Wall clock time and date at job start Mon Mar 30 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99688 * 2 1 4 4 O 1.20823 * 120.00371 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99702 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46836 * 180.02562 * 5 3 2 7 7 C 1.37093 * 119.99501 * 90.00536 * 6 5 3 8 8 H 1.08010 * 119.99740 * 156.78905 * 7 6 5 9 9 C 1.38949 * 120.00547 * 337.05398 * 7 6 5 10 10 N 1.31412 * 119.99649 * 8.40287 * 9 7 6 11 11 Si 1.86795 * 120.00524 * 188.39720 * 9 7 6 12 12 H 1.48513 * 109.46893 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47141 * 120.00241 * 11 9 7 14 14 H 1.48503 * 109.47498 * 240.00682 * 11 9 7 15 15 C 1.34773 * 119.99710 * 269.99805 * 6 5 3 16 16 O 1.21291 * 120.00656 * 5.04205 * 15 6 5 17 17 C 1.50701 * 119.99577 * 185.03482 * 15 6 5 18 18 H 1.09001 * 110.21843 * 34.89117 * 17 15 6 19 19 C 1.54485 * 110.24835 * 272.86931 * 17 15 6 20 20 C 1.54624 * 101.76583 * 266.41832 * 19 17 15 21 21 C 1.51287 * 104.19588 * 335.20159 * 20 19 17 22 22 O 1.21274 * 124.94253 * 196.27956 * 21 20 19 23 23 N 1.34418 * 110.11296 * 16.25075 * 21 20 19 24 24 H 1.09002 * 109.47086 * 299.99524 * 1 2 3 25 25 H 1.09002 * 109.47501 * 59.99818 * 1 2 3 26 26 H 1.09004 * 109.47271 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47053 * 60.00723 * 5 3 2 28 28 H 1.08995 * 109.47258 * 300.00559 * 5 3 2 29 29 H 0.97003 * 119.99766 * 184.97535 * 10 9 7 30 30 H 1.09000 * 110.96828 * 24.53774 * 19 17 15 31 31 H 1.08999 * 110.96838 * 148.29209 * 19 17 15 32 32 H 1.08998 * 110.48820 * 216.52387 * 20 19 17 33 33 H 1.09001 * 110.60262 * 93.93433 * 20 19 17 34 34 H 0.97000 * 124.34650 * 180.42676 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.1765 3.3363 1.1878 8 1 4.8177 4.2046 1.2260 9 6 3.5537 2.8813 2.3436 10 7 2.9139 1.7335 2.3368 11 14 3.6259 3.9011 3.9069 12 1 4.4005 5.1424 3.6529 13 1 2.2475 4.2562 4.3304 14 1 4.2866 3.1158 4.9802 15 6 4.1722 3.3267 -1.1667 16 8 3.9123 2.7754 -2.2154 17 6 4.7080 4.7353 -1.1685 18 1 5.4235 4.8672 -0.3568 19 6 3.5495 5.7482 -1.0323 20 6 3.2411 6.0753 -2.5117 21 6 4.5376 5.7826 -3.2345 22 8 4.8119 6.1663 -4.3517 23 7 5.3414 5.0361 -2.4578 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9557 0.7811 -0.8909 28 1 3.9564 0.7805 0.8890 29 1 2.4185 1.4497 3.1211 30 1 2.6875 5.2917 -0.5458 31 1 3.8721 6.6397 -0.4946 32 1 2.9716 7.1256 -2.6220 33 1 2.4423 5.4360 -2.8874 34 1 6.2266 4.7350 -2.7161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318637934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:30 Heat of formation + Delta-G solvation = -158.833582 kcal Electronic energy + Delta-G solvation = -21878.783443 eV Core-core repulsion = 18390.788644 eV Total energy + Delta-G solvation = -3487.994799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83048 -41.02874 -39.76978 -37.51578 -36.89318 -36.46712 -33.46004 -32.23550 -30.80902 -28.84697 -27.68136 -26.41701 -23.61286 -22.09002 -21.52357 -21.11679 -19.35776 -18.68001 -18.34890 -17.91017 -17.22580 -17.03180 -16.67308 -16.27950 -15.87723 -15.50573 -15.42066 -14.64551 -14.54016 -14.31418 -14.18101 -13.91647 -13.50020 -13.29732 -13.01753 -12.85853 -12.66570 -12.45654 -12.22040 -12.15788 -11.94837 -11.55446 -11.43630 -11.12745 -10.93519 -10.87860 -9.95061 -9.83508 -8.31508 -5.98505 1.42385 1.50996 1.55009 1.65219 1.71677 1.84866 2.11394 2.36492 2.44949 2.93978 3.14298 3.46628 3.65226 3.99447 4.13749 4.29847 4.33715 4.36450 4.40589 4.54626 4.58405 4.72278 4.79926 4.95898 5.08085 5.13104 5.45583 5.66473 5.75195 5.78663 6.00650 6.33359 7.08659 7.20395 7.25399 7.46121 7.84303 8.70913 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.008133 C = 0.006199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.476197 B = 3441.972625 C = 4516.107112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.491 3.509 4 O -0.546 6.546 5 C 0.153 3.847 6 N -0.435 5.435 7 C -0.337 4.337 8 H 0.131 0.869 9 C 0.001 3.999 10 N -0.906 5.906 11 Si 0.991 3.009 12 H -0.242 1.242 13 H -0.295 1.295 14 H -0.284 1.284 15 C 0.447 3.553 16 O -0.627 6.627 17 C 0.133 3.867 18 H 0.136 0.864 19 C -0.104 4.104 20 C -0.150 4.150 21 C 0.523 3.477 22 O -0.586 6.586 23 N -0.700 5.700 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.131 0.869 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 2.654 2.507 3.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.334 3.666 4 O -0.435 6.435 5 C 0.027 3.973 6 N -0.154 5.154 7 C -0.463 4.463 8 H 0.148 0.852 9 C -0.199 4.199 10 N -0.547 5.547 11 Si 0.816 3.184 12 H -0.165 1.165 13 H -0.222 1.222 14 H -0.210 1.210 15 C 0.236 3.764 16 O -0.514 6.514 17 C 0.025 3.975 18 H 0.153 0.847 19 C -0.142 4.142 20 C -0.190 4.190 21 C 0.311 3.689 22 O -0.468 6.468 23 N -0.352 5.352 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.149 0.851 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.106 0.894 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.327 2.757 1.642 3.225 hybrid contribution -0.265 -0.381 0.723 0.859 sum 0.062 2.376 2.365 3.353 Atomic orbital electron populations 1.23265 0.76413 1.04730 1.01101 1.86434 1.23915 1.34119 1.85019 1.24045 0.92653 0.80658 0.69195 1.90457 1.67413 1.37517 1.48068 1.20714 0.87048 0.85897 1.03650 1.43622 1.57316 1.08447 1.05982 1.20219 1.29121 1.12907 0.84095 0.85215 1.26084 0.94840 0.96427 1.02539 1.69753 1.33116 1.20099 1.31712 0.84878 0.77455 0.79082 0.77033 1.16481 1.22211 1.20968 1.21252 0.82722 0.89342 0.83086 1.90560 1.58110 1.69755 1.32953 1.21517 0.97908 0.91441 0.86643 0.84700 1.22494 0.97202 0.98923 0.95585 1.22336 0.95195 1.05588 0.95833 1.21246 0.86947 0.76399 0.84327 1.90663 1.78948 1.57128 1.20018 1.45960 1.19238 1.52271 1.17741 0.93549 0.93227 0.85071 0.90752 0.84618 0.92067 0.90081 0.85434 0.85166 0.89420 0.74672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.47 16 2 O -0.38 -15.95 10.57 -51.39 -0.54 -16.49 16 3 C 0.49 23.65 5.91 71.24 0.42 24.07 16 4 O -0.55 -29.02 15.93 21.97 0.35 -28.67 16 5 C 0.15 7.06 5.21 85.63 0.45 7.50 16 6 N -0.44 -19.68 2.11 -639.58 -1.35 -21.03 16 7 C -0.34 -14.42 9.08 84.04 0.76 -13.66 16 8 H 0.13 4.75 6.02 -2.91 -0.02 4.73 16 9 C 0.00 0.05 5.41 84.93 0.46 0.51 16 10 N -0.91 -43.25 8.20 21.66 0.18 -43.07 16 11 Si 0.99 35.49 29.56 68.60 2.03 37.52 16 12 H -0.24 -7.65 7.11 99.48 0.71 -6.94 16 13 H -0.30 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 15 C 0.45 19.48 6.76 87.66 0.59 20.07 16 16 O -0.63 -31.71 16.27 -3.06 -0.05 -31.76 16 17 C 0.13 4.40 3.10 44.70 0.14 4.54 16 18 H 0.14 3.75 6.48 -2.39 -0.02 3.73 16 19 C -0.10 -3.01 6.64 31.65 0.21 -2.80 16 20 C -0.15 -4.51 6.85 30.59 0.21 -4.30 16 21 C 0.52 18.72 8.43 87.90 0.74 19.46 16 22 O -0.59 -24.78 18.03 -3.01 -0.05 -24.84 16 23 N -0.70 -22.78 5.50 -442.97 -2.44 -25.22 16 24 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 25 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 26 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 27 H 0.07 3.35 7.50 -2.39 -0.02 3.33 16 28 H 0.14 6.33 6.29 -2.39 -0.02 6.32 16 29 H 0.27 12.61 8.32 -92.71 -0.77 11.84 16 30 H 0.08 2.78 7.89 -2.39 -0.02 2.76 16 31 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.41 12.16 8.96 -92.71 -0.83 11.33 16 Total: -1.00 -67.47 295.73 3.62 -63.86 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.32 Total: 31.83 kcal Atomic # 6 Polarization: 52.69 SS G_CDS: 5.18 Total: 57.87 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -3.61 Total: -89.33 kcal Atomic # 8 Polarization: -101.45 SS G_CDS: -0.30 Total: -101.75 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -67.47 3.62 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318637934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.976 kcal (2) G-P(sol) polarization free energy of solvation -67.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds