Wall clock time and date at job start Mon Mar 30 2020 01:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.50696 * 114.26242 * 139.79733 * 6 5 4 8 8 O 1.20826 * 119.99918 * 266.47132 * 7 6 5 9 9 O 1.34230 * 120.00184 * 86.47828 * 7 6 5 10 10 C 1.45198 * 116.99907 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99998 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00014 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00088 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99914 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99881 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47267 * 89.99756 * 18 16 14 20 20 H 1.48498 * 109.47299 * 209.99767 * 18 16 14 21 21 H 1.48506 * 109.47448 * 329.99808 * 18 16 14 22 22 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 26 26 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 27 27 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 28 28 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 29 29 H 1.08994 * 109.47717 * 299.99603 * 10 9 7 30 30 H 1.09000 * 109.47392 * 59.99549 * 10 9 7 31 31 H 0.97001 * 120.00084 * 359.97438 * 13 11 10 32 32 H 0.96994 * 119.99648 * 179.97438 * 17 16 14 33 33 H 1.08990 * 113.47221 * 321.86278 * 22 4 2 34 34 H 1.09007 * 113.46563 * 92.30415 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8798 -4.1036 -0.2090 8 8 4.7111 -4.0127 0.6632 9 8 3.5937 -5.3023 -0.7411 10 6 4.3219 -6.4455 -0.2203 11 6 3.8704 -7.6951 -0.9314 12 8 3.0189 -7.6286 -1.7928 13 7 4.4126 -8.8864 -0.6104 14 6 4.0022 -10.0232 -1.2577 15 1 3.2440 -9.9640 -2.0246 16 6 4.5616 -11.2514 -0.9270 17 7 4.1678 -12.3410 -1.5471 18 14 5.8723 -11.3538 0.3999 19 1 5.2257 -11.5733 1.7186 20 1 6.7891 -12.4838 0.1040 21 1 6.6443 -10.0855 0.4322 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3633 0.8900 -0.5138 26 1 1.7665 -3.0226 1.0062 27 1 0.9552 -2.8281 -0.6064 28 1 3.1236 -2.8009 -1.7865 29 1 5.3899 -6.3006 -0.3826 30 1 4.1269 -6.5448 0.8475 31 1 5.0938 -8.9395 0.0782 32 1 4.5586 -13.1983 -1.3166 33 1 4.2291 -0.9380 -0.6169 34 1 3.9998 -1.7333 0.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320779130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:29 Heat of formation + Delta-G solvation = -107.917996 kcal Electronic energy + Delta-G solvation = -19805.913190 eV Core-core repulsion = 16320.126256 eV Total energy + Delta-G solvation = -3485.786934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36043 -39.96571 -38.50616 -37.89815 -36.26580 -34.11325 -31.85849 -31.63850 -29.60066 -28.42965 -26.42149 -25.00053 -23.83768 -20.63804 -19.70582 -19.40099 -18.65191 -18.14485 -17.37426 -16.84614 -16.51777 -15.97855 -15.84140 -15.32806 -14.95308 -14.47705 -14.06269 -13.66947 -13.42288 -13.16242 -13.10140 -12.86375 -12.80710 -12.46918 -12.38297 -12.27637 -12.12986 -11.31254 -11.28079 -10.72633 -10.69094 -10.64089 -10.21650 -10.09088 -9.72150 -9.19669 -8.72566 -8.33940 -6.43411 -3.96595 1.95733 2.16118 2.23174 2.69145 2.95209 2.99922 3.09241 3.49769 3.70686 3.99878 4.02964 4.26452 4.41695 4.64477 4.79600 4.84418 4.97361 5.01945 5.03771 5.06454 5.22629 5.22930 5.29000 5.47043 5.50437 5.60446 5.61543 6.35524 7.25161 7.39402 7.61792 7.74738 7.96156 8.42931 8.79252 9.25286 9.60281 10.68784 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.003086 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.359906 B = 9071.649595 C = 9428.787028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.544 3.456 3 O -0.544 6.544 4 N -0.650 5.650 5 C 0.120 3.880 6 C -0.124 4.124 7 C 0.474 3.526 8 O -0.507 6.507 9 O -0.319 6.319 10 C 0.057 3.943 11 C 0.446 3.554 12 O -0.557 6.557 13 N -0.578 5.578 14 C -0.309 4.309 15 H 0.123 0.877 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.268 1.268 22 C 0.122 3.878 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.373 0.627 32 H 0.276 0.724 33 H 0.090 0.910 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 18.184 5.643 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.335 3.665 3 O -0.421 6.421 4 N -0.387 5.387 5 C -0.004 4.004 6 C -0.144 4.144 7 C 0.315 3.685 8 O -0.395 6.395 9 O -0.233 6.233 10 C -0.021 4.021 11 C 0.231 3.769 12 O -0.439 6.439 13 N -0.218 5.218 14 C -0.437 4.437 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.193 1.193 22 C 0.000 4.000 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.161 0.839 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.301 18.770 5.277 19.775 hybrid contribution 1.248 -0.529 1.162 1.785 sum -2.053 18.242 6.439 19.453 Atomic orbital electron populations 1.21850 0.90661 1.05154 1.04968 1.20435 0.90200 0.80970 0.74873 1.90746 1.70828 1.30183 1.50367 1.49621 1.09455 1.05623 1.74010 1.22975 0.96836 0.79237 1.01313 1.22858 0.97562 0.90202 1.03792 1.23067 0.80782 0.84935 0.79685 1.90682 1.32176 1.86841 1.29847 1.86563 1.61168 1.15112 1.60423 1.22799 0.96501 0.83865 0.98891 1.19170 0.86817 0.83469 0.87425 1.90610 1.33771 1.85546 1.33994 1.42039 1.37091 1.06554 1.36154 1.19424 1.22533 0.82427 1.19352 0.85984 1.25045 0.97968 0.95009 0.97852 1.69610 1.42223 0.98670 1.40790 0.86675 0.81831 0.78714 0.82250 1.19393 1.19936 1.19343 1.22907 0.84471 0.90762 1.01902 0.88637 0.89895 0.88610 0.88589 0.88240 0.83913 0.89267 0.89283 0.79370 0.91340 0.89121 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.18 36.01 0.37 -0.63 16 2 C 0.54 5.62 8.19 -10.98 -0.09 5.53 16 3 O -0.54 -8.01 17.88 5.56 0.10 -7.91 16 4 N -0.65 -5.95 3.69 -185.03 -0.68 -6.63 16 5 C 0.12 0.87 7.85 -8.36 -0.07 0.81 16 6 C -0.12 -1.11 4.62 -91.11 -0.42 -1.53 16 7 C 0.47 5.97 7.53 36.00 0.27 6.24 16 8 O -0.51 -7.28 15.70 -18.75 -0.29 -7.58 16 9 O -0.32 -5.01 9.75 -45.90 -0.45 -5.45 16 10 C 0.06 0.93 5.94 36.01 0.21 1.15 16 11 C 0.45 9.79 7.86 -10.99 -0.09 9.70 16 12 O -0.56 -14.61 16.08 -14.12 -0.23 -14.84 16 13 N -0.58 -13.18 5.09 -10.96 -0.06 -13.23 16 14 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 15 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 16 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 17 N -0.87 -24.61 13.96 55.50 0.77 -23.83 16 18 Si 0.88 18.52 27.74 -169.99 -4.71 13.80 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 22 C 0.12 1.12 7.96 -8.49 -0.07 1.06 16 23 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.35 7.76 -51.93 -0.40 -0.05 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.10 0.54 7.96 -51.93 -0.41 0.13 16 28 H 0.14 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.09 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 32 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.98 7.46 -51.92 -0.39 0.59 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -35.36 307.97 -4.98 -40.34 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.95 Total: 5.83 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -0.13 Total: 14.87 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.04 Total: -43.70 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.87 Total: -35.78 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.71 Total: 13.80 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.36 -4.98 -40.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320779130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.578 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds