Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35850 * 117.00112 * 2 1 4 4 C 1.38563 * 120.11922 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.06619 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.30871 * 0.02562 * 5 4 3 7 7 C 1.38000 * 120.24277 * 359.69640 * 6 5 4 8 8 C 1.39341 * 119.92606 * 0.55663 * 7 6 5 9 9 C 1.48267 * 120.15389 * 179.74234 * 8 7 6 10 10 C 1.39464 * 120.05355 * 129.97188 * 9 8 7 11 11 C 1.37838 * 119.94081 * 180.29697 * 10 9 8 12 12 C 1.38992 * 120.05711 * 359.45681 * 11 10 9 13 13 O 1.35706 * 119.94778 * 180.24591 * 12 11 10 14 14 C 1.34816 * 116.99842 * 354.45609 * 13 12 11 15 15 H 1.08001 * 119.99872 * 5.05572 * 14 13 12 16 16 C 1.38635 * 119.99928 * 185.04722 * 14 13 12 17 17 N 1.31566 * 119.99810 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00092 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47284 * 89.99687 * 18 16 14 20 20 H 1.48504 * 109.46733 * 209.99544 * 18 16 14 21 21 H 1.48494 * 109.46950 * 329.99245 * 18 16 14 22 22 C 1.39002 * 120.11033 * 0.27685 * 12 11 10 23 23 C 1.37833 * 120.05612 * 359.97438 * 22 12 11 24 24 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47218 * 300.00584 * 1 2 3 26 26 H 1.08996 * 109.47048 * 60.00200 * 1 2 3 27 27 H 1.08002 * 119.96609 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.84038 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.87779 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.03738 * 180.30091 * 7 6 5 31 31 H 1.07999 * 120.02572 * 0.05530 * 10 9 8 32 32 H 1.08000 * 119.96528 * 179.72690 * 11 10 9 33 33 H 0.97003 * 119.99943 * 180.02562 * 17 16 14 34 34 H 1.07998 * 119.97640 * 180.02562 * 22 12 11 35 35 H 1.07997 * 120.03036 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2935 2.3741 -0.0005 5 6 1.9221 3.6049 -0.0011 6 6 3.3038 3.6835 -0.0016 7 6 4.0654 2.5327 0.0047 8 6 3.4421 1.2865 -0.0001 9 6 4.2555 0.0469 0.0009 10 6 3.9866 -0.9642 0.9231 11 6 4.7482 -2.1131 0.9259 12 6 5.7761 -2.2692 0.0034 13 8 6.5213 -3.4034 0.0050 14 6 6.2894 -4.2866 0.9968 15 1 5.4840 -4.1149 1.6955 16 6 7.0849 -5.4154 1.1197 17 7 6.8589 -6.2771 2.0878 18 14 8.4783 -5.7121 -0.0885 19 1 9.7217 -5.0839 0.4258 20 1 8.6916 -7.1730 -0.2489 21 1 8.1293 -5.1156 -1.4028 22 6 6.0425 -1.2653 -0.9203 23 6 5.2872 -0.1123 -0.9239 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2149 2.3192 -0.0005 28 1 1.3323 4.5096 -0.0019 29 1 3.7878 4.6490 -0.0024 30 1 5.1434 2.5979 0.0092 31 1 3.1849 -0.8454 1.6368 32 1 4.5431 -2.8944 1.6427 33 1 7.4157 -7.0667 2.1741 34 1 6.8414 -1.3890 -1.6364 35 1 5.4948 0.6676 -1.6415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250540274.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = -30.025440 kcal Electronic energy + Delta-G solvation = -19379.450385 eV Core-core repulsion = 16307.890389 eV Total energy + Delta-G solvation = -3071.559996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30980 -40.59741 -38.56919 -37.84021 -34.50921 -33.03453 -31.92043 -30.97549 -29.48528 -28.03189 -27.18039 -23.98361 -23.81848 -22.65422 -21.86565 -19.79188 -19.25863 -18.85509 -17.33414 -16.95800 -16.68159 -16.38524 -15.88303 -15.71016 -15.59580 -15.27974 -15.00835 -14.54280 -14.31438 -14.19599 -14.11344 -13.51042 -13.19412 -13.06680 -12.71599 -12.59938 -12.50894 -12.21738 -12.00348 -11.94434 -11.59302 -11.31909 -10.92742 -9.96046 -9.84496 -9.28531 -8.64510 -8.50663 -6.23114 0.11842 0.53168 0.56876 0.87194 1.31641 1.36376 1.52708 2.28312 2.46347 2.71327 2.89824 3.05255 3.16251 3.76573 3.99862 4.08804 4.13163 4.18001 4.32260 4.39996 4.47386 4.52646 4.55894 4.70471 4.72864 4.77662 4.90643 5.03085 5.20721 5.31566 5.42449 5.48027 5.57887 5.65233 5.73392 5.80615 5.88077 5.95331 6.19986 6.56094 6.83216 7.56365 8.60980 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.032523 B = 0.004180 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.732064 B = 6697.086949 C = 7247.882557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.082 4.082 8 C -0.085 4.085 9 C -0.112 4.112 10 C -0.048 4.048 11 C -0.235 4.235 12 C 0.123 3.877 13 O -0.241 6.241 14 C -0.402 4.402 15 H 0.079 0.921 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.972 3.028 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.188 4.188 23 C -0.057 4.057 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.285 0.715 34 H 0.136 0.864 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 20.272 -6.060 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.174 4.174 7 C -0.100 4.100 8 C -0.085 4.085 9 C -0.113 4.113 10 C -0.066 4.066 11 C -0.255 4.255 12 C 0.074 3.926 13 O -0.148 6.148 14 C -0.478 4.478 15 H 0.097 0.903 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.207 4.207 23 C -0.075 4.075 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.376 19.794 -6.102 23.167 hybrid contribution 0.073 -0.895 0.253 0.933 sum -10.303 18.899 -5.849 22.306 Atomic orbital electron populations 1.23298 0.76940 1.04973 1.02369 1.86164 1.23031 1.27327 1.88471 1.19338 0.91664 0.85113 0.97056 1.21444 1.00945 0.91811 1.08761 1.21359 0.94929 0.97487 0.96400 1.21324 0.94152 0.98724 1.03174 1.21311 1.00765 0.90396 0.97489 1.18251 0.89803 0.93166 1.07319 1.18503 0.98932 0.94796 0.99028 1.20880 0.96743 0.91665 0.97355 1.21166 1.00270 1.00573 1.03453 1.19703 0.91062 0.86615 0.95195 1.83498 1.57015 1.26501 1.47805 1.20718 1.17664 1.02074 1.07357 0.90328 1.25300 1.00612 0.94105 0.98749 1.69739 1.41391 1.12790 1.32436 0.85195 0.78251 0.77891 0.79242 1.18906 1.19111 1.18643 1.20439 1.04758 0.93568 1.01923 1.21074 0.93035 0.96083 0.97258 0.87668 0.91383 0.91321 0.83399 0.82815 0.83147 0.84418 0.86328 0.87355 0.90511 0.84655 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.61 8.82 -91.86 -0.81 -10.42 16 3 C 0.11 3.07 6.59 22.74 0.15 3.22 16 4 C -0.21 -4.19 9.03 22.34 0.20 -3.99 16 5 C -0.08 -1.39 10.03 22.30 0.22 -1.16 16 6 C -0.16 -2.76 10.03 22.25 0.22 -2.53 16 7 C -0.08 -1.88 9.51 22.48 0.21 -1.67 16 8 C -0.08 -2.47 5.48 -19.96 -0.11 -2.58 16 9 C -0.11 -3.94 5.28 -20.02 -0.11 -4.05 16 10 C -0.05 -1.94 8.77 22.47 0.20 -1.74 16 11 C -0.24 -11.18 9.15 22.36 0.20 -10.97 16 12 C 0.12 6.05 6.65 22.63 0.15 6.21 16 13 O -0.24 -13.46 8.58 -22.11 -0.19 -13.65 16 14 C -0.40 -24.34 9.94 67.91 0.68 -23.66 16 15 H 0.08 5.02 5.42 -2.91 -0.02 5.00 16 16 C 0.01 0.63 5.49 84.83 0.47 1.10 16 17 N -0.92 -56.00 13.96 21.61 0.30 -55.70 16 18 Si 0.97 46.02 28.62 68.60 1.96 47.98 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.19 -7.51 9.98 22.36 0.22 -7.29 16 23 C -0.06 -1.91 9.51 22.47 0.21 -1.70 16 24 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 0.98 7.66 -2.38 -0.02 0.97 16 26 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 27 H 0.15 2.14 6.30 -2.91 -0.02 2.12 16 28 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 29 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.14 2.83 8.04 -2.91 -0.02 2.80 16 31 H 0.12 4.46 7.66 -2.91 -0.02 4.44 16 32 H 0.11 5.60 5.62 -2.91 -0.02 5.59 16 33 H 0.29 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 35 H 0.15 3.97 8.04 -2.91 -0.02 3.95 16 Total: -1.00 -70.96 303.60 6.41 -64.55 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.10 Total: 16.63 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 4.04 Total: -49.38 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.00 Total: -24.08 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.96 Total: 47.98 kcal Total: -70.96 6.41 -64.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250540274.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.524 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds