Wall clock time and date at job start Mon Mar 30 2020 00:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99898 * 2 1 4 4 C 1.50700 * 109.46805 * 179.97438 * 3 2 1 5 5 N 1.31139 * 126.54962 * 90.25094 * 4 3 2 6 6 C 1.34493 * 105.61446 * 180.12030 * 5 4 3 7 7 C 1.50700 * 126.28811 * 179.90706 * 6 5 4 8 8 O 1.45209 * 109.46811 * 269.71756 * 7 6 5 9 9 C 1.34226 * 116.99600 * 180.02562 * 8 7 6 10 10 O 1.20825 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99822 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.46456 * 299.99150 * 11 9 8 13 13 C 1.52997 * 109.47238 * 59.99316 * 11 9 8 14 14 C 1.50697 * 109.47178 * 179.97438 * 11 9 8 15 15 H 1.07998 * 120.00039 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99815 * 179.97438 * 14 11 9 17 17 N 1.31517 * 119.99524 * 179.97438 * 16 14 11 18 18 Si 1.86794 * 120.00267 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.46589 * 89.99875 * 18 16 14 20 20 H 1.48490 * 109.47303 * 209.99928 * 18 16 14 21 21 H 1.48497 * 109.46869 * 330.00523 * 18 16 14 22 22 N 1.29950 * 107.42628 * 359.64535 * 6 5 4 23 23 O 1.21299 * 110.24812 * 0.21851 * 22 6 5 24 24 H 1.09001 * 109.47052 * 300.00637 * 1 2 3 25 25 H 1.09006 * 109.46765 * 59.99695 * 1 2 3 26 26 H 1.08990 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47343 * 60.00125 * 3 2 1 28 28 H 1.08998 * 109.47352 * 299.99664 * 3 2 1 29 29 H 1.08996 * 109.47509 * 149.71674 * 7 6 5 30 30 H 1.09002 * 109.46871 * 29.70827 * 7 6 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 13 11 9 32 32 H 1.09001 * 109.46832 * 60.00314 * 13 11 9 33 33 H 1.09004 * 109.47261 * 300.00295 * 13 11 9 34 34 H 0.97001 * 119.99599 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2918 1.1292 -1.0525 6 6 5.5435 1.0252 -0.5714 7 6 6.8070 0.9255 -1.3868 8 8 7.1051 -0.4714 -1.6483 9 6 8.2072 -0.7348 -2.3678 10 8 8.8996 0.1717 -2.7662 11 6 8.5810 -2.1613 -2.6786 12 1 8.7374 -2.7068 -1.7481 13 6 7.4535 -2.8223 -3.4741 14 6 9.8489 -2.1823 -3.4929 15 1 10.3351 -1.2555 -3.7591 16 6 10.3881 -3.3849 -3.8981 17 7 11.4943 -3.4032 -4.6092 18 14 9.5475 -4.9881 -3.4371 19 1 8.5690 -5.3550 -4.4922 20 1 10.5651 -6.0620 -3.3106 21 1 8.8399 -4.8214 -2.1422 22 7 5.4637 1.0322 0.7256 23 8 4.3057 1.1243 1.0745 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 7.6320 1.3759 -0.8350 30 1 6.6718 1.4512 -2.3320 31 1 7.7237 -3.8541 -3.6985 32 1 7.2972 -2.2766 -4.4046 33 1 6.5362 -2.8070 -2.8854 34 1 11.8739 -4.2492 -4.8939 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:53 Heat of formation + Delta-G solvation = -74.930387 kcal Electronic energy + Delta-G solvation = -20100.178989 eV Core-core repulsion = 16615.822506 eV Total energy + Delta-G solvation = -3484.356484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.96642 -41.61184 -39.02478 -38.08860 -36.94916 -36.03203 -34.37202 -33.45903 -29.98990 -29.37934 -27.22694 -26.81213 -25.57501 -24.70210 -22.77597 -21.76575 -19.57196 -19.13888 -18.95322 -18.20082 -17.89803 -17.48185 -17.29373 -17.03562 -16.68565 -16.38789 -15.35352 -15.18557 -14.61483 -14.29060 -14.22726 -14.02036 -13.69066 -13.52108 -13.16005 -13.01821 -12.97000 -12.65699 -12.44365 -12.40139 -12.28912 -11.96264 -11.57625 -11.45340 -11.33992 -11.14034 -10.80161 -10.78311 -8.34526 -6.45274 -0.22549 0.56247 1.21607 1.33800 1.38770 1.49442 1.50649 1.74355 2.29262 2.34408 2.66142 2.98366 3.08263 3.60760 3.80545 3.94647 4.02873 4.18717 4.27644 4.30391 4.42662 4.48536 4.56491 4.64990 4.65947 4.71676 4.89499 4.97230 5.17299 5.29526 5.39181 6.01563 6.17245 6.66479 6.79276 6.85574 7.19400 8.82032 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027324 B = 0.003855 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.508967 B = 7260.902397 C = 7936.541306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.158 3.842 4 C 0.190 3.810 5 N -0.471 5.471 6 C 0.158 3.842 7 C 0.153 3.847 8 O -0.358 6.358 9 C 0.486 3.514 10 O -0.528 6.528 11 C 0.022 3.978 12 H 0.079 0.921 13 C -0.140 4.140 14 C -0.534 4.534 15 H 0.042 0.958 16 C 0.020 3.980 17 N -0.942 5.942 18 Si 0.951 3.049 19 H -0.256 1.256 20 H -0.293 1.293 21 H -0.238 1.238 22 N -0.370 5.370 23 O 0.108 5.892 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.441 8.147 12.032 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C 0.080 3.920 4 C -0.031 4.031 5 N -0.206 5.206 6 C -0.114 4.114 7 C 0.078 3.922 8 O -0.275 6.275 9 C 0.330 3.670 10 O -0.416 6.416 11 C 0.002 3.998 12 H 0.097 0.903 13 C -0.197 4.197 14 C -0.572 4.572 15 H 0.060 0.940 16 C -0.179 4.179 17 N -0.580 5.580 18 Si 0.776 3.224 19 H -0.181 1.181 20 H -0.220 1.220 21 H -0.161 1.161 22 N -0.074 5.074 23 O 0.040 5.960 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.150 0.850 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.172 8.122 11.874 28.993 hybrid contribution 0.299 -0.234 -0.212 0.435 sum -24.873 7.889 11.662 28.582 Atomic orbital electron populations 1.23063 0.76894 1.04489 1.02312 1.87922 1.23316 1.26381 1.96014 1.21053 0.76676 0.86938 1.07313 1.29216 0.99207 0.95138 0.79556 1.71879 1.00031 1.18692 1.29965 1.25150 0.94804 1.03277 0.88132 1.20856 0.90218 0.81662 0.99505 1.86552 1.44587 1.28892 1.67419 1.24315 0.76181 0.93712 0.72768 1.90557 1.51937 1.48574 1.50498 1.19108 0.95804 0.85933 0.98925 0.90340 1.22014 0.97214 1.00003 1.00504 1.20982 1.07490 0.94467 1.34218 0.93979 1.25860 0.95219 1.02937 0.93850 1.70025 1.21886 1.28196 1.37939 0.85818 0.77976 0.77639 0.81000 1.18103 1.21983 1.16126 1.74686 0.98750 1.18423 1.15523 1.85295 1.11099 1.63744 1.35824 0.91125 0.91975 0.88729 0.84995 0.86059 0.87743 0.87168 0.92700 0.92554 0.90511 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.42 -6.05 10.69 -148.98 -1.59 -7.65 16 3 C 0.16 1.56 6.56 71.24 0.47 2.03 16 4 C 0.19 3.87 8.14 88.38 0.72 4.59 16 5 N -0.47 -12.90 11.55 -303.19 -3.50 -16.40 16 6 C 0.16 4.82 7.86 138.46 1.09 5.91 16 7 C 0.15 5.01 6.09 71.24 0.43 5.45 16 8 O -0.36 -14.05 10.11 -51.38 -0.52 -14.57 16 9 C 0.49 22.43 7.25 71.24 0.52 22.95 16 10 O -0.53 -27.38 15.21 21.97 0.33 -27.05 16 11 C 0.02 1.04 2.33 -12.29 -0.03 1.01 16 12 H 0.08 3.57 7.20 -2.39 -0.02 3.56 16 13 C -0.14 -5.78 8.60 71.98 0.62 -5.16 16 14 C -0.53 -31.63 8.95 25.60 0.23 -31.40 16 15 H 0.04 2.88 7.00 -2.91 -0.02 2.86 16 16 C 0.02 1.14 5.45 84.65 0.46 1.60 16 17 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 18 Si 0.95 43.00 24.38 68.60 1.67 44.67 16 19 H -0.26 -10.75 6.87 99.48 0.68 -10.07 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.24 -9.68 6.53 99.48 0.65 -9.04 16 22 N -0.37 -10.81 12.16 -60.31 -0.73 -11.54 16 23 O 0.11 2.51 11.31 74.84 0.85 3.35 16 24 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 25 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 3.26 8.13 -2.39 -0.02 3.24 16 30 H 0.11 3.41 8.13 -2.39 -0.02 3.39 16 31 H 0.05 2.24 3.28 -2.39 -0.01 2.23 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.67 8.11 -2.38 -0.02 2.65 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -77.98 301.12 3.61 -74.37 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.05 Total: 5.40 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.75 Total: 8.38 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -3.94 Total: -86.90 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.93 Total: -45.91 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.67 Total: 44.67 kcal Total: -77.98 3.61 -74.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.558 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds