Wall clock time and date at job start Mon Mar 30 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99983 * 2 1 4 4 C 1.50701 * 109.47285 * 270.00300 * 3 2 1 5 5 H 1.07996 * 119.99696 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00010 * 179.97438 * 4 3 2 7 7 N 1.31527 * 119.99979 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00313 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46604 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.47373 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47104 * 300.00532 * 8 6 4 12 12 C 1.34777 * 120.00249 * 180.02562 * 2 1 3 13 13 O 1.21552 * 120.00180 * 184.45988 * 12 2 1 14 14 C 1.47847 * 119.99875 * 4.46305 * 12 2 1 15 15 C 1.40026 * 120.55377 * 307.64929 * 14 12 2 16 16 C 1.38356 * 118.28560 * 180.02562 * 15 14 12 17 17 C 1.38348 * 119.30403 * 0.27948 * 16 15 14 18 18 N 1.31927 * 121.08011 * 359.42380 * 17 16 15 19 19 C 1.31696 * 121.87605 * 0.59174 * 18 17 16 20 20 C 1.50705 * 119.71362 * 179.72495 * 19 18 17 21 21 F 1.39903 * 109.47037 * 119.97847 * 20 19 18 22 22 F 1.39902 * 109.46744 * 239.97419 * 20 19 18 23 23 H 1.09003 * 109.46482 * 273.16271 * 1 2 3 24 24 H 1.08995 * 109.47347 * 33.16238 * 1 2 3 25 25 H 1.08997 * 109.47337 * 153.17176 * 1 2 3 26 26 H 1.08998 * 109.46803 * 30.00692 * 3 2 1 27 27 H 1.08998 * 109.47012 * 150.00440 * 3 2 1 28 28 H 0.96999 * 119.99644 * 180.02562 * 7 6 4 29 29 H 1.08002 * 120.85839 * 0.02562 * 15 14 12 30 30 H 1.07998 * 120.34768 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.46131 * 179.70206 * 17 16 15 32 32 H 1.08993 * 109.47563 * 359.97366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.1387 3.5951 -4.1333 10 1 4.1792 4.7038 -3.4337 11 1 4.2392 2.3833 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1688 0.0813 14 6 1.4031 -2.4456 -0.1007 15 6 0.3475 -2.7298 0.7744 16 6 -0.3083 -3.9405 0.6391 17 6 0.0994 -4.8255 -0.3430 18 7 1.0940 -4.5283 -1.1573 19 6 1.7491 -3.3893 -1.0682 20 6 2.8818 -3.1026 -2.0201 21 9 2.5915 -1.9490 -2.7564 22 9 4.0623 -2.9082 -1.2949 23 1 -0.3632 0.0567 1.0262 24 1 -0.3634 0.8602 -0.5621 25 1 -0.3634 -0.9170 -0.4638 26 1 1.6084 2.0283 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4444 -0.8502 29 1 0.0530 -2.0223 1.5353 30 1 -1.1273 -4.1938 1.2959 31 1 -0.4076 -5.7733 -0.4477 32 1 3.0075 -3.9454 -2.6997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334735334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:05 Heat of formation + Delta-G solvation = -86.365248 kcal Electronic energy + Delta-G solvation = -21221.879199 eV Core-core repulsion = 17625.939347 eV Total energy + Delta-G solvation = -3595.939852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.53823 -46.51310 -40.60976 -38.51788 -34.94986 -33.16064 -32.52715 -31.95002 -27.96820 -26.78377 -25.99452 -24.41171 -22.89712 -22.12239 -19.25088 -17.68123 -17.48211 -16.83706 -16.70331 -16.48711 -15.99160 -15.32740 -15.21929 -14.45027 -14.28371 -13.86533 -13.71092 -13.30116 -13.21429 -12.84908 -12.72511 -12.31708 -12.16258 -12.08850 -11.84852 -11.21803 -11.12143 -10.90202 -10.58474 -10.14044 -10.04167 -9.90903 -9.64022 -9.37646 -9.01385 -8.40450 -7.71541 -6.02123 -4.06404 0.60350 0.91900 3.14854 3.35563 3.39526 3.42366 3.43886 3.50172 3.83952 4.29792 4.42938 4.47745 4.59276 4.72511 4.84552 5.06343 5.23251 5.28532 5.32301 5.34780 5.55281 5.77661 5.81173 5.82924 6.14364 6.26756 6.97883 7.40053 7.47982 7.55641 7.94380 8.23427 8.27829 8.83017 9.01121 9.58499 11.06160 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.006704 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.158150 B = 4175.897943 C = 4704.377514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.540 3.460 13 O -0.507 6.507 14 C -0.122 4.122 15 C -0.052 4.052 16 C -0.158 4.158 17 C 0.105 3.895 18 N -0.462 5.462 19 C 0.087 3.913 20 C 0.322 3.678 21 F -0.184 7.184 22 F -0.171 7.171 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 -15.188 1.910 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.321 5.321 3 C 0.128 3.872 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.324 3.676 13 O -0.383 6.383 14 C -0.128 4.128 15 C -0.079 4.079 16 C -0.178 4.178 17 C -0.053 4.053 18 N -0.171 5.171 19 C -0.052 4.052 20 C 0.267 3.733 21 F -0.165 7.165 22 F -0.152 7.152 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.192 -15.521 1.353 18.089 hybrid contribution -0.258 1.046 -0.255 1.107 sum -9.450 -14.475 1.098 17.321 Atomic orbital electron populations 1.21789 0.81506 1.02663 1.00552 1.48072 1.06177 1.07427 1.70407 1.19366 0.92627 0.77398 0.97847 1.21396 1.36644 1.06300 0.92164 0.92230 1.24915 0.95261 0.96335 0.97467 1.69928 1.38405 1.14368 1.30791 0.86555 0.78410 0.77796 0.84696 1.20253 1.21184 1.20018 1.17925 0.87411 0.82965 0.79317 1.90867 1.12487 1.86387 1.48547 1.21208 0.97086 0.97387 0.97094 1.21888 0.92058 0.96866 0.97047 1.22202 1.01251 0.94463 0.99883 1.22854 0.92459 0.99408 0.90562 1.67259 1.07077 1.17473 1.25260 1.21749 0.96990 0.90572 0.95924 1.19998 0.79894 0.86805 0.86639 1.93105 1.93474 1.52881 1.77070 1.93150 1.47164 1.95836 1.79006 0.93426 0.90458 0.92564 0.94696 0.93485 0.92670 0.83481 0.83669 0.81735 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 9.20 59.85 0.55 1.82 16 2 N -0.59 -12.80 2.86 -184.08 -0.53 -13.33 16 3 C 0.25 6.51 5.21 -5.19 -0.03 6.49 16 4 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.54 11.82 6.07 -12.33 -0.07 11.75 16 13 O -0.51 -13.23 13.74 5.32 0.07 -13.16 16 14 C -0.12 -2.09 4.75 -104.82 -0.50 -2.59 16 15 C -0.05 -0.65 7.85 -38.87 -0.31 -0.95 16 16 C -0.16 -1.46 10.10 -39.50 -0.40 -1.86 16 17 C 0.11 1.06 11.17 -17.47 -0.20 0.86 16 18 N -0.46 -6.34 10.24 -9.15 -0.09 -6.44 16 19 C 0.09 1.44 6.31 -82.17 -0.52 0.92 16 20 C 0.32 5.64 5.09 36.01 0.18 5.82 16 21 F -0.18 -3.81 16.54 2.25 0.04 -3.77 16 22 F -0.17 -3.53 14.56 2.25 0.03 -3.50 16 23 H 0.05 0.62 7.72 -51.93 -0.40 0.22 16 24 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 25 H 0.06 0.80 5.79 -51.93 -0.30 0.49 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.05 1.40 7.36 -51.93 -0.38 1.02 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.15 1.55 7.00 -52.49 -0.37 1.18 16 30 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.62 8.11 -51.93 -0.42 1.20 16 LS Contribution 287.07 15.07 4.33 4.33 Total: -1.00 -35.46 287.07 -5.24 -40.70 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -3.10 Total: -4.48 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.70 Total: 8.44 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.12 Total: -45.91 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.07 Total: -7.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.46 -5.24 -40.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334735334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.661 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds