Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48497 * 109.47341 * 270.00764 * 3 2 1 5 5 H 1.48499 * 109.46822 * 30.00527 * 3 2 1 6 6 H 1.48496 * 109.47019 * 150.00406 * 3 2 1 7 7 C 1.40117 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99977 * 190.43955 * 7 2 1 9 9 C 1.40711 * 119.99841 * 10.44654 * 7 2 1 10 10 C 1.40891 * 120.62730 * 30.70136 * 9 7 2 11 11 C 1.36295 * 119.95643 * 180.02562 * 10 9 7 12 12 C 1.38840 * 121.35091 * 359.95449 * 11 10 9 13 13 C 1.37842 * 121.30858 * 0.02623 * 12 11 10 14 14 C 1.39611 * 119.91768 * 359.97438 * 13 12 11 15 15 C 1.47123 * 120.64303 * 179.72983 * 14 13 12 16 16 N 1.31618 * 126.40015 * 180.02562 * 15 14 13 17 17 N 1.28663 * 109.19000 * 179.97438 * 16 15 14 18 18 C 1.30600 * 109.53780 * 359.97438 * 17 16 15 19 19 C 1.50695 * 126.16013 * 180.02562 * 18 17 16 20 20 C 1.53785 * 113.61360 * 37.47202 * 19 18 17 21 21 C 1.53781 * 87.08163 * 220.02014 * 20 19 18 22 22 C 1.53782 * 113.61274 * 299.97784 * 19 18 17 23 23 O 1.34359 * 107.68201 * 359.73795 * 18 17 16 24 24 H 0.97002 * 119.99891 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.02405 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.32604 * 179.97438 * 11 10 9 27 27 H 1.08005 * 119.34617 * 180.02562 * 12 11 10 28 28 H 1.08005 * 120.03966 * 180.02562 * 13 12 11 29 29 H 1.08999 * 112.85303 * 168.78049 * 19 18 17 30 30 H 1.09001 * 113.60972 * 334.56647 * 20 19 18 31 31 H 1.09000 * 113.61441 * 105.46967 * 20 19 18 32 32 H 1.08996 * 113.61443 * 270.88350 * 21 20 19 33 33 H 1.08997 * 113.61482 * 139.98191 * 21 20 19 34 34 H 1.09005 * 113.61213 * 254.52437 * 22 19 18 35 35 H 1.08997 * 113.62015 * 25.42875 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4391 2.6526 0.7002 6 1 3.5391 1.4400 0.6999 7 6 2.0080 -1.2135 -0.0005 8 1 3.0745 -1.2214 0.1689 9 6 1.3218 -2.4218 -0.2220 10 6 0.1738 -2.4562 -1.0380 11 6 -0.4806 -3.6341 -1.2429 12 6 -0.0399 -4.8157 -0.6623 13 6 1.0771 -4.8441 0.1449 14 6 1.7885 -3.6683 0.3910 15 6 2.9794 -3.6792 1.2548 16 7 3.7307 -2.6432 1.5623 17 7 4.6825 -3.0266 2.3386 18 6 4.5782 -4.3100 2.5565 19 6 5.4964 -5.1441 3.4121 20 6 5.9858 -4.4202 4.6775 21 6 7.3584 -5.0640 4.4198 22 6 6.9588 -5.1351 2.9365 23 8 3.5012 -4.7517 1.8855 24 1 -0.4850 0.8401 0.0004 25 1 -0.1875 -1.5498 -1.5008 26 1 -1.3599 -3.6486 -1.8699 27 1 -0.5829 -5.7309 -0.8469 28 1 1.4021 -5.7750 0.5857 29 1 5.1055 -6.1436 3.6028 30 1 5.9888 -3.3341 4.5855 31 1 5.5056 -4.7672 5.5924 32 1 7.4769 -6.0414 4.8874 33 1 8.1974 -4.3960 4.6144 34 1 7.2641 -6.0594 2.4459 35 1 7.2278 -4.2445 2.3686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255245998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = 70.942361 kcal Electronic energy + Delta-G solvation = -19763.736432 eV Core-core repulsion = 16728.847480 eV Total energy + Delta-G solvation = -3034.888952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.00263 -38.64983 -37.42326 -35.09753 -33.92196 -31.59099 -29.80687 -28.97415 -26.06316 -25.66907 -25.44607 -22.89167 -22.09173 -20.75896 -20.27918 -19.24378 -17.54844 -16.72840 -16.28900 -15.87017 -15.38866 -15.17686 -14.68513 -14.19890 -13.33061 -12.83051 -12.76347 -12.56061 -12.47854 -12.42373 -11.87069 -11.51488 -11.34804 -11.24326 -11.10328 -11.06328 -10.92196 -10.56933 -10.52020 -10.47853 -9.87329 -9.77628 -9.58629 -9.42237 -9.06181 -7.64705 -7.27456 -7.00773 -4.58599 1.65688 2.63300 2.81357 3.01640 3.08796 3.15538 3.17696 3.67108 3.83701 4.44487 4.47487 4.60911 4.69667 4.84150 4.95382 5.40613 5.42807 5.59562 5.65633 5.78698 5.84258 5.92302 5.95820 6.05284 6.19403 6.26077 6.40997 6.46955 6.52747 6.69888 6.84644 6.91360 7.09125 7.33445 7.63985 7.81047 7.88348 8.02288 8.45912 8.56595 8.67673 9.40279 9.87434 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.006061 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.982503 B = 4618.645980 C = 5996.968596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.398 4.398 8 H 0.115 0.885 9 C 0.144 3.856 10 C -0.152 4.152 11 C -0.086 4.086 12 C -0.248 4.248 13 C -0.042 4.042 14 C -0.192 4.192 15 C 0.265 3.735 16 N -0.307 5.307 17 N -0.283 5.283 18 C 0.108 3.892 19 C -0.011 4.011 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.125 4.125 23 O -0.242 6.242 24 H 0.288 0.712 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -5.910 4.245 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.152 4.152 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.174 1.174 7 C -0.426 4.426 8 H 0.133 0.867 9 C 0.139 3.861 10 C -0.171 4.171 11 C -0.105 4.105 12 C -0.268 4.268 13 C -0.062 4.062 14 C -0.197 4.197 15 C 0.065 3.935 16 N -0.154 5.154 17 N -0.131 5.131 18 C -0.103 4.103 19 C -0.031 4.031 20 C -0.161 4.161 21 C -0.177 4.177 22 C -0.163 4.163 23 O -0.125 6.125 24 H 0.099 0.901 25 H 0.142 0.858 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.316 -4.504 4.329 9.620 hybrid contribution -0.437 -0.604 -0.002 0.745 sum 6.879 -5.107 4.327 9.598 Atomic orbital electron populations 1.69771 1.07970 1.30349 1.31436 1.26232 0.94881 1.02334 0.91780 0.86079 0.81103 0.78962 0.79624 1.18930 1.19991 1.17447 1.20378 0.98191 0.89555 1.34466 0.86691 1.18431 0.90373 0.89966 0.87318 1.21048 0.97995 0.96997 1.01044 1.20485 0.98136 0.93315 0.98609 1.20133 1.01150 0.97239 1.08235 1.20571 0.94328 0.95146 0.96146 1.18132 0.96734 0.96361 1.08469 1.25631 0.95831 0.78721 0.93312 1.75115 1.03027 1.23247 1.13969 1.74205 1.18086 1.08636 1.12157 1.27231 0.89893 0.92716 1.00467 1.20942 0.90989 0.97395 0.93815 1.23008 0.95719 1.01612 0.95804 1.22786 0.97502 1.01168 0.96232 1.23017 0.93024 1.03187 0.97109 1.84758 1.36639 1.39693 1.51366 0.90097 0.85787 0.88917 0.88831 0.88610 0.87186 0.88433 0.90955 0.89970 0.90761 0.90914 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.85 10.98 55.56 0.61 -18.24 16 2 C 0.07 1.68 5.25 -17.31 -0.09 1.59 16 3 Si 0.92 18.65 29.57 -169.99 -5.03 13.62 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.25 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.40 -10.45 8.10 -37.94 -0.31 -10.76 16 8 H 0.12 3.10 5.79 -52.49 -0.30 2.80 16 9 C 0.14 3.78 5.69 -104.62 -0.60 3.18 16 10 C -0.15 -3.73 8.60 -39.28 -0.34 -4.07 16 11 C -0.09 -1.91 9.91 -40.06 -0.40 -2.30 16 12 C -0.25 -5.34 9.98 -39.50 -0.39 -5.73 16 13 C -0.04 -0.95 9.74 -39.21 -0.38 -1.34 16 14 C -0.19 -4.85 6.08 -102.44 -0.62 -5.48 16 15 C 0.26 6.58 7.92 -14.04 -0.11 6.47 16 16 N -0.31 -7.81 9.33 31.98 0.30 -7.51 16 17 N -0.28 -6.39 11.83 32.60 0.39 -6.00 16 18 C 0.11 2.12 7.53 -12.80 -0.10 2.03 16 19 C -0.01 -0.16 4.29 -90.96 -0.39 -0.55 16 20 C -0.12 -1.47 7.62 -25.92 -0.20 -1.67 16 21 C -0.14 -1.32 8.08 -25.92 -0.21 -1.53 16 22 C -0.13 -1.46 7.63 -25.92 -0.20 -1.66 16 23 O -0.24 -5.36 10.70 3.83 0.04 -5.32 16 24 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.12 3.06 6.39 -52.49 -0.34 2.72 16 26 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.10 1.97 7.96 -52.48 -0.42 1.55 16 29 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.34 7.77 -51.93 -0.40 0.94 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 LS Contribution 301.26 15.07 4.54 4.54 Total: -1.00 -28.49 301.26 -7.46 -35.95 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.97 Total: 4.78 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -4.33 Total: -21.81 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 1.29 Total: -31.76 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.04 Total: -5.32 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.49 -7.46 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255245998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.892 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds