49 -0.42 1.27 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -30.73 303.60 -6.90 -37.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.78 Total: 3.05 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -3.44 Total: -27.05 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.77 Total: -24.67 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.17 Total: -10.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.73 -6.90 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250540274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.996 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds