Wall clock time and date at job start Mon Mar 30 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.50696 * 114.26242 * 139.79733 * 6 5 4 8 8 O 1.20826 * 119.99918 * 266.47132 * 7 6 5 9 9 O 1.34230 * 120.00184 * 86.47828 * 7 6 5 10 10 C 1.45198 * 116.99907 * 179.97438 * 9 7 6 11 11 C 1.50704 * 109.47164 * 179.97438 * 10 9 7 12 12 O 1.21299 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99998 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00014 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00088 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99914 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99881 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47267 * 89.99756 * 18 16 14 20 20 H 1.48498 * 109.47299 * 209.99767 * 18 16 14 21 21 H 1.48506 * 109.47448 * 329.99808 * 18 16 14 22 22 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 26 26 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 27 27 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 28 28 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 29 29 H 1.08994 * 109.47717 * 299.99603 * 10 9 7 30 30 H 1.09000 * 109.47392 * 59.99549 * 10 9 7 31 31 H 0.97001 * 120.00084 * 359.97438 * 13 11 10 32 32 H 0.96994 * 119.99648 * 179.97438 * 17 16 14 33 33 H 1.08990 * 113.47221 * 321.86278 * 22 4 2 34 34 H 1.09007 * 113.46563 * 92.30415 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8798 -4.1036 -0.2090 8 8 4.7111 -4.0127 0.6632 9 8 3.5937 -5.3023 -0.7411 10 6 4.3219 -6.4455 -0.2203 11 6 3.8704 -7.6951 -0.9314 12 8 3.0189 -7.6286 -1.7928 13 7 4.4126 -8.8864 -0.6104 14 6 4.0022 -10.0232 -1.2577 15 1 3.2440 -9.9640 -2.0246 16 6 4.5616 -11.2514 -0.9270 17 7 4.1678 -12.3410 -1.5471 18 14 5.8723 -11.3538 0.3999 19 1 5.2257 -11.5733 1.7186 20 1 6.7891 -12.4838 0.1040 21 1 6.6443 -10.0855 0.4322 22 6 3.5942 -1.5740 -0.0002 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3633 0.8900 -0.5138 26 1 1.7665 -3.0226 1.0062 27 1 0.9552 -2.8281 -0.6064 28 1 3.1236 -2.8009 -1.7865 29 1 5.3899 -6.3006 -0.3826 30 1 4.1269 -6.5448 0.8475 31 1 5.0938 -8.9395 0.0782 32 1 4.5586 -13.1983 -1.3166 33 1 4.2291 -0.9380 -0.6169 34 1 3.9998 -1.7333 0.9989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320779130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:28 Heat of formation + Delta-G solvation = -134.541981 kcal Electronic energy + Delta-G solvation = -19807.067693 eV Core-core repulsion = 16320.126256 eV Total energy + Delta-G solvation = -3486.941436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.24998 -40.99228 -40.10803 -38.87680 -37.43243 -36.05901 -33.84718 -32.39277 -30.60446 -29.51196 -27.06996 -26.61704 -24.97659 -21.61646 -21.50670 -20.50773 -20.09579 -19.14367 -18.16809 -17.94558 -17.67085 -17.45974 -16.82931 -16.73649 -16.13081 -15.82423 -15.42502 -14.91307 -14.59617 -14.27265 -14.19187 -14.05571 -13.83252 -13.61123 -13.32580 -13.25564 -12.98896 -12.96860 -12.44294 -12.01428 -11.96963 -11.85396 -11.71200 -11.56533 -11.05809 -10.57751 -10.32280 -9.95119 -8.44516 -6.07486 0.98100 1.20127 1.32041 1.35136 1.45739 1.49131 1.78637 1.83697 2.21661 2.83984 2.98166 3.10362 3.39545 3.64208 3.77153 3.95141 4.02790 4.15571 4.18291 4.26401 4.40914 4.46670 4.57091 4.62618 4.67253 4.91870 5.07522 5.26813 5.49439 5.87564 6.46625 6.54627 6.60279 6.79689 6.99018 7.28118 7.80147 8.72066 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.003086 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.359906 B = 9071.649595 C = 9428.787028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.536 3.464 3 O -0.598 6.598 4 N -0.650 5.650 5 C 0.125 3.875 6 C -0.117 4.117 7 C 0.481 3.519 8 O -0.523 6.523 9 O -0.338 6.338 10 C 0.067 3.933 11 C 0.449 3.551 12 O -0.607 6.607 13 N -0.577 5.577 14 C -0.332 4.332 15 H 0.062 0.938 16 C -0.008 4.008 17 N -0.927 5.927 18 Si 0.961 3.039 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.230 1.230 22 C 0.117 3.883 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.158 0.842 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.393 0.607 32 H 0.282 0.718 33 H 0.089 0.911 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 19.165 7.642 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.330 3.670 3 O -0.480 6.480 4 N -0.386 5.386 5 C 0.003 3.997 6 C -0.137 4.137 7 C 0.324 3.676 8 O -0.412 6.412 9 O -0.253 6.253 10 C -0.010 4.010 11 C 0.236 3.764 12 O -0.492 6.492 13 N -0.219 5.219 14 C -0.461 4.461 15 H 0.080 0.920 16 C -0.208 4.208 17 N -0.566 5.566 18 Si 0.780 3.220 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.154 1.154 22 C -0.006 4.006 23 H 0.130 0.870 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.176 0.824 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.502 19.753 7.288 21.203 hybrid contribution 0.924 -0.797 0.460 1.304 sum -1.578 18.956 7.748 20.539 Atomic orbital electron populations 1.21889 0.87173 1.06409 1.06351 1.21262 0.91817 0.80298 0.73641 1.90718 1.72170 1.32074 1.52990 1.49690 1.09485 1.06305 1.73091 1.23136 0.96751 0.77666 1.02145 1.22921 0.98208 0.87937 1.04650 1.23589 0.80473 0.84529 0.79039 1.90679 1.33021 1.86828 1.30645 1.86567 1.61614 1.15860 1.61246 1.22623 0.97568 0.81531 0.99299 1.20222 0.85097 0.84851 0.86256 1.90588 1.35798 1.86638 1.36172 1.41829 1.37843 1.05738 1.36532 1.19002 1.22598 0.84923 1.19550 0.92036 1.26085 1.00516 0.93675 1.00555 1.69781 1.44141 0.99663 1.43046 0.85422 0.78062 0.80289 0.78178 1.17919 1.19965 1.15369 1.22932 0.84941 0.90948 1.01772 0.87023 0.87632 0.88364 0.87633 0.85653 0.82412 0.86651 0.86202 0.77097 0.90880 0.89268 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.18 71.24 0.73 -0.78 16 2 C 0.54 10.37 8.19 87.66 0.72 11.08 16 3 O -0.60 -17.61 17.88 -3.02 -0.05 -17.66 16 4 N -0.65 -10.62 3.69 -857.69 -3.16 -13.78 16 5 C 0.13 1.44 7.85 83.27 0.65 2.10 16 6 C -0.12 -1.81 4.62 -11.11 -0.05 -1.86 16 7 C 0.48 10.90 7.53 71.23 0.54 11.43 16 8 O -0.52 -13.60 15.70 21.96 0.34 -13.26 16 9 O -0.34 -9.85 9.75 -45.07 -0.44 -10.29 16 10 C 0.07 2.00 5.94 71.24 0.42 2.42 16 11 C 0.45 19.37 7.86 87.66 0.69 20.06 16 12 O -0.61 -32.57 16.08 15.71 0.25 -32.31 16 13 N -0.58 -25.83 5.09 -306.97 -1.56 -27.39 16 14 C -0.33 -18.60 10.16 84.04 0.85 -17.74 16 15 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 16 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 17 N -0.93 -53.75 13.96 21.66 0.30 -53.45 16 18 Si 0.96 36.75 27.74 68.60 1.90 38.65 16 19 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 22 C 0.12 1.97 7.96 83.19 0.66 2.64 16 23 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.11 0.52 7.76 -2.39 -0.02 0.50 16 25 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 27 H 0.13 0.86 7.96 -2.39 -0.02 0.84 16 28 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 30 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 31 H 0.39 14.30 5.76 -92.71 -0.53 13.76 16 32 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.75 7.46 -2.38 -0.02 1.74 16 Total: -1.00 -82.00 307.97 3.81 -78.20 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.55 Total: 21.94 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 5.68 Total: 29.36 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -4.42 Total: -94.62 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: 0.10 Total: -73.53 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 1.90 Total: 38.65 kcal Total: -82.00 3.81 -78.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320779130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.345 kcal (2) G-P(sol) polarization free energy of solvation -82.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds