Wall clock time and date at job start Mon Mar 30 2020 00:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37875 * 119.99533 * 294.35776 * 4 2 1 7 7 N 1.31516 * 119.99622 * 156.52011 * 6 4 2 8 8 Si 1.86795 * 120.00491 * 336.79577 * 6 4 2 9 9 H 1.48500 * 109.47540 * 179.72711 * 8 6 4 10 10 H 1.48504 * 109.47205 * 299.72639 * 8 6 4 11 11 H 1.48507 * 109.47067 * 59.72634 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45202 * 116.99956 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47682 * 180.02562 * 15 14 12 17 17 N 1.46508 * 109.47147 * 64.99533 * 16 15 14 18 18 C 1.34768 * 124.17815 * 269.73148 * 17 16 15 19 19 O 1.21232 * 127.15924 * 359.97438 * 18 17 16 20 20 C 1.51582 * 105.68278 * 179.97438 * 18 17 16 21 21 N 1.47317 * 103.59386 * 0.31772 * 20 18 17 22 22 C 1.33795 * 124.17415 * 90.02640 * 17 16 15 23 23 O 1.21531 * 123.76961 * 359.96802 * 22 17 16 24 24 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 25 25 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 27 27 H 0.96999 * 120.00622 * 355.21051 * 7 6 4 28 28 H 1.09006 * 109.46746 * 300.00065 * 15 14 12 29 29 H 1.08997 * 109.47007 * 59.99442 * 15 14 12 30 30 H 1.08994 * 109.47851 * 184.99928 * 16 15 14 31 31 H 1.09000 * 109.46825 * 305.00579 * 16 15 14 32 32 H 1.09004 * 110.76324 * 241.71426 * 20 18 17 33 33 H 1.08998 * 110.56849 * 118.83182 * 20 18 17 34 34 H 0.96996 * 126.69096 * 179.77400 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7978 -0.1753 2.4793 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2267 -0.9864 -3.5896 16 6 1.7558 -0.3193 -4.8834 17 7 2.3434 1.0190 -4.9847 18 6 1.7668 2.1375 -4.5023 19 8 0.7042 2.2230 -3.9250 20 6 2.7233 3.2664 -4.8317 21 7 3.8281 2.5904 -5.5336 22 6 3.5161 1.2824 -5.5725 23 8 4.2199 0.4349 -6.0857 24 1 -0.3634 0.4035 0.9451 25 1 -0.3633 0.6169 -0.8220 26 1 -0.3634 -1.0202 -0.1232 27 1 1.8988 -1.9133 3.4362 28 1 3.3163 -0.9861 -3.5568 29 1 1.8625 -2.0132 -3.5565 30 1 2.0700 -0.9196 -5.7371 31 1 0.6688 -0.2390 -4.8760 32 1 3.0835 3.7456 -3.9213 33 1 2.2440 3.9963 -5.4840 34 1 4.6251 3.0071 -5.8967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327995781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:57 Heat of formation + Delta-G solvation = -158.303011 kcal Electronic energy + Delta-G solvation = -21153.731302 eV Core-core repulsion = 17665.759510 eV Total energy + Delta-G solvation = -3487.971792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.28670 -41.44808 -39.58269 -37.86846 -37.14939 -35.99385 -35.83835 -33.34892 -31.28129 -28.55634 -26.90554 -25.87675 -24.36541 -23.72341 -21.59979 -21.34291 -19.59970 -19.07554 -18.55562 -18.21801 -17.82719 -17.41260 -17.08144 -16.49852 -16.20691 -15.56781 -15.23744 -15.09912 -15.04924 -14.84028 -14.34704 -14.23284 -14.00934 -13.70146 -13.37331 -13.06255 -12.91700 -12.40935 -12.16022 -12.10536 -11.72992 -11.67033 -11.28107 -11.21852 -11.13017 -10.93550 -10.44328 -10.40029 -8.86475 -6.43946 0.70278 1.18407 1.29371 1.49994 1.56447 1.68748 1.78246 1.98190 2.31576 2.50056 2.96074 3.09947 3.64475 3.73447 3.90150 4.03795 4.21272 4.34795 4.36618 4.39744 4.47210 4.59552 4.64679 4.73862 4.85143 5.05062 5.29794 5.42961 5.74633 5.84300 6.00636 6.04138 6.46758 6.52252 6.91040 7.10158 7.32433 8.52917 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.005360 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.541784 B = 5222.149285 C = 5669.273126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.028 3.972 3 H 0.072 0.928 4 C -0.620 4.620 5 H 0.023 0.977 6 C -0.006 4.006 7 N -0.920 5.920 8 Si 1.075 2.925 9 H -0.283 1.283 10 H -0.261 1.261 11 H -0.233 1.233 12 C 0.475 3.525 13 O -0.546 6.546 14 O -0.350 6.350 15 C 0.038 3.962 16 C 0.131 3.869 17 N -0.584 5.584 18 C 0.510 3.490 19 O -0.485 6.485 20 C 0.072 3.928 21 N -0.709 5.709 22 C 0.695 3.305 23 O -0.587 6.587 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.253 0.747 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 13.490 -21.563 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.657 4.657 5 H 0.041 0.959 6 C -0.206 4.206 7 N -0.553 5.553 8 Si 0.894 3.106 9 H -0.209 1.209 10 H -0.186 1.186 11 H -0.156 1.156 12 C 0.320 3.680 13 O -0.436 6.436 14 O -0.267 6.267 15 C -0.037 4.037 16 C 0.009 3.991 17 N -0.330 5.330 18 C 0.299 3.701 19 O -0.355 6.355 20 C -0.054 4.054 21 N -0.374 5.374 22 C 0.395 3.605 23 O -0.464 6.464 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.182 0.818 34 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -1.454 13.885 -20.389 24.711 hybrid contribution 1.154 -2.322 -0.841 2.726 sum -0.300 11.563 -21.230 24.177 Atomic orbital electron populations 1.21934 0.93648 1.00976 1.02207 1.18980 0.96124 0.97035 0.86994 0.91046 1.21922 1.41417 1.10207 0.92170 0.95901 1.27334 0.92031 1.10114 0.91093 1.70974 1.45746 1.05754 1.32874 0.83723 0.79751 0.69918 0.77256 1.20912 1.18569 1.15641 1.24551 0.76001 0.82516 0.84886 1.90521 1.37501 1.28080 1.87473 1.86617 1.69755 1.55564 1.14803 1.23595 0.99048 0.96969 0.84084 1.21822 1.00806 0.80711 0.95723 1.46475 1.21348 1.11017 1.54202 1.21630 0.86486 0.85554 0.76451 1.90844 1.21934 1.84747 1.37950 1.22737 0.86027 0.94315 1.02310 1.45377 1.25408 1.05375 1.61275 1.16069 0.80828 0.84817 0.78740 1.90991 1.54217 1.50126 1.51088 0.91899 0.90938 0.94343 0.93778 0.92542 0.89004 0.84511 0.86216 0.83473 0.81791 0.69884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.85 71.98 0.64 -4.85 16 2 C 0.03 1.37 2.34 -12.28 -0.03 1.34 16 3 H 0.07 3.21 6.72 -2.39 -0.02 3.19 16 4 C -0.62 -36.84 8.57 25.60 0.22 -36.62 16 5 H 0.02 1.57 7.02 -2.91 -0.02 1.55 16 6 C -0.01 -0.35 5.19 84.65 0.44 0.09 16 7 N -0.92 -57.93 13.70 21.45 0.29 -57.63 16 8 Si 1.08 47.41 26.45 68.60 1.81 49.23 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.23 -8.79 6.15 99.48 0.61 -8.18 16 12 C 0.48 22.33 7.24 71.24 0.52 22.84 16 13 O -0.55 -29.55 15.22 21.97 0.33 -29.22 16 14 O -0.35 -13.14 9.82 -51.39 -0.50 -13.64 16 15 C 0.04 1.14 5.81 71.98 0.42 1.56 16 16 C 0.13 2.81 6.11 86.38 0.53 3.33 16 17 N -0.58 -12.63 2.57 -773.13 -1.99 -14.62 16 18 C 0.51 10.20 8.03 87.94 0.71 10.91 16 19 O -0.48 -13.09 17.75 -2.88 -0.05 -13.14 16 20 C 0.07 0.62 7.97 85.76 0.68 1.31 16 21 N -0.71 -8.22 6.58 -480.31 -3.16 -11.39 16 22 C 0.69 14.92 8.62 179.44 1.55 16.47 16 23 O -0.59 -17.02 17.48 -3.81 -0.07 -17.09 16 24 H 0.06 2.65 5.48 -2.39 -0.01 2.63 16 25 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 26 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 27 H 0.25 16.44 8.73 -92.71 -0.81 15.63 16 28 H 0.06 1.88 8.13 -2.38 -0.02 1.87 16 29 H 0.09 2.62 8.13 -2.39 -0.02 2.60 16 30 H 0.14 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.12 2.29 8.00 -2.39 -0.02 2.27 16 32 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.45 2.81 8.96 -92.71 -0.83 1.97 16 Total: -1.00 -84.38 300.26 2.52 -81.86 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.18 Total: 9.25 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.67 Total: 16.39 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -4.86 Total: -83.64 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: -0.29 Total: -73.09 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.81 Total: 49.23 kcal Total: -84.38 2.52 -81.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.438 kcal (2) G-P(sol) polarization free energy of solvation -84.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds