Wall clock time and date at job start Mon Mar 30 2020 01:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 120.00060 * 2 1 4 4 H 1.48502 * 109.47078 * 240.00406 * 3 2 1 5 5 H 1.48501 * 109.46788 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46895 * 120.00047 * 3 2 1 7 7 C 1.39927 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00290 * 162.60830 * 7 2 1 9 9 C 1.41441 * 119.99829 * 342.60619 * 7 2 1 10 10 C 1.40797 * 120.17600 * 154.91158 * 9 7 2 11 11 C 1.37707 * 120.03672 * 179.97438 * 10 9 7 12 12 C 1.38383 * 120.40162 * 0.02562 * 11 10 9 13 13 C 1.39893 * 120.35861 * 359.79081 * 12 11 10 14 14 C 1.47875 * 120.02439 * 180.26331 * 13 12 11 15 15 N 1.31220 * 126.37535 * 179.87519 * 14 13 12 16 16 N 1.28669 * 109.24686 * 179.82286 * 15 14 13 17 17 C 1.30383 * 109.52098 * 0.43960 * 16 15 14 18 18 C 1.50701 * 126.18703 * 179.76179 * 17 16 15 19 19 C 1.53003 * 109.46806 * 89.96065 * 18 17 16 20 20 C 1.52995 * 117.50249 * 243.62140 * 19 18 17 21 21 C 1.52995 * 60.00330 * 252.51384 * 20 19 18 22 22 O 1.34400 * 107.62957 * 359.73352 * 17 16 15 23 23 C 1.38995 * 119.95146 * 0.43934 * 13 12 11 24 24 H 0.97005 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.08006 * 119.98727 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.79988 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.81810 * 180.02562 * 12 11 10 28 28 H 1.09002 * 109.47486 * 209.95929 * 18 17 16 29 29 H 1.09002 * 109.47123 * 329.96826 * 18 17 16 30 30 H 1.09006 * 115.54999 * 29.33394 * 19 18 17 31 31 H 1.09002 * 117.49624 * 0.02562 * 20 19 18 32 32 H 1.09003 * 117.50329 * 145.02217 * 20 19 18 33 33 H 1.09005 * 117.49359 * 252.51067 * 21 20 19 34 34 H 1.08996 * 117.50370 * 107.49169 * 21 20 19 35 35 H 1.08004 * 120.19981 * 179.81489 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2126 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0509 -1.2331 -0.2801 9 6 1.3493 -2.4089 0.3651 10 6 1.8189 -3.6485 -0.1095 11 6 1.1757 -4.8122 0.2487 12 6 0.0661 -4.7734 1.0747 13 6 -0.4124 -3.5513 1.5590 14 6 -1.5952 -3.5188 2.4458 15 7 -2.1454 -2.4493 2.9706 16 7 -3.1571 -2.7995 3.6843 17 6 -3.2858 -4.0966 3.6509 18 6 -4.3427 -4.9044 4.3590 19 6 -5.5607 -5.0619 3.4465 20 6 -6.8766 -4.4339 3.9098 21 6 -6.7022 -5.9535 3.9395 22 8 -2.3057 -4.5829 2.8703 23 6 0.2225 -2.3672 1.2029 24 1 -0.4851 0.8401 -0.0004 25 1 2.6846 -3.6868 -0.7542 26 1 1.5395 -5.7610 -0.1172 27 1 -0.4308 -5.6919 1.3501 28 1 -3.9437 -5.8883 4.6055 29 1 -4.6387 -4.3924 5.2747 30 1 -5.3503 -5.0590 2.3769 31 1 -6.8745 -3.9080 4.8645 32 1 -7.5323 -4.0173 3.1451 33 1 -7.2431 -6.5368 3.1942 34 1 -6.5855 -6.4279 4.9139 35 1 -0.1453 -1.4212 1.5720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324161934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:40 Heat of formation + Delta-G solvation = 51.938552 kcal Electronic energy + Delta-G solvation = -19220.869884 eV Core-core repulsion = 16185.156864 eV Total energy + Delta-G solvation = -3035.713019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.16739 -39.50360 -38.56360 -37.21971 -35.71003 -33.97853 -31.92463 -31.46856 -28.77715 -27.35206 -25.19035 -24.00688 -23.21267 -22.62155 -22.19088 -21.65892 -19.49577 -18.36681 -18.10441 -17.32482 -16.98538 -16.54675 -16.26026 -15.46621 -15.25213 -14.92273 -14.67334 -14.30443 -13.94114 -13.70570 -13.50860 -13.16172 -12.95124 -12.87501 -12.74426 -12.59211 -12.35261 -12.27355 -12.16868 -11.68559 -11.56855 -11.41851 -11.18041 -10.93988 -10.85908 -9.48605 -9.28545 -8.68444 -6.41728 -0.32294 0.84021 0.95890 1.18520 1.38489 1.45411 1.51740 1.62614 2.19176 2.68445 2.75037 2.91640 3.39999 3.60102 3.72431 3.86958 3.97727 4.10920 4.16258 4.30454 4.44780 4.53015 4.57407 4.65075 4.79815 4.82238 4.86715 5.03514 5.04180 5.14770 5.19237 5.27770 5.28187 5.42709 5.77669 5.90442 5.99422 6.20716 6.51070 6.83856 6.86562 7.25605 8.27694 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.004314 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.675680 B = 6488.580223 C = 7334.906663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.212 4.212 11 C -0.086 4.086 12 C -0.207 4.207 13 C -0.038 4.038 14 C 0.228 3.772 15 N -0.322 5.322 16 N -0.316 5.316 17 C 0.160 3.840 18 C 0.018 3.982 19 C -0.180 4.180 20 C -0.179 4.179 21 C -0.145 4.145 22 O -0.224 6.224 23 C -0.130 4.130 24 H 0.289 0.711 25 H 0.118 0.882 26 H 0.142 0.858 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 -9.913 6.538 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.520 4.520 8 H 0.108 0.892 9 C 0.072 3.928 10 C -0.232 4.232 11 C -0.104 4.104 12 C -0.228 4.228 13 C -0.040 4.040 14 C 0.021 3.979 15 N -0.168 5.168 16 N -0.161 5.161 17 C -0.051 4.051 18 C -0.020 4.020 19 C -0.199 4.199 20 C -0.216 4.216 21 C -0.182 4.182 22 O -0.104 6.104 23 C -0.152 4.152 24 H 0.099 0.901 25 H 0.136 0.864 26 H 0.160 0.840 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.159 -8.491 6.844 14.241 hybrid contribution 0.461 -0.041 -0.577 0.739 sum -8.698 -8.531 6.267 13.701 Atomic orbital electron populations 1.69859 1.09247 1.30921 1.34648 1.26844 0.95385 1.04926 0.91173 0.85232 0.78707 0.75407 0.80332 1.17582 1.19772 1.18440 1.19869 0.98635 0.91817 1.41681 0.89212 1.17871 0.91274 0.94085 0.89530 1.21479 1.03974 0.92473 1.05234 1.20868 0.94576 0.98215 0.96727 1.20723 1.01337 0.94712 1.06035 1.17418 0.91280 0.96405 0.98890 1.26064 0.95233 0.79600 0.97018 1.74772 1.05651 1.25324 1.11046 1.74252 1.12577 1.11570 1.17720 1.28852 0.91439 0.91218 0.93565 1.20052 0.86412 0.99354 0.96160 1.22072 0.89507 1.09564 0.98743 1.23195 0.97881 0.96906 1.03599 1.23128 0.98322 0.92751 1.03996 1.84820 1.35798 1.37986 1.51832 1.21368 0.98636 0.95526 0.99629 0.90086 0.86441 0.83979 0.85951 0.85486 0.85262 0.89703 0.87346 0.88929 0.87633 0.86150 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.69 10.97 21.82 0.24 -44.45 16 2 C 0.03 1.65 5.14 85.25 0.44 2.09 16 3 Si 0.98 38.59 29.59 68.60 2.03 40.62 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.49 -25.91 9.05 23.47 0.21 -25.70 16 8 H 0.09 4.42 7.90 -2.91 -0.02 4.39 16 9 C 0.07 3.98 5.57 -21.32 -0.12 3.86 16 10 C -0.21 -9.71 9.78 22.77 0.22 -9.48 16 11 C -0.09 -3.48 10.01 22.18 0.22 -3.26 16 12 C -0.21 -8.89 9.73 22.71 0.22 -8.67 16 13 C -0.04 -1.86 5.87 -20.14 -0.12 -1.98 16 14 C 0.23 10.75 7.99 87.34 0.70 11.44 16 15 N -0.32 -15.90 11.90 -166.30 -1.98 -17.88 16 16 N -0.32 -13.32 12.22 -165.34 -2.02 -15.34 16 17 C 0.16 5.48 7.68 88.32 0.68 6.16 16 18 C 0.02 0.37 6.12 29.85 0.18 0.55 16 19 C -0.18 -3.49 5.72 -10.79 -0.06 -3.55 16 20 C -0.18 -2.89 10.18 30.59 0.31 -2.58 16 21 C -0.15 -1.82 10.25 30.59 0.31 -1.50 16 22 O -0.22 -8.81 10.66 -8.38 -0.09 -8.90 16 23 C -0.13 -7.14 8.33 23.00 0.19 -6.95 16 24 H 0.29 14.53 8.30 -92.70 -0.77 13.76 16 25 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 26 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 27 H 0.12 4.55 7.92 -2.91 -0.02 4.53 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.13 2.12 7.88 -2.39 -0.02 2.10 16 30 H 0.08 2.04 8.07 -2.38 -0.02 2.02 16 31 H 0.11 1.55 8.03 -2.39 -0.02 1.53 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 6.60 5.98 -2.91 -0.02 6.58 16 Total: -1.00 -66.08 310.84 2.68 -63.40 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.11 Total: 22.12 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.39 Total: -39.57 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -3.76 Total: -77.67 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.09 Total: -8.90 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -66.08 2.68 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324161934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.338 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds