Wall clock time and date at job start Mon Mar 30 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99933 * 2 1 4 4 H 1.48505 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47189 * 299.99769 * 3 2 1 6 6 H 1.48495 * 109.47282 * 60.00250 * 3 2 1 7 7 C 1.37875 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46857 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.46786 * 179.97438 * 11 10 9 13 13 C 1.34229 * 117.00149 * 180.02562 * 12 11 10 14 14 O 1.20833 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00297 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.47356 * 180.02562 * 15 13 12 17 17 H 1.08993 * 110.53545 * 57.82632 * 16 15 13 18 18 N 1.47319 * 110.59560 * 294.99962 * 16 15 13 19 19 C 1.34526 * 106.61635 * 241.31682 * 18 16 15 20 20 O 1.21543 * 123.76817 * 180.02562 * 19 18 16 21 21 N 1.33787 * 112.45950 * 0.26762 * 19 18 16 22 22 C 1.34769 * 111.64565 * 359.53813 * 21 19 18 23 23 O 1.21233 * 127.15754 * 180.14345 * 22 21 19 24 24 H 0.97000 * 119.99894 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46689 * 60.00165 * 9 7 2 26 26 H 1.08997 * 109.46922 * 300.00234 * 9 7 2 27 27 H 1.08994 * 109.46822 * 59.99961 * 10 9 7 28 28 H 1.09003 * 109.46670 * 299.99925 * 10 9 7 29 29 H 1.08999 * 109.47134 * 60.00615 * 11 10 9 30 30 H 1.08994 * 109.47280 * 299.99612 * 11 10 9 31 31 H 1.09001 * 109.47672 * 60.00277 * 15 13 12 32 32 H 1.08997 * 109.47106 * 299.99626 * 15 13 12 33 33 H 0.96998 * 126.68994 * 61.30049 * 18 16 15 34 34 H 0.97006 * 124.18214 * 179.69195 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 8 2.4237 -6.0907 0.0037 13 6 1.9107 -7.3311 0.0036 14 8 0.7128 -7.4894 0.0028 15 6 2.8286 -8.5262 0.0046 16 6 1.9953 -9.8094 0.0037 17 1 1.3322 -9.8340 -0.8610 18 7 1.2230 -9.9266 1.2527 19 6 1.6423 -11.0513 1.8602 20 8 1.2058 -11.4481 2.9228 21 7 2.5972 -11.6813 1.1664 22 6 2.8919 -11.0314 0.0232 23 8 3.7084 -11.3540 -0.8129 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5574 -0.8881 26 1 0.6247 -2.5562 0.8919 27 1 2.8718 -3.6035 0.8926 28 1 2.8718 -3.6051 -0.8873 29 1 0.8539 -5.0453 -0.8869 30 1 0.8533 -5.0443 0.8931 31 1 3.4569 -8.5012 0.8950 32 1 3.4580 -8.5016 -0.8850 33 1 0.5446 -9.3125 1.5744 34 1 3.0231 -12.5055 1.4501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320057730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:27 Heat of formation + Delta-G solvation = -174.575121 kcal Electronic energy + Delta-G solvation = -19743.982367 eV Core-core repulsion = 16255.304963 eV Total energy + Delta-G solvation = -3488.677404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.49813 -41.45196 -39.78193 -38.09930 -37.27715 -35.92389 -35.13235 -33.70239 -32.18566 -29.08536 -27.10625 -25.10795 -23.84206 -22.85707 -22.14441 -21.73413 -19.48388 -18.86154 -18.52553 -18.13898 -17.84396 -17.59820 -16.99552 -16.93275 -16.48317 -16.36518 -15.84542 -15.35661 -15.16986 -14.67004 -14.30728 -14.02476 -13.85303 -13.62289 -13.04609 -12.83056 -12.49856 -12.34092 -12.28042 -12.06210 -11.82690 -11.54659 -11.53552 -11.38390 -11.36031 -11.18961 -10.63759 -10.57232 -8.21620 -6.32616 0.41728 1.11630 1.30635 1.41986 1.42589 1.55397 1.61905 1.89752 2.10340 2.41796 2.85435 3.12768 3.28806 3.70094 3.79291 4.04630 4.08439 4.28767 4.39561 4.45881 4.57375 4.83219 4.90276 5.03769 5.10423 5.43393 5.53983 5.66207 5.70771 5.81850 5.82505 6.20324 6.29090 6.63972 6.84158 7.04354 7.37179 8.90615 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.045098 B = 0.002754 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.724432 B =10163.250566 C =10453.777824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.080 3.920 12 O -0.356 6.356 13 C 0.463 3.537 14 O -0.533 6.533 15 C -0.107 4.107 16 C 0.106 3.894 17 H 0.155 0.845 18 N -0.710 5.710 19 C 0.706 3.294 20 O -0.583 6.583 21 N -0.665 5.665 22 C 0.549 3.451 23 O -0.479 6.479 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.003 1.003 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.447 0.553 34 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -22.264 -0.580 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.134 4.134 11 C 0.006 3.994 12 O -0.272 6.272 13 C 0.308 3.692 14 O -0.423 6.423 15 C -0.145 4.145 16 C -0.003 4.003 17 H 0.172 0.828 18 N -0.375 5.375 19 C 0.405 3.595 20 O -0.459 6.459 21 N -0.337 5.337 22 C 0.334 3.666 23 O -0.348 6.348 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.178 0.822 33 H 0.293 0.707 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 6.840 -22.473 -0.526 23.497 hybrid contribution -0.438 0.987 0.333 1.130 sum 6.402 -21.486 -0.193 22.421 Atomic orbital electron populations 1.70097 1.07825 1.27826 1.51613 1.25984 0.95765 1.03444 0.94690 0.85375 0.79178 0.78658 0.77699 1.18361 1.20465 1.20519 1.21674 0.93755 0.91974 1.50594 0.91727 1.18939 0.94305 0.92484 0.95489 1.21461 0.98731 0.90675 1.02537 1.23124 0.90770 0.83368 1.02118 1.86475 1.42039 1.15487 1.83181 1.23901 0.88642 0.85087 0.71594 1.90676 1.17964 1.86919 1.46714 1.21608 0.97118 0.85418 1.10381 1.21957 0.93796 0.93102 0.91455 0.82781 1.45755 1.43200 1.25743 1.22782 1.15932 0.79421 0.81246 0.82862 1.91058 1.61969 1.70467 1.22428 1.44135 1.38315 1.28781 1.22452 1.20399 0.81486 0.84468 0.80231 1.90896 1.33115 1.70611 1.40217 0.92716 0.98390 0.98495 0.91610 0.91455 0.91504 0.91651 0.84636 0.82232 0.70693 0.71131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.70 5.53 30.59 0.17 -3.53 16 11 C 0.08 2.57 5.47 71.98 0.39 2.96 16 12 O -0.36 -9.26 10.22 -51.40 -0.53 -9.78 16 13 C 0.46 9.45 7.84 71.23 0.56 10.01 16 14 O -0.53 -13.29 14.60 21.94 0.32 -12.97 16 15 C -0.11 -1.13 5.60 29.85 0.17 -0.96 16 16 C 0.11 1.11 3.18 44.37 0.14 1.26 16 17 H 0.16 1.31 8.07 -2.39 -0.02 1.29 16 18 N -0.71 -10.01 5.85 -459.60 -2.69 -12.70 16 19 C 0.71 11.77 8.99 179.44 1.61 13.39 16 20 O -0.58 -14.71 18.04 -3.85 -0.07 -14.78 16 21 N -0.67 -7.27 5.70 -441.12 -2.52 -9.79 16 22 C 0.55 6.20 8.15 87.94 0.72 6.92 16 23 O -0.48 -7.72 18.02 -2.88 -0.05 -7.77 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 30 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 31 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.45 7.02 8.01 -92.71 -0.74 6.28 16 34 H 0.44 3.17 8.96 -92.70 -0.83 2.34 16 Total: -1.00 -71.86 307.10 0.96 -70.89 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -0.42 Total: 4.87 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 4.60 Total: 2.27 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -4.92 Total: -77.92 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.33 Total: -45.30 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.86 0.96 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320057730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.683 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds