Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86798 * 120.00307 * 2 1 4 4 H 1.48502 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47339 * 300.00203 * 3 2 1 6 6 H 1.48504 * 109.47048 * 59.99609 * 3 2 1 7 7 C 1.39946 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 197.85666 * 7 2 1 9 9 C 1.41391 * 119.99887 * 17.85688 * 7 2 1 10 10 C 1.40717 * 120.24697 * 204.37509 * 9 7 2 11 11 C 1.37612 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24812 * 0.02941 * 11 10 9 13 13 C 1.50705 * 119.74863 * 179.97438 * 12 11 10 14 14 N 1.46507 * 109.46899 * 89.99760 * 13 12 11 15 15 C 1.34772 * 119.99624 * 179.97438 * 14 13 12 16 16 O 1.21625 * 120.00224 * 0.02562 * 15 14 13 17 17 C 1.47265 * 119.99524 * 180.02562 * 15 14 13 18 18 C 1.46691 * 126.93778 * 179.97438 * 17 15 14 19 19 C 1.34485 * 106.33068 * 179.97438 * 18 17 15 20 20 N 1.36447 * 108.85830 * 0.02562 * 19 18 17 21 21 H 0.97001 * 124.85402 * 180.02562 * 20 19 18 22 22 C 1.34661 * 110.29863 * 0.26248 * 20 19 18 23 23 C 1.38633 * 120.50373 * 0.24823 * 12 11 10 24 24 C 1.37617 * 120.24168 * 359.44860 * 23 12 11 25 25 H 0.97006 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.12317 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.87463 * 180.02562 * 11 10 9 28 28 H 1.09007 * 109.47222 * 330.00134 * 13 12 11 29 29 H 1.08997 * 109.47401 * 209.99931 * 13 12 11 30 30 H 0.97001 * 119.99949 * 0.02562 * 14 13 12 31 31 H 1.08000 * 126.83745 * 0.02562 * 18 17 15 32 32 H 1.08002 * 125.57266 * 179.97438 * 19 18 17 33 33 H 1.07993 * 125.80509 * 179.73748 * 22 20 19 34 34 H 1.07996 * 119.87500 * 179.70531 * 23 12 11 35 35 H 1.08006 * 120.12551 * 180.27582 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4071 -0.3744 10 6 1.8257 -3.6499 0.0852 11 6 1.1798 -4.8067 -0.2865 12 6 0.0667 -4.7510 -1.1111 13 6 -0.6318 -6.0249 -1.5117 14 7 -1.6749 -6.3387 -0.5320 15 6 -2.4349 -7.4409 -0.6867 16 8 -2.2546 -8.1752 -1.6393 17 6 -3.4839 -7.7560 0.2978 18 6 -4.3935 -8.9067 0.2790 19 6 -5.1760 -8.7880 1.3663 20 7 -4.8187 -7.6599 2.0457 21 1 -5.2339 -7.3523 2.8666 22 6 -3.8108 -7.0318 1.4110 23 6 -0.4055 -3.5327 -1.5745 24 6 0.2210 -2.3627 -1.2105 25 1 -0.4850 0.8401 -0.0004 26 1 2.6930 -3.6956 0.7273 27 1 1.5414 -5.7616 0.0654 28 1 0.0911 -6.8401 -1.5464 29 1 -1.0836 -5.8977 -2.4954 30 1 -1.8190 -5.7528 0.2276 31 1 -4.4275 -9.6932 -0.4604 32 1 -5.9597 -9.4731 1.6542 33 1 -3.3385 -6.1140 1.7288 34 1 -1.2706 -3.5014 -2.2202 35 1 -0.1511 -1.4143 -1.5691 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299898052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = -1.473531 kcal Electronic energy + Delta-G solvation = -18902.099104 eV Core-core repulsion = 15864.069963 eV Total energy + Delta-G solvation = -3038.029141 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96530 -40.21784 -39.27954 -36.26200 -35.03142 -32.44359 -31.63090 -31.16303 -30.15806 -28.35891 -25.59164 -23.56937 -22.88182 -21.84820 -21.44019 -20.50622 -19.56528 -19.23078 -17.38677 -17.15387 -16.67797 -16.26012 -15.77808 -15.42111 -15.40792 -14.79531 -14.74484 -14.45804 -14.18966 -13.82088 -13.70883 -13.54977 -13.41033 -13.01010 -12.81892 -12.70542 -12.47541 -12.08214 -11.50873 -11.28866 -11.11623 -10.93441 -10.08150 -9.67790 -9.39009 -9.27780 -9.26650 -8.66377 -6.35891 0.81083 0.85429 1.14520 1.39764 1.47545 1.54290 1.57999 2.20536 2.35784 2.53509 2.63452 2.84079 3.74900 4.06869 4.11871 4.25355 4.33055 4.41820 4.52960 4.58925 4.67591 4.83967 5.04950 5.05612 5.14475 5.15593 5.36135 5.43780 5.55137 5.69443 5.77267 5.92283 5.97624 6.09517 6.21834 6.36572 6.68597 6.69038 6.78471 6.92682 7.01439 7.39738 8.30232 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.003548 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.063899 B = 7890.458746 C = 8411.759569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.242 4.242 11 C -0.068 4.068 12 C -0.226 4.226 13 C 0.193 3.807 14 N -0.711 5.711 15 C 0.578 3.422 16 O -0.604 6.604 17 C -0.269 4.269 18 C -0.184 4.184 19 C 0.001 3.999 20 N -0.535 5.535 21 H 0.437 0.563 22 C 0.063 3.937 23 C -0.082 4.082 24 C -0.190 4.190 25 H 0.289 0.711 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.406 0.594 31 H 0.135 0.865 32 H 0.209 0.791 33 H 0.194 0.806 34 H 0.103 0.897 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -8.168 6.761 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.262 4.262 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.071 3.929 14 N -0.361 5.361 15 C 0.369 3.631 16 O -0.487 6.487 17 C -0.280 4.280 18 C -0.208 4.208 19 C -0.128 4.128 20 N -0.130 5.130 21 H 0.278 0.722 22 C -0.076 4.076 23 C -0.101 4.101 24 C -0.210 4.210 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.153 0.847 32 H 0.226 0.774 33 H 0.211 0.789 34 H 0.121 0.879 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.942 -8.505 6.229 14.491 hybrid contribution 0.293 1.212 0.386 1.305 sum -9.649 -7.293 6.615 13.786 Atomic orbital electron populations 1.69861 1.08915 1.30612 1.34954 1.26728 0.95493 1.04427 0.91187 0.85187 0.79449 0.76317 0.78956 1.18303 1.19007 1.18940 1.19909 0.98410 0.92538 1.41650 0.90606 1.17991 0.91642 0.93066 0.88854 1.21156 1.04490 0.92950 1.07566 1.20668 0.94727 0.96968 0.96262 1.19189 1.01385 0.93089 1.09127 1.19733 0.88469 0.93748 0.90982 1.46128 1.35556 1.25699 1.28758 1.17993 0.80676 0.79980 0.84495 1.90684 1.72069 1.51491 1.34495 1.20530 1.04437 1.02664 1.00354 1.22096 0.98464 0.99412 1.00855 1.22272 1.03564 0.92460 0.94484 1.41646 1.28016 1.20087 1.23289 0.72200 1.22246 0.92707 0.99161 0.93445 1.20744 0.98276 0.92349 0.98739 1.21251 1.00376 0.96957 1.02385 0.90018 0.88318 0.86749 0.92324 0.92828 0.75794 0.84667 0.77432 0.78908 0.87894 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.11 10.95 21.83 0.24 -40.87 16 2 C 0.04 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.98 36.97 29.59 68.60 2.03 39.00 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.50 -26.00 9.05 23.46 0.21 -25.79 16 8 H 0.08 3.86 7.91 -2.91 -0.02 3.83 16 9 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -11.43 9.80 22.73 0.22 -11.21 16 11 C -0.07 -2.83 9.67 22.22 0.21 -2.61 16 12 C -0.23 -9.26 5.27 -19.67 -0.10 -9.36 16 13 C 0.19 7.12 5.79 85.63 0.50 7.61 16 14 N -0.71 -23.58 5.54 -470.24 -2.60 -26.19 16 15 C 0.58 20.52 7.81 86.62 0.68 21.19 16 16 O -0.60 -26.24 16.97 -4.11 -0.07 -26.31 16 17 C -0.27 -7.57 6.29 -19.04 -0.12 -7.69 16 18 C -0.18 -4.52 10.97 23.62 0.26 -4.27 16 19 C 0.00 0.01 11.89 83.12 0.99 1.00 16 20 N -0.53 -6.91 5.90 -194.56 -1.15 -8.06 16 21 H 0.44 2.14 8.96 -92.71 -0.83 1.31 16 22 C 0.06 1.21 11.40 83.92 0.96 2.17 16 23 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 24 C -0.19 -9.68 8.70 22.73 0.20 -9.48 16 25 H 0.29 13.06 8.30 -92.70 -0.77 12.29 16 26 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 29 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 30 H 0.41 11.92 7.41 -92.71 -0.69 11.23 16 31 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.19 2.84 7.45 -2.91 -0.02 2.82 16 34 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 35 H 0.10 5.42 6.16 -2.91 -0.02 5.40 16 Total: -1.00 -68.39 309.93 2.60 -65.79 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.38 Total: 31.82 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 4.53 Total: -35.19 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -3.51 Total: -75.12 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.07 Total: -26.31 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -68.39 2.60 -65.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299898052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.318 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds