Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48505 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47189 * 299.99769 * 3 2 1 6 6 H 1.48495 * 109.47282 * 60.00250 * 3 2 1 7 7 C 1.37875 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46857 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.46786 * 179.97438 * 11 10 9 13 13 C 1.34229 * 117.00149 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00297 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.47356 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.53545 * 57.82632 * 16 15 13 18 18 N 1.47319 * 110.59560 * 294.99962 * 16 15 13 19 19 C 1.34526 * 106.61635 * 241.31682 * 18 16 15 20 20 O 1.21543 * 123.76817 * 180.02562 * 19 18 16 21 21 N 1.33787 * 112.45950 * 0.26762 * 19 18 16 22 22 C 1.34769 * 111.64565 * 359.53813 * 21 19 18 23 23 O 1.21233 * 127.15754 * 180.14345 * 22 21 19 24 24 H 0.97000 * 119.99894 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46689 * 60.00165 * 9 7 2 26 26 H 1.08997 * 109.46922 * 300.00234 * 9 7 2 27 27 H 1.08994 * 109.46822 * 59.99961 * 10 9 7 28 28 H 1.09003 * 109.46670 * 299.99925 * 10 9 7 29 29 H 1.08999 * 109.47134 * 60.00615 * 11 10 9 30 30 H 1.08994 * 109.47280 * 299.99612 * 11 10 9 31 31 H 1.09001 * 109.47672 * 60.00277 * 15 13 12 32 32 H 1.08997 * 109.47106 * 299.99626 * 15 13 12 33 33 H 0.96998 * 126.68994 * 61.30049 * 18 16 15 34 34 H 0.97006 * 124.18214 * 179.69195 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 8 2.4237 -6.0907 0.0037 13 6 1.9107 -7.3311 0.0036 14 8 0.7128 -7.4894 0.0028 15 6 2.8286 -8.5262 0.0046 16 6 1.9953 -9.8094 0.0037 17 1 1.3322 -9.8340 -0.8610 18 7 1.2230 -9.9266 1.2527 19 6 1.6423 -11.0513 1.8602 20 8 1.2058 -11.4481 2.9228 21 7 2.5972 -11.6813 1.1664 22 6 2.8919 -11.0314 0.0232 23 8 3.7084 -11.3540 -0.8129 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5574 -0.8881 26 1 0.6247 -2.5562 0.8919 27 1 2.8718 -3.6035 0.8926 28 1 2.8718 -3.6051 -0.8873 29 1 0.8539 -5.0453 -0.8869 30 1 0.8533 -5.0443 0.8931 31 1 3.4569 -8.5012 0.8950 32 1 3.4580 -8.5016 -0.8850 33 1 0.5446 -9.3125 1.5744 34 1 3.0231 -12.5055 1.4501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320057730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -149.275401 kcal Electronic energy + Delta-G solvation = -19742.885289 eV Core-core repulsion = 16255.304963 eV Total energy + Delta-G solvation = -3487.580325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.84173 -40.45025 -39.07071 -37.09704 -36.40534 -34.49026 -34.08930 -31.96440 -31.34850 -27.47981 -26.15946 -23.48859 -23.12376 -22.10307 -20.92340 -20.39437 -18.82401 -17.87573 -17.44553 -17.15113 -16.64658 -16.51705 -16.24625 -15.98273 -15.53657 -14.86731 -14.59787 -14.51639 -14.14470 -13.68621 -13.16397 -12.68243 -12.26454 -12.12537 -11.95060 -11.52462 -11.04494 -10.86908 -10.85288 -10.74645 -10.74020 -10.54153 -10.52377 -9.96733 -9.82672 -9.58567 -9.21160 -8.44301 -6.08848 -4.12099 1.04616 1.94750 2.02043 2.46016 2.57491 2.79782 3.26753 3.34505 3.38419 3.49644 3.89422 4.30519 4.38733 4.64363 4.87614 4.90923 5.08353 5.27437 5.45004 5.47066 5.53981 5.88713 6.28693 6.39121 6.43914 6.47836 6.69108 6.87119 6.89268 7.53454 7.62272 7.63551 7.72121 7.89171 8.29727 8.94383 9.52760 11.02581 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.002754 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.724432 B =10163.250566 C =10453.777824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.068 3.932 12 O -0.352 6.352 13 C 0.464 3.536 14 O -0.513 6.513 15 C -0.118 4.118 16 C 0.104 3.896 17 H 0.141 0.859 18 N -0.713 5.713 19 C 0.702 3.298 20 O -0.542 6.542 21 N -0.678 5.678 22 C 0.534 3.466 23 O -0.460 6.460 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.449 0.551 34 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -21.791 -0.149 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.004 4.004 12 O -0.268 6.268 13 C 0.307 3.693 14 O -0.402 6.402 15 C -0.157 4.157 16 C -0.006 4.006 17 H 0.158 0.842 18 N -0.379 5.379 19 C 0.401 3.599 20 O -0.415 6.415 21 N -0.350 5.350 22 C 0.318 3.682 23 O -0.329 6.329 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.296 0.704 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.126 -21.974 -0.076 22.564 hybrid contribution 0.113 0.911 0.217 0.943 sum 5.239 -21.063 0.140 21.706 Atomic orbital electron populations 1.69970 1.06099 1.26731 1.50519 1.25032 0.94883 0.99416 0.95132 0.86489 0.80093 0.83511 0.77643 1.19648 1.20946 1.20945 1.21199 0.93169 0.90640 1.51043 0.92355 1.19057 0.93815 0.90745 0.97702 1.21786 0.99997 0.90893 1.02090 1.23593 0.91107 0.83342 1.02377 1.86499 1.42809 1.14949 1.82578 1.23089 0.88179 0.85257 0.72766 1.90671 1.16728 1.86919 1.45890 1.21523 0.97899 0.88011 1.08285 1.21856 0.93761 0.93333 0.91654 0.84159 1.45719 1.43429 1.26239 1.22524 1.15906 0.79460 0.81165 0.83377 1.91080 1.60516 1.69386 1.20513 1.44300 1.39110 1.28629 1.22953 1.20580 0.82144 0.84714 0.80730 1.90884 1.32229 1.70110 1.39657 0.92896 0.96202 0.96227 0.92071 0.92036 0.91220 0.91269 0.86404 0.84808 0.70435 0.72291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.13 5.53 -26.73 -0.15 -2.28 16 11 C 0.07 1.12 5.47 37.16 0.20 1.33 16 12 O -0.35 -4.91 10.22 -39.25 -0.40 -5.31 16 13 C 0.46 5.22 7.84 36.00 0.28 5.50 16 14 O -0.51 -6.75 14.60 -18.76 -0.27 -7.02 16 15 C -0.12 -0.81 5.60 -27.88 -0.16 -0.96 16 16 C 0.10 0.68 3.18 -68.20 -0.22 0.46 16 17 H 0.14 0.79 8.07 -51.93 -0.42 0.37 16 18 N -0.71 -5.58 5.85 -59.19 -0.35 -5.93 16 19 C 0.70 6.29 8.99 -88.02 -0.79 5.50 16 20 O -0.54 -6.94 18.04 5.33 0.10 -6.85 16 21 N -0.68 -4.33 5.70 -15.79 -0.09 -4.42 16 22 C 0.53 3.68 8.15 -10.56 -0.09 3.59 16 23 O -0.46 -4.30 18.02 5.60 0.10 -4.19 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 30 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.45 3.76 8.01 -40.82 -0.33 3.43 16 34 H 0.43 1.92 8.96 -40.82 -0.37 1.55 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -33.35 307.10 -6.07 -39.42 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.03 Total: -1.34 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.46 Total: 0.44 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.30 Total: -35.90 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.48 Total: -23.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.35 -6.07 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320057730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.858 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds