Wall clock time and date at job start Mon Mar 30 2020 01:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30379 * 126.18629 * 89.68367 * 10 9 7 12 12 N 1.28666 * 109.52383 * 179.88358 * 11 10 9 13 13 C 1.31240 * 109.24536 * 0.39189 * 12 11 10 14 14 C 1.47851 * 126.37611 * 179.78703 * 13 12 11 15 15 C 1.39579 * 120.18273 * 179.97438 * 14 13 12 16 16 C 1.37814 * 119.78718 * 179.97438 * 15 14 13 17 17 C 1.38661 * 120.40854 * 0.02562 * 16 15 14 18 18 C 1.38363 * 120.07576 * 359.97438 * 17 16 15 19 19 C 1.38247 * 119.99797 * 359.74011 * 18 17 16 20 20 C 1.51402 * 109.74515 * 179.97438 * 18 17 16 21 21 C 1.54327 * 105.17028 * 17.22780 * 20 18 17 22 22 C 1.51426 * 130.21963 * 179.97438 * 17 16 15 23 23 O 1.34406 * 126.18368 * 269.99874 * 10 9 7 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 26 26 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 27 27 H 1.07995 * 120.10568 * 359.94606 * 15 14 13 28 28 H 1.07999 * 119.79151 * 180.02562 * 16 15 14 29 29 H 1.07998 * 119.94997 * 180.27209 * 19 18 17 30 30 H 1.09007 * 110.30076 * 136.15103 * 20 18 17 31 31 H 1.08998 * 110.30625 * 258.20080 * 20 18 17 32 32 H 1.09002 * 110.82060 * 91.81600 * 21 20 18 33 33 H 1.08999 * 110.81828 * 215.16043 * 21 20 18 34 34 H 1.09006 * 110.29469 * 281.72239 * 22 17 16 35 35 H 1.08997 * 110.30052 * 43.87001 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7389 -4.2283 1.0370 12 7 3.5350 -5.1674 0.6630 13 6 3.5681 -5.2097 -0.6483 14 6 4.3633 -6.1420 -1.4758 15 6 4.3001 -6.0727 -2.8684 16 6 5.0452 -6.9453 -3.6317 17 6 5.8567 -7.8918 -3.0248 18 6 5.9235 -7.9654 -1.6448 19 6 5.1849 -7.0911 -0.8694 20 6 6.8716 -9.0732 -1.2370 21 6 7.7065 -9.3753 -2.4992 22 6 6.7562 -8.9453 -3.6365 23 8 2.7417 -4.2454 -1.1002 24 1 -0.4849 0.8401 0.0041 25 1 0.6280 -2.5591 0.8866 26 1 0.6206 -2.5548 -0.8933 27 1 3.6691 -5.3380 -3.3462 28 1 4.9967 -6.8916 -4.7093 29 1 5.2411 -7.1464 0.2077 30 1 7.5189 -8.7378 -0.4266 31 1 6.3115 -9.9570 -0.9316 32 1 8.6194 -8.7798 -2.5116 33 1 7.9384 -10.4383 -2.5650 34 1 6.1652 -9.7956 -3.9770 35 1 7.3245 -8.5226 -4.4649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258160558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:51 Heat of formation + Delta-G solvation = 24.267764 kcal Electronic energy + Delta-G solvation = -19029.038286 eV Core-core repulsion = 15992.125371 eV Total energy + Delta-G solvation = -3036.912915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.15437 -41.08246 -37.22121 -36.99132 -35.74373 -33.57749 -32.46261 -30.83496 -29.32355 -28.10985 -25.97731 -25.10763 -23.53988 -22.88801 -21.79742 -21.64462 -19.03939 -18.45624 -18.00031 -17.20468 -16.89291 -16.53758 -16.42373 -16.04258 -15.16586 -14.67260 -14.49840 -14.32452 -13.86934 -13.85674 -13.68846 -13.51524 -13.12171 -12.91178 -12.84174 -12.70001 -12.51958 -12.30617 -12.07548 -12.00828 -12.00290 -11.78050 -11.70202 -10.82523 -10.73529 -9.87767 -9.34753 -8.36609 -6.52008 -0.57062 0.28313 0.63299 1.20515 1.37148 1.41300 1.42341 1.51472 2.34248 2.63263 2.81262 2.97013 3.37064 3.48309 3.61151 3.92903 3.97445 4.14841 4.20862 4.24244 4.31869 4.46244 4.52925 4.66614 4.70718 4.89506 4.97484 4.98724 5.00098 5.10073 5.12379 5.19091 5.31649 5.32924 5.42074 5.51200 5.52336 5.79724 5.82771 6.51685 7.16953 7.23702 8.73739 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036364 B = 0.003486 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.803625 B = 8031.249293 C = 8241.159485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.051 0.949 9 C 0.114 3.886 10 C 0.212 3.788 11 N -0.331 5.331 12 N -0.303 5.303 13 C 0.184 3.816 14 C -0.042 4.042 15 C -0.093 4.093 16 C -0.104 4.104 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.068 4.068 20 C -0.083 4.083 21 C -0.115 4.115 22 C -0.082 4.082 23 O -0.227 6.227 24 H 0.275 0.725 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.133 0.867 28 H 0.160 0.840 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.320 -18.892 -10.257 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.069 0.931 9 C 0.076 3.924 10 C 0.003 3.997 11 N -0.177 5.177 12 N -0.149 5.149 13 C -0.025 4.025 14 C -0.044 4.044 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.075 4.075 18 C -0.107 4.107 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.152 4.152 22 C -0.118 4.118 23 O -0.108 6.108 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.177 0.823 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.375 -19.048 -8.970 25.494 hybrid contribution -0.562 1.599 -0.636 1.811 sum 13.813 -17.449 -9.607 24.239 Atomic orbital electron populations 1.70001 1.07351 1.29051 1.48858 1.25794 0.95919 1.02820 0.93372 0.85371 0.78353 0.77465 0.79145 1.19138 1.19486 1.19600 1.21000 0.93000 0.90288 1.54635 0.93107 1.17914 0.89761 0.84599 1.00125 1.29146 0.96570 0.95724 0.78269 1.74332 1.10475 1.06595 1.26336 1.74479 1.16134 1.15063 1.09271 1.26031 0.94270 0.91308 0.90848 1.17233 0.99305 0.95789 0.92080 1.21307 0.99250 0.99570 0.91168 1.20819 0.95798 0.94183 1.01373 1.21357 0.95980 0.95819 0.94355 1.20852 0.98303 0.97231 0.94353 1.20601 0.94380 0.93132 1.00686 1.21194 0.95811 0.95201 0.99797 1.22340 0.97515 1.03281 0.92108 1.21231 0.95818 0.95863 0.98934 1.84842 1.47858 1.39556 1.38514 0.91597 0.92386 0.93281 0.84936 0.82251 0.85428 0.90059 0.88831 0.90500 0.88051 0.88168 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 2 C 0.02 1.22 5.46 84.66 0.46 1.68 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.50 9.09 25.60 0.23 -31.27 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.11 6.14 5.60 29.10 0.16 6.30 16 10 C 0.21 10.74 7.66 88.32 0.68 11.41 16 11 N -0.33 -16.90 12.22 -165.34 -2.02 -18.92 16 12 N -0.30 -13.99 11.92 -166.30 -1.98 -15.98 16 13 C 0.18 7.70 7.99 87.33 0.70 8.40 16 14 C -0.04 -1.37 5.87 -20.13 -0.12 -1.49 16 15 C -0.09 -2.49 9.73 22.49 0.22 -2.27 16 16 C -0.10 -2.03 10.02 22.27 0.22 -1.80 16 17 C -0.07 -1.32 6.14 -19.50 -0.12 -1.44 16 18 C -0.11 -2.22 6.13 -19.61 -0.12 -2.34 16 19 C -0.07 -1.90 9.69 22.56 0.22 -1.68 16 20 C -0.08 -1.11 6.77 30.52 0.21 -0.90 16 21 C -0.12 -0.99 7.08 31.49 0.22 -0.76 16 22 C -0.08 -0.80 6.77 30.53 0.21 -0.60 16 23 O -0.23 -10.49 10.68 -8.37 -0.09 -10.58 16 24 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 26 H 0.05 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.13 3.52 7.94 -2.91 -0.02 3.49 16 28 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.13 3.65 7.86 -2.91 -0.02 3.62 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -67.84 308.00 2.49 -65.35 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.10 Total: 3.60 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 3.17 Total: -16.76 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.72 Total: -86.92 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.09 Total: -10.58 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.84 2.49 -65.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258160558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.613 kcal (2) G-P(sol) polarization free energy of solvation -67.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds