Wall clock time and date at job start Mon Mar 30 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00307 * 2 1 4 4 H 1.48502 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47339 * 300.00203 * 3 2 1 6 6 H 1.48504 * 109.47048 * 59.99609 * 3 2 1 7 7 C 1.39946 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 197.85666 * 7 2 1 9 9 C 1.41391 * 119.99887 * 17.85688 * 7 2 1 10 10 C 1.40717 * 120.24697 * 204.37509 * 9 7 2 11 11 C 1.37612 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24812 * 0.02941 * 11 10 9 13 13 C 1.50705 * 119.74863 * 179.97438 * 12 11 10 14 14 N 1.46507 * 109.46899 * 89.99760 * 13 12 11 15 15 C 1.34772 * 119.99624 * 179.97438 * 14 13 12 16 16 O 1.21625 * 120.00224 * 0.02562 * 15 14 13 17 17 C 1.47265 * 119.99524 * 180.02562 * 15 14 13 18 18 C 1.46691 * 126.93778 * 179.97438 * 17 15 14 19 19 C 1.34485 * 106.33068 * 179.97438 * 18 17 15 20 20 N 1.36447 * 108.85830 * 0.02562 * 19 18 17 21 21 H 0.97001 * 124.85402 * 180.02562 * 20 19 18 22 22 C 1.34661 * 110.29863 * 0.26248 * 20 19 18 23 23 C 1.38633 * 120.50373 * 0.24823 * 12 11 10 24 24 C 1.37617 * 120.24168 * 359.44860 * 23 12 11 25 25 H 0.97006 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.12317 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.87463 * 180.02562 * 11 10 9 28 28 H 1.09007 * 109.47222 * 330.00134 * 13 12 11 29 29 H 1.08997 * 109.47401 * 209.99931 * 13 12 11 30 30 H 0.97001 * 119.99949 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.83745 * 0.02562 * 18 17 15 32 32 H 1.08002 * 125.57266 * 179.97438 * 19 18 17 33 33 H 1.07993 * 125.80509 * 179.73748 * 22 20 19 34 34 H 1.07996 * 119.87500 * 179.70531 * 23 12 11 35 35 H 1.08006 * 120.12551 * 180.27582 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4071 -0.3744 10 6 1.8257 -3.6499 0.0852 11 6 1.1798 -4.8067 -0.2865 12 6 0.0667 -4.7510 -1.1111 13 6 -0.6318 -6.0249 -1.5117 14 7 -1.6749 -6.3387 -0.5320 15 6 -2.4349 -7.4409 -0.6867 16 8 -2.2546 -8.1752 -1.6393 17 6 -3.4839 -7.7560 0.2978 18 6 -4.3935 -8.9067 0.2790 19 6 -5.1760 -8.7880 1.3663 20 7 -4.8187 -7.6599 2.0457 21 1 -5.2339 -7.3523 2.8666 22 6 -3.8108 -7.0318 1.4110 23 6 -0.4055 -3.5327 -1.5745 24 6 0.2210 -2.3627 -1.2105 25 1 -0.4850 0.8401 -0.0004 26 1 2.6930 -3.6956 0.7273 27 1 1.5414 -5.7616 0.0654 28 1 0.0911 -6.8401 -1.5464 29 1 -1.0836 -5.8977 -2.4954 30 1 -1.8190 -5.7528 0.2276 31 1 -4.4275 -9.6932 -0.4604 32 1 -5.9597 -9.4731 1.6542 33 1 -3.3385 -6.1140 1.7288 34 1 -1.2706 -3.5014 -2.2202 35 1 -0.1511 -1.4143 -1.5691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299898052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:41 Heat of formation + Delta-G solvation = 17.432034 kcal Electronic energy + Delta-G solvation = -18901.279297 eV Core-core repulsion = 15864.069963 eV Total energy + Delta-G solvation = -3037.209334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08130 -38.77387 -37.55424 -34.60128 -33.36381 -31.16775 -30.31351 -29.37998 -29.07792 -26.74115 -23.97543 -22.29463 -21.05867 -20.65088 -20.06949 -19.29741 -18.66304 -17.38362 -16.11499 -15.45393 -15.20145 -14.86767 -14.17124 -14.10386 -13.93679 -13.70800 -13.39435 -13.26175 -12.73478 -12.50978 -12.11566 -12.01994 -11.87327 -11.66103 -11.16335 -11.02640 -10.70062 -10.43787 -9.76502 -9.56412 -9.46352 -9.21210 -8.88018 -8.56320 -8.33426 -7.55821 -7.43589 -6.86857 -4.45778 1.85100 2.43780 2.59208 2.99253 3.01864 3.04716 3.08041 3.15601 3.85240 3.87509 3.91243 4.56448 4.90590 5.01602 5.19272 5.52244 5.61553 5.81563 5.97594 5.99110 6.02462 6.27232 6.36719 6.40908 6.67812 6.85108 6.88032 6.97692 6.99806 7.20211 7.28013 7.34110 7.52614 7.73853 7.96740 8.03491 8.11551 8.20609 8.54859 8.74837 8.79686 8.87712 10.07177 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.003548 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.063899 B = 7890.458746 C = 8411.759569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.071 4.071 12 C -0.243 4.243 13 C 0.185 3.815 14 N -0.717 5.717 15 C 0.580 3.420 16 O -0.559 6.559 17 C -0.224 4.224 18 C -0.144 4.144 19 C -0.028 4.028 20 N -0.553 5.553 21 H 0.416 0.584 22 C 0.045 3.955 23 C -0.082 4.082 24 C -0.169 4.169 25 H 0.281 0.719 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.397 0.603 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.088 0.912 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -7.957 5.130 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.244 4.244 13 C 0.064 3.936 14 N -0.368 5.368 15 C 0.368 3.632 16 O -0.439 6.439 17 C -0.235 4.235 18 C -0.169 4.169 19 C -0.155 4.155 20 N -0.148 5.148 21 H 0.252 0.748 22 C -0.091 4.091 23 C -0.101 4.101 24 C -0.188 4.188 25 H 0.092 0.908 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.106 0.894 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.744 -8.296 4.550 12.883 hybrid contribution 0.036 1.290 0.856 1.548 sum -8.708 -7.006 5.406 12.415 Atomic orbital electron populations 1.69824 1.07642 1.29290 1.34596 1.25939 0.94741 1.01454 0.92125 0.86265 0.81070 0.80823 0.78628 1.18322 1.19612 1.19954 1.19684 0.98222 0.91272 1.39606 0.90274 1.17668 0.90900 0.92041 0.88078 1.20976 1.03942 0.92824 1.07176 1.20417 0.95134 0.96513 0.96874 1.19028 1.01957 0.92822 1.10639 1.19928 0.88079 0.94942 0.90695 1.46340 1.36029 1.25483 1.28901 1.17501 0.80467 0.80777 0.84489 1.90722 1.70636 1.50095 1.32430 1.20643 1.03509 1.00254 0.99051 1.21964 0.96830 0.99155 0.98918 1.21769 1.04604 0.92711 0.96464 1.41589 1.29267 1.20905 1.23054 0.74810 1.22046 0.92972 0.99271 0.94812 1.20575 0.98090 0.92557 0.98857 1.21311 0.99538 0.96754 1.01237 0.90809 0.88938 0.89342 0.92459 0.92408 0.76865 0.83632 0.81500 0.80930 0.89356 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.52 10.95 55.55 0.61 -18.92 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.08 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.12 2.96 5.57 -106.83 -0.60 2.37 16 10 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C -0.07 -1.51 9.67 -39.66 -0.38 -1.90 16 12 C -0.24 -5.07 5.27 -104.33 -0.55 -5.62 16 13 C 0.19 3.48 5.79 -5.19 -0.03 3.45 16 14 N -0.72 -12.20 5.54 -62.61 -0.35 -12.54 16 15 C 0.58 10.31 7.81 -12.59 -0.10 10.21 16 16 O -0.56 -11.88 16.97 5.26 0.09 -11.79 16 17 C -0.22 -3.26 6.29 -103.35 -0.65 -3.91 16 18 C -0.14 -1.85 10.97 -37.50 -0.41 -2.26 16 19 C -0.03 -0.26 11.89 -16.82 -0.20 -0.46 16 20 N -0.55 -4.65 5.90 -12.85 -0.08 -4.73 16 21 H 0.42 1.99 8.96 -40.82 -0.37 1.62 16 22 C 0.05 0.50 11.40 -16.84 -0.19 0.30 16 23 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 24 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 25 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 26 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 27 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 29 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.40 6.12 7.41 -40.82 -0.30 5.81 16 31 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.17 1.55 7.45 -52.49 -0.39 1.15 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -30.53 309.93 -8.61 -39.15 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -3.88 Total: 11.89 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -4.64 Total: -20.68 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.19 Total: -36.19 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.53 -8.61 -39.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299898052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.581 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds