Wall clock time and date at job start Mon Mar 30 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99961 * 2 1 4 4 O 1.20821 * 120.00218 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99803 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46627 * 180.02562 * 5 3 2 7 7 C 1.37102 * 119.99818 * 264.56463 * 6 5 3 8 8 H 1.07996 * 120.00183 * 146.27093 * 7 6 5 9 9 C 1.38949 * 119.99741 * 326.26603 * 7 6 5 10 10 N 1.31411 * 120.00444 * 337.56022 * 9 7 6 11 11 Si 1.86807 * 119.99432 * 157.56137 * 9 7 6 12 12 H 1.48498 * 109.47350 * 59.99988 * 11 9 7 13 13 H 1.48504 * 109.46959 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47159 * 299.99996 * 11 9 7 15 15 C 1.34775 * 120.00339 * 84.57099 * 6 5 3 16 16 O 1.21298 * 119.99523 * 359.97438 * 15 6 5 17 17 C 1.50696 * 120.00103 * 179.97438 * 15 6 5 18 18 H 1.09000 * 110.54183 * 57.39037 * 17 15 6 19 19 C 1.54634 * 110.48638 * 179.97438 * 17 15 6 20 20 C 1.54482 * 101.76436 * 143.47635 * 19 17 15 21 21 N 1.46766 * 105.47481 * 334.58339 * 20 19 17 22 22 C 1.34418 * 111.29720 * 17.01714 * 21 20 19 23 23 O 1.21291 * 124.94127 * 179.55466 * 22 21 20 24 24 H 1.09003 * 109.46823 * 300.00003 * 1 2 3 25 25 H 1.08991 * 109.47049 * 60.00030 * 1 2 3 26 26 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47228 * 60.00190 * 5 3 2 28 28 H 1.08998 * 109.46802 * 299.99412 * 5 3 2 29 29 H 0.97001 * 119.99892 * 179.97438 * 10 9 7 30 30 H 1.09001 * 110.97178 * 261.59569 * 19 17 15 31 31 H 1.09006 * 110.96794 * 25.35825 * 19 17 15 32 32 H 1.08994 * 110.24642 * 93.58653 * 20 19 17 33 33 H 1.09000 * 110.24103 * 215.58857 * 20 19 17 34 34 H 0.96999 * 124.35072 * 197.03446 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2834 3.3059 -1.1816 8 1 4.0622 4.3554 -1.3084 9 6 4.8738 2.5904 -2.2160 10 7 5.5370 1.4860 -1.9563 11 14 4.7248 3.1983 -3.9761 12 1 5.3280 4.5508 -4.0854 13 1 5.4361 2.2635 -4.8846 14 1 3.2910 3.2636 -4.3575 15 6 4.0674 3.3565 1.1625 16 8 3.8001 2.8025 2.2079 17 6 4.4951 4.8015 1.1632 18 1 3.8327 5.3968 0.5348 19 6 4.5170 5.3587 2.6055 20 6 5.7425 6.2982 2.5617 21 7 6.6038 5.7689 1.4977 22 6 5.9276 4.9299 0.6942 23 8 6.3975 4.3593 -0.2675 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.9558 0.7809 -0.8908 28 1 3.9564 0.7806 0.8892 29 1 5.9488 0.9863 -2.6785 30 1 3.6057 5.9161 2.8223 31 1 4.6648 4.5583 3.3307 32 1 5.4300 7.3148 2.3233 33 1 6.2673 6.2783 3.5168 34 1 7.5407 5.9953 1.3886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327990566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:36 Heat of formation + Delta-G solvation = -131.378474 kcal Electronic energy + Delta-G solvation = -21902.553241 eV Core-core repulsion = 18415.748985 eV Total energy + Delta-G solvation = -3486.804256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14896 -39.53984 -37.77922 -35.85351 -35.51151 -34.56711 -31.48254 -30.96544 -28.74194 -27.31446 -26.17854 -24.57158 -21.82827 -20.94782 -20.11189 -18.89677 -17.11968 -16.94662 -16.60750 -16.41559 -15.80950 -15.51971 -15.23517 -14.52793 -14.32923 -13.82166 -13.53195 -13.04240 -12.94447 -12.82802 -12.64305 -12.06144 -11.98600 -11.59888 -11.46080 -11.28015 -11.21236 -10.79275 -10.68346 -10.47751 -10.30398 -10.20605 -9.70555 -9.33175 -8.74098 -8.63106 -8.55209 -7.61407 -6.30958 -3.87747 3.10238 3.20090 3.23053 3.29135 3.32697 3.37075 3.76463 4.05823 4.22465 4.62766 4.92508 5.01392 5.21094 5.35758 5.47553 5.53834 5.54419 5.67120 5.71183 5.92624 5.97700 6.13229 6.26224 6.42540 6.55925 6.84872 7.05739 7.36445 7.54694 7.55828 7.76890 8.33338 8.61372 9.03113 9.13710 9.37556 9.81017 10.75459 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.009483 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.324090 B = 2952.085629 C = 4341.112821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.447 3.553 4 O -0.507 6.507 5 C 0.122 3.878 6 N -0.409 5.409 7 C -0.306 4.306 8 H 0.089 0.911 9 C 0.052 3.948 10 N -0.860 5.860 11 Si 0.912 3.088 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.491 3.509 16 O -0.599 6.599 17 C -0.124 4.124 18 H 0.118 0.882 19 C -0.120 4.120 20 C 0.106 3.894 21 N -0.748 5.748 22 C 0.519 3.481 23 O -0.460 6.460 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.269 0.731 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 4.182 4.760 6.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.393 6.393 5 C -0.004 4.004 6 N -0.125 5.125 7 C -0.433 4.433 8 H 0.106 0.894 9 C -0.153 4.153 10 N -0.497 5.497 11 Si 0.739 3.261 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.201 1.201 15 C 0.279 3.721 16 O -0.485 6.485 17 C -0.148 4.148 18 H 0.136 0.864 19 C -0.158 4.158 20 C -0.019 4.019 21 N -0.408 5.408 22 C 0.302 3.698 23 O -0.328 6.328 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.168 0.832 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.551 3.679 4.584 6.408 hybrid contribution 0.063 0.606 -0.987 1.160 sum -2.488 4.286 3.597 6.123 Atomic orbital electron populations 1.23084 0.78203 1.02570 1.01938 1.86553 1.22136 1.34879 1.84962 1.25345 0.93589 0.80819 0.71379 1.90558 1.67066 1.36421 1.45272 1.21060 0.84101 0.87684 1.07547 1.42982 1.55037 1.08605 1.05919 1.19117 1.38737 0.96090 0.89364 0.89363 1.25116 0.93489 0.96500 1.00213 1.69844 1.29372 1.17549 1.32952 0.86222 0.78293 0.79051 0.82508 1.19681 1.20915 1.20120 1.19601 0.81136 0.87774 0.83579 1.90521 1.56088 1.69988 1.31874 1.21725 0.97150 0.97599 0.98353 0.86399 1.22559 0.97478 0.99303 0.96473 1.21965 0.91923 0.97114 0.90905 1.46272 1.13288 1.49221 1.32035 1.20456 0.87947 0.78676 0.82696 1.90982 1.72746 1.44142 1.24927 0.92565 0.92508 0.88949 0.83246 0.88403 0.92045 0.89797 0.88569 0.91880 0.91026 0.75914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.32 10.57 -39.25 -0.41 -7.74 16 3 C 0.45 10.42 7.99 36.01 0.29 10.71 16 4 O -0.51 -12.84 16.06 -18.75 -0.30 -13.14 16 5 C 0.12 2.99 5.49 -5.19 -0.03 2.96 16 6 N -0.41 -10.64 2.09 -116.10 -0.24 -10.88 16 7 C -0.31 -8.09 5.94 -14.93 -0.09 -8.18 16 8 H 0.09 2.31 6.84 -52.49 -0.36 1.95 16 9 C 0.05 1.37 4.76 -17.47 -0.08 1.28 16 10 N -0.86 -23.11 11.34 55.50 0.63 -22.49 16 11 Si 0.91 20.82 29.61 -169.99 -5.03 15.79 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.49 12.17 6.83 -10.99 -0.08 12.10 16 16 O -0.60 -15.62 15.16 5.54 0.08 -15.54 16 17 C -0.12 -2.50 2.46 -91.78 -0.23 -2.73 16 18 H 0.12 2.28 7.55 -51.93 -0.39 1.89 16 19 C -0.12 -1.87 6.48 -25.09 -0.16 -2.03 16 20 C 0.11 1.30 7.78 -3.12 -0.02 1.28 16 21 N -0.75 -11.55 6.24 -59.20 -0.37 -11.92 16 22 C 0.52 10.77 7.67 -10.86 -0.08 10.69 16 23 O -0.46 -11.63 14.88 5.55 0.08 -11.54 16 24 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.15 3.78 5.34 -51.93 -0.28 3.50 16 28 H 0.10 2.36 7.59 -51.93 -0.39 1.96 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.66 7.00 -51.93 -0.36 1.30 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.40 5.33 8.96 -40.82 -0.37 4.97 16 LS Contribution 293.65 15.07 4.43 4.43 Total: -1.00 -33.76 293.65 -4.38 -38.14 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.82 Total: 7.19 kcal Atomic # 6 Polarization: 27.12 SS G_CDS: 0.58 Total: 27.70 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.02 Total: -45.28 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.55 Total: -47.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.76 -4.38 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327990566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.234 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds