Wall clock time and date at job start Mon Mar 30 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00149 * 2 1 4 4 O 1.20827 * 119.99948 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00116 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47155 * 179.97438 * 5 3 2 7 7 C 1.37094 * 119.99947 * 264.08516 * 6 5 3 8 8 H 1.08012 * 119.99887 * 196.60340 * 7 6 5 9 9 C 1.38946 * 120.00475 * 16.60530 * 7 6 5 10 10 N 1.31410 * 119.99584 * 20.78452 * 9 7 6 11 11 Si 1.86800 * 120.00393 * 200.78972 * 9 7 6 12 12 H 1.48504 * 109.47017 * 59.99526 * 11 9 7 13 13 H 1.48499 * 109.47131 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46698 * 299.99682 * 11 9 7 15 15 C 1.34776 * 119.99785 * 84.08070 * 6 5 3 16 16 O 1.21293 * 120.00265 * 0.02562 * 15 6 5 17 17 C 1.50704 * 119.99746 * 179.97438 * 15 6 5 18 18 C 1.53001 * 109.47009 * 180.02562 * 17 15 6 19 19 H 1.09007 * 112.92063 * 314.66772 * 18 17 15 20 20 C 1.53731 * 113.70725 * 183.18623 * 18 17 15 21 21 C 1.51516 * 86.60471 * 245.49633 * 20 18 17 22 22 O 1.21281 * 134.17420 * 180.02562 * 21 20 18 23 23 N 1.36119 * 91.65811 * 0.05336 * 21 20 18 24 24 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47297 * 299.99920 * 1 2 3 26 26 H 1.08999 * 109.46970 * 60.00175 * 1 2 3 27 27 H 1.08995 * 109.47488 * 60.00084 * 5 3 2 28 28 H 1.08996 * 109.47214 * 299.99427 * 5 3 2 29 29 H 0.97008 * 120.00183 * 179.97438 * 10 9 7 30 30 H 1.09003 * 109.46780 * 60.00765 * 17 15 6 31 31 H 1.08998 * 109.47560 * 300.00426 * 17 15 6 32 32 H 1.08997 * 113.69123 * 359.92334 * 20 18 17 33 33 H 1.09003 * 113.69368 * 130.97600 * 20 18 17 34 34 H 0.97003 * 132.49722 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2929 3.3021 -1.1823 8 1 4.8465 4.2295 -1.1746 9 6 3.8963 2.7399 -2.3894 10 7 2.9079 1.8744 -2.4178 11 14 4.7681 3.2142 -3.9720 12 1 6.2074 2.8634 -3.8686 13 1 4.1607 2.4800 -5.1109 14 1 4.6295 4.6760 -4.1944 15 6 4.0578 3.3603 1.1597 16 8 3.7828 2.8096 2.2048 17 6 4.4856 4.8054 1.1593 18 6 4.4886 5.3368 2.5940 19 1 3.5963 5.0548 3.1530 20 6 4.8375 6.8303 2.6992 21 6 6.0896 6.3939 3.4323 22 8 7.0282 6.9821 3.9262 23 7 5.7467 5.0815 3.3179 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7807 0.8892 29 1 2.6306 1.4821 -3.2606 30 1 3.7906 5.3899 0.5564 31 1 5.4883 4.8873 0.7397 32 1 5.0355 7.3026 1.7371 33 1 4.1428 7.3999 3.3165 34 1 6.1784 4.2636 3.6105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334082352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:26 Heat of formation + Delta-G solvation = -118.410494 kcal Electronic energy + Delta-G solvation = -21196.488745 eV Core-core repulsion = 17710.246822 eV Total energy + Delta-G solvation = -3486.241923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38723 -39.46314 -38.28199 -36.40982 -35.43582 -34.67725 -31.70125 -30.45836 -28.56717 -27.70835 -26.22106 -24.79263 -22.36016 -20.34032 -19.39804 -19.26275 -17.33445 -17.07982 -16.64226 -16.26718 -16.05526 -15.53841 -15.33526 -15.23031 -14.45459 -14.17822 -14.02727 -13.06788 -12.87170 -12.63451 -12.42392 -12.35975 -11.74557 -11.71428 -11.38725 -11.34526 -11.30556 -11.06471 -10.84727 -10.61576 -10.52509 -9.87762 -9.83307 -9.66718 -9.09858 -8.95598 -8.70116 -8.07742 -6.61295 -4.10907 2.67525 3.01595 3.12601 3.13624 3.39267 3.55246 3.62199 3.91333 3.99918 4.23511 4.41721 4.86924 4.95120 5.14075 5.52489 5.64745 5.65323 5.73179 5.87951 5.90251 5.98570 6.11715 6.21693 6.34535 6.41622 6.57753 6.63959 7.13675 7.22800 7.38230 7.49702 8.10928 8.55769 8.86284 9.02883 9.23958 9.64323 10.45822 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.006464 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.809643 B = 4330.977465 C = 5621.449926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.486 3.514 4 O -0.500 6.500 5 C 0.156 3.844 6 N -0.427 5.427 7 C -0.340 4.340 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.867 5.867 11 Si 0.926 3.074 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.468 3.532 16 O -0.604 6.604 17 C -0.126 4.126 18 C 0.155 3.845 19 H 0.107 0.893 20 C -0.180 4.180 21 C 0.527 3.473 22 O -0.525 6.525 23 N -0.734 5.734 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.274 0.726 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 0.758 1.900 2.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.293 6.293 3 C 0.327 3.673 4 O -0.385 6.385 5 C 0.030 3.970 6 N -0.145 5.145 7 C -0.467 4.467 8 H 0.123 0.877 9 C -0.166 4.166 10 N -0.504 5.504 11 Si 0.752 3.248 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.258 3.742 16 O -0.491 6.491 17 C -0.167 4.167 18 C 0.050 3.950 19 H 0.125 0.875 20 C -0.220 4.220 21 C 0.312 3.688 22 O -0.400 6.400 23 N -0.393 5.393 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.593 0.979 2.504 2.753 hybrid contribution 0.101 -0.289 -1.093 1.135 sum -0.493 0.689 1.411 1.646 Atomic orbital electron populations 1.22938 0.78642 1.01851 1.01651 1.86455 1.21736 1.35484 1.85670 1.23928 0.92254 0.80573 0.70573 1.90507 1.66507 1.36365 1.45090 1.20478 0.87274 0.85666 1.03582 1.43401 1.56783 1.08067 1.06221 1.19599 1.35077 1.09806 0.82237 0.87727 1.25234 0.94729 0.96933 0.99739 1.69830 1.22614 1.29781 1.28207 0.86008 0.79543 0.78902 0.80340 1.19706 1.20864 1.19705 1.20046 0.82285 0.88151 0.83742 1.90549 1.56145 1.70458 1.31934 1.21661 1.03925 0.95705 0.95378 1.22226 0.88327 0.91403 0.93016 0.87525 1.24036 0.96824 0.98107 1.03064 1.22192 0.86038 0.82738 0.77831 1.90721 1.34767 1.65971 1.48537 1.48904 1.24327 1.07819 1.58238 0.89589 0.93129 0.92589 0.85916 0.90053 0.91509 0.87578 0.89163 0.86804 0.87030 0.75770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.38 -7.87 10.57 -39.26 -0.41 -8.29 16 3 C 0.49 11.59 6.13 36.00 0.22 11.81 16 4 O -0.50 -13.31 15.79 -18.75 -0.30 -13.61 16 5 C 0.16 3.56 5.14 -5.19 -0.03 3.53 16 6 N -0.43 -9.96 2.18 -116.10 -0.25 -10.21 16 7 C -0.34 -7.91 9.15 -14.94 -0.14 -8.05 16 8 H 0.11 2.24 6.55 -52.48 -0.34 1.89 16 9 C 0.04 0.91 4.90 -17.47 -0.09 0.83 16 10 N -0.87 -21.40 9.24 55.50 0.51 -20.89 16 11 Si 0.93 18.25 29.60 -169.99 -5.03 13.22 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 C 0.47 10.24 7.42 -10.98 -0.08 10.16 16 16 O -0.60 -14.32 15.47 5.55 0.09 -14.24 16 17 C -0.13 -2.14 4.11 -27.88 -0.11 -2.25 16 18 C 0.16 2.27 4.02 -67.23 -0.27 2.00 16 19 H 0.11 1.65 7.74 -51.92 -0.40 1.25 16 20 C -0.18 -2.13 7.92 -27.13 -0.21 -2.35 16 21 C 0.53 8.06 9.85 -10.14 -0.10 7.96 16 22 O -0.52 -9.81 18.03 5.56 0.10 -9.71 16 23 N -0.73 -10.93 7.26 -57.37 -0.42 -11.35 16 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.12 2.80 6.34 -51.93 -0.33 2.47 16 28 H 0.08 1.74 7.61 -51.93 -0.40 1.34 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.11 1.73 8.10 -51.93 -0.42 1.31 16 31 H 0.09 1.46 7.70 -51.93 -0.40 1.06 16 32 H 0.11 1.17 8.01 -51.93 -0.42 0.76 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.40 5.88 8.96 -40.82 -0.37 5.51 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -31.31 300.51 -4.82 -36.13 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.90 Total: 8.97 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 0.26 Total: 25.45 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.16 Total: -42.45 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.52 Total: -45.85 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.31 -4.82 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334082352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.282 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds