Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34234 * 116.99446 * 2 1 4 4 O 1.20816 * 120.00487 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99486 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47330 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00170 * 269.73010 * 6 5 3 8 8 H 1.08006 * 119.99698 * 187.29093 * 7 6 5 9 9 C 1.38946 * 119.99859 * 7.28187 * 7 6 5 10 10 N 1.31416 * 120.00053 * 24.79158 * 9 7 6 11 11 Si 1.86800 * 119.99922 * 204.78339 * 9 7 6 12 12 H 1.48498 * 109.47068 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47211 * 120.00602 * 11 9 7 14 14 H 1.48502 * 109.47193 * 240.00341 * 11 9 7 15 15 C 1.34786 * 119.99759 * 89.99922 * 6 5 3 16 16 O 1.21289 * 119.99995 * 355.34725 * 15 6 5 17 17 C 1.50699 * 119.99974 * 175.34881 * 15 6 5 18 18 H 1.09003 * 110.43254 * 324.54975 * 17 15 6 19 19 C 1.54625 * 110.48766 * 202.00615 * 17 15 6 20 20 C 1.54473 * 101.76694 * 216.52203 * 19 17 15 21 21 N 1.46765 * 105.47255 * 25.41738 * 20 19 17 22 22 C 1.34419 * 111.29965 * 342.98075 * 21 20 19 23 23 O 1.21280 * 124.94038 * 180.44648 * 22 21 20 24 24 H 1.08999 * 109.47338 * 300.00135 * 1 2 3 25 25 H 1.09001 * 109.46833 * 60.00148 * 1 2 3 26 26 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47089 * 59.99691 * 5 3 2 28 28 H 1.09000 * 109.47465 * 300.00029 * 5 3 2 29 29 H 0.97001 * 119.99694 * 182.72388 * 10 9 7 30 30 H 1.09004 * 110.96794 * 334.64214 * 19 17 15 31 31 H 1.09005 * 110.96841 * 98.36291 * 19 17 15 32 32 H 1.09005 * 110.24748 * 144.41175 * 20 19 17 33 33 H 1.08997 * 110.24639 * 266.32754 * 20 19 17 34 34 H 0.96997 * 124.35223 * 162.98861 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1819 3.3348 -1.1878 8 1 4.6002 4.3306 -1.1914 9 6 3.8470 2.7175 -2.3867 10 7 2.9313 1.7752 -2.4071 11 14 4.6981 3.2274 -3.9694 12 1 5.6821 4.3009 -3.6786 13 1 5.4013 2.0566 -4.5527 14 1 3.6879 3.7296 -4.9351 15 6 4.1723 3.3268 1.1668 16 8 3.9190 2.7729 2.2157 17 6 4.7000 4.7383 1.1683 18 1 5.4201 4.8762 0.3617 19 6 5.3452 5.0734 2.5330 20 6 4.9475 6.5550 2.7142 21 7 3.7245 6.7318 1.9223 22 6 3.5635 5.7287 1.0421 23 8 2.6415 5.6321 0.2601 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7811 0.8908 29 1 2.7256 1.3168 -3.2369 30 1 4.9229 4.4564 3.3261 31 1 6.4287 4.9622 2.4900 32 1 4.7503 6.7669 3.7651 33 1 5.7377 7.2061 2.3405 34 1 3.1112 7.4767 2.0213 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327990565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = -158.413024 kcal Electronic energy + Delta-G solvation = -22026.821994 eV Core-core repulsion = 18538.845432 eV Total energy + Delta-G solvation = -3487.976562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82522 -41.03461 -39.61540 -37.52428 -37.08718 -36.50949 -33.52337 -32.51945 -30.37821 -28.70551 -27.76546 -26.52924 -23.28640 -22.46083 -21.75408 -20.83498 -18.89807 -18.57958 -18.34065 -18.08338 -17.32123 -17.13920 -16.82138 -16.29475 -16.11020 -15.37952 -15.24642 -14.68997 -14.53756 -14.32946 -14.21390 -13.78794 -13.51318 -13.36041 -13.15328 -12.88294 -12.68790 -12.52236 -12.40597 -12.05146 -11.80094 -11.59225 -11.51953 -10.90606 -10.83314 -10.58914 -10.00093 -9.96104 -8.40207 -5.85337 1.29639 1.46765 1.51510 1.60839 1.72447 1.81968 2.15489 2.34491 2.53768 2.84914 3.10897 3.57965 3.67863 4.07655 4.21004 4.24336 4.32351 4.34236 4.39438 4.54651 4.64031 4.68144 4.77806 4.84389 5.08427 5.30132 5.45208 5.59987 5.69735 5.91938 6.07821 6.29407 7.05222 7.22068 7.34496 7.43238 7.81660 8.68237 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.009162 C = 0.006799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.463280 B = 3055.389874 C = 4117.181022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.483 3.517 4 O -0.539 6.539 5 C 0.150 3.850 6 N -0.428 5.428 7 C -0.331 4.331 8 H 0.108 0.892 9 C -0.008 4.008 10 N -0.896 5.896 11 Si 0.992 3.008 12 H -0.253 1.253 13 H -0.266 1.266 14 H -0.296 1.296 15 C 0.465 3.535 16 O -0.626 6.626 17 C -0.133 4.133 18 H 0.136 0.864 19 C -0.115 4.115 20 C 0.107 3.893 21 N -0.724 5.724 22 C 0.516 3.484 23 O -0.561 6.561 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.137 0.863 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.272 0.728 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 3.823 5.918 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.292 6.292 3 C 0.326 3.674 4 O -0.427 6.427 5 C 0.024 3.976 6 N -0.144 5.144 7 C -0.458 4.458 8 H 0.125 0.875 9 C -0.209 4.209 10 N -0.535 5.535 11 Si 0.816 3.184 12 H -0.177 1.177 13 H -0.190 1.190 14 H -0.223 1.223 15 C 0.255 3.745 16 O -0.515 6.515 17 C -0.157 4.157 18 H 0.154 0.846 19 C -0.153 4.153 20 C -0.016 4.016 21 N -0.381 5.381 22 C 0.301 3.699 23 O -0.438 6.438 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.155 0.845 27 H 0.147 0.853 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.009 3.598 5.846 9.123 hybrid contribution -0.957 0.395 -1.087 1.501 sum 5.052 3.993 4.759 8.007 Atomic orbital electron populations 1.23274 0.76442 1.04861 1.00920 1.86422 1.23910 1.33780 1.85103 1.24205 0.92832 0.80750 0.69618 1.90557 1.67406 1.37763 1.46931 1.20795 0.86937 0.85577 1.04263 1.43751 1.55611 1.08904 1.06176 1.19910 1.41048 1.02496 0.82349 0.87451 1.26061 0.95159 0.97182 1.02523 1.70010 1.26865 1.27202 1.29436 0.84906 0.78000 0.78892 0.76643 1.17662 1.19039 1.22267 1.20077 0.83134 0.88267 0.83058 1.90482 1.59180 1.69450 1.32338 1.21922 0.98370 0.91456 1.03956 0.84646 1.22703 1.03104 0.96259 0.93209 1.22364 0.85952 0.95866 0.97369 1.46149 1.27885 1.25528 1.38529 1.20772 0.85907 0.83300 0.79894 1.90827 1.35908 1.76854 1.40218 0.93390 0.93997 0.84460 0.85332 0.88728 0.91796 0.90448 0.85758 0.87429 0.87524 0.74319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.63 16 2 O -0.38 -17.22 10.57 -51.45 -0.54 -17.77 16 3 C 0.48 26.09 6.09 71.24 0.43 26.53 16 4 O -0.54 -33.64 16.01 21.99 0.35 -33.29 16 5 C 0.15 7.62 5.22 85.63 0.45 8.06 16 6 N -0.43 -22.63 2.11 -639.59 -1.35 -23.98 16 7 C -0.33 -17.52 8.71 84.04 0.73 -16.79 16 8 H 0.11 5.46 5.98 -2.91 -0.02 5.44 16 9 C -0.01 -0.44 4.92 84.92 0.42 -0.02 16 10 N -0.90 -48.81 9.03 21.66 0.20 -48.62 16 11 Si 0.99 40.80 29.62 68.60 2.03 42.83 16 12 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 13 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 14 H -0.30 -12.73 7.11 99.48 0.71 -12.02 16 15 C 0.47 23.20 6.72 87.66 0.59 23.79 16 16 O -0.63 -33.37 15.24 -3.06 -0.05 -33.41 16 17 C -0.13 -5.16 2.37 -11.55 -0.03 -5.19 16 18 H 0.14 4.85 6.64 -2.39 -0.02 4.84 16 19 C -0.11 -3.04 6.62 31.65 0.21 -2.83 16 20 C 0.11 2.06 7.78 86.83 0.68 2.74 16 21 N -0.72 -20.72 6.24 -459.82 -2.87 -23.59 16 22 C 0.52 21.80 7.76 87.90 0.68 22.48 16 23 O -0.56 -30.74 17.38 -3.03 -0.05 -30.79 16 24 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 25 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.13 6.42 6.18 -2.38 -0.01 6.41 16 28 H 0.09 4.44 7.49 -2.39 -0.02 4.42 16 29 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.08 2.43 6.90 -2.38 -0.02 2.41 16 31 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 10.08 8.96 -92.71 -0.83 9.25 16 Total: -1.00 -83.10 293.56 3.39 -79.71 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.32 Total: 27.52 kcal Atomic # 6 Polarization: 56.04 SS G_CDS: 5.36 Total: 61.39 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -4.03 Total: -96.19 kcal Atomic # 8 Polarization: -114.97 SS G_CDS: -0.29 Total: -115.26 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -83.10 3.39 -79.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327990565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.708 kcal (2) G-P(sol) polarization free energy of solvation -83.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds