Wall clock time and date at job start Mon Mar 30 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99983 * 2 1 4 4 C 1.50701 * 109.47285 * 270.00300 * 3 2 1 5 5 H 1.07996 * 119.99696 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00010 * 179.97438 * 4 3 2 7 7 N 1.31527 * 119.99979 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00313 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46604 * 60.00322 * 8 6 4 10 10 H 1.48500 * 109.47373 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47104 * 300.00532 * 8 6 4 12 12 C 1.34777 * 120.00249 * 180.02562 * 2 1 3 13 13 O 1.21552 * 120.00180 * 184.45988 * 12 2 1 14 14 C 1.47847 * 119.99875 * 4.46305 * 12 2 1 15 15 C 1.40026 * 120.55377 * 307.64929 * 14 12 2 16 16 C 1.38356 * 118.28560 * 180.02562 * 15 14 12 17 17 C 1.38348 * 119.30403 * 0.27948 * 16 15 14 18 18 N 1.31927 * 121.08011 * 359.42380 * 17 16 15 19 19 C 1.31696 * 121.87605 * 0.59174 * 18 17 16 20 20 C 1.50705 * 119.71362 * 179.72495 * 19 18 17 21 21 F 1.39903 * 109.47037 * 119.97847 * 20 19 18 22 22 F 1.39902 * 109.46744 * 239.97419 * 20 19 18 23 23 H 1.09003 * 109.46482 * 273.16271 * 1 2 3 24 24 H 1.08995 * 109.47347 * 33.16238 * 1 2 3 25 25 H 1.08997 * 109.47337 * 153.17176 * 1 2 3 26 26 H 1.08998 * 109.46803 * 30.00692 * 3 2 1 27 27 H 1.08998 * 109.47012 * 150.00440 * 3 2 1 28 28 H 0.96999 * 119.99644 * 180.02562 * 7 6 4 29 29 H 1.08002 * 120.85839 * 0.02562 * 15 14 12 30 30 H 1.07998 * 120.34768 * 180.02562 * 16 15 14 31 31 H 1.08001 * 119.46131 * 179.70206 * 17 16 15 32 32 H 1.08993 * 109.47563 * 359.97366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.1387 3.5951 -4.1333 10 1 4.1792 4.7038 -3.4337 11 1 4.2392 2.3833 -4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1688 0.0813 14 6 1.4031 -2.4456 -0.1007 15 6 0.3475 -2.7298 0.7744 16 6 -0.3083 -3.9405 0.6391 17 6 0.0994 -4.8255 -0.3430 18 7 1.0940 -4.5283 -1.1573 19 6 1.7491 -3.3893 -1.0682 20 6 2.8818 -3.1026 -2.0201 21 9 2.5915 -1.9490 -2.7564 22 9 4.0623 -2.9082 -1.2949 23 1 -0.3632 0.0567 1.0262 24 1 -0.3634 0.8602 -0.5621 25 1 -0.3634 -0.9170 -0.4638 26 1 1.6084 2.0283 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4444 -0.8502 29 1 0.0530 -2.0223 1.5353 30 1 -1.1273 -4.1938 1.2959 31 1 -0.4076 -5.7733 -0.4477 32 1 3.0075 -3.9454 -2.6997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334735334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:05 Heat of formation + Delta-G solvation = -111.986043 kcal Electronic energy + Delta-G solvation = -21222.990201 eV Core-core repulsion = 17625.939347 eV Total energy + Delta-G solvation = -3597.050853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.00075 -48.01305 -41.75760 -40.03110 -36.72338 -34.90738 -33.85721 -33.18420 -29.87573 -28.06072 -27.47339 -25.86096 -24.45935 -23.38775 -20.76729 -18.90118 -18.77686 -18.61928 -18.28950 -18.16209 -17.40100 -16.92435 -16.35930 -16.16079 -15.89150 -15.09621 -15.01657 -14.73413 -14.41901 -14.36269 -14.23225 -14.03161 -13.77144 -13.50866 -13.30430 -13.15955 -12.86223 -12.60223 -12.40483 -12.21737 -11.76920 -11.12307 -10.97094 -10.66005 -10.60787 -10.33207 -9.51530 -8.24900 -6.38734 -0.43477 -0.01941 1.33363 1.38658 1.45471 1.66443 2.18383 2.31292 2.38469 2.53582 3.04799 3.13856 3.27264 3.46735 3.78533 3.89385 3.94154 4.04890 4.23785 4.27949 4.39951 4.59309 4.84134 4.87798 4.94979 4.97491 5.18746 5.46015 5.50875 5.77126 6.02898 6.55201 6.62531 6.69696 7.19070 7.34889 8.82292 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.006704 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.158150 B = 4175.897943 C = 4704.377514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.048 0.952 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.535 3.465 13 O -0.568 6.568 14 C -0.153 4.153 15 C -0.052 4.052 16 C -0.128 4.128 17 C 0.114 3.886 18 N -0.472 5.472 19 C 0.069 3.931 20 C 0.304 3.696 21 F -0.210 7.210 22 F -0.197 7.197 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.001 0.999 28 H 0.268 0.732 29 H 0.166 0.834 30 H 0.201 0.799 31 H 0.215 0.785 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -17.343 1.925 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.328 5.328 3 C 0.141 3.859 4 C -0.582 4.582 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.321 3.679 13 O -0.448 6.448 14 C -0.159 4.159 15 C -0.078 4.078 16 C -0.147 4.147 17 C -0.044 4.044 18 N -0.181 5.181 19 C -0.069 4.069 20 C 0.250 3.750 21 F -0.192 7.192 22 F -0.178 7.178 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.184 0.816 30 H 0.218 0.782 31 H 0.231 0.769 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.461 -17.684 1.371 21.676 hybrid contribution 0.634 1.570 -0.180 1.703 sum -11.827 -16.114 1.190 20.023 Atomic orbital electron populations 1.22072 0.77908 1.03553 1.03095 1.48053 1.08432 1.06010 1.70341 1.18811 0.91256 0.79706 0.96171 1.21624 1.37109 1.06524 0.92917 0.93329 1.25793 0.94789 0.96349 1.01867 1.70034 1.38821 1.14782 1.32904 0.85546 0.78942 0.77413 0.79424 1.18377 1.19815 1.20741 1.18700 0.87078 0.84528 0.77548 1.90813 1.15353 1.87567 1.51023 1.20836 0.99599 0.95229 1.00244 1.22192 0.90596 0.98806 0.96163 1.22773 1.00892 0.91955 0.99116 1.23833 0.90553 1.01013 0.88968 1.67317 1.08205 1.15898 1.26645 1.21447 0.97497 0.91797 0.96183 1.20670 0.79898 0.86713 0.87695 1.93033 1.93646 1.54706 1.77789 1.93083 1.48938 1.95989 1.79774 0.89687 0.91310 0.90133 0.94957 0.98101 0.92293 0.81624 0.78218 0.76888 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 9.20 127.77 1.18 3.52 16 2 N -0.60 -26.78 2.86 -854.58 -2.44 -29.22 16 3 C 0.26 14.60 5.21 85.63 0.45 15.05 16 4 C -0.54 -32.73 9.39 25.60 0.24 -32.48 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.67 5.46 84.65 0.46 1.13 16 7 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 8 Si 0.96 46.75 29.54 68.60 2.03 48.78 16 9 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 12 C 0.53 24.37 6.07 86.79 0.53 24.90 16 13 O -0.57 -31.81 13.74 -3.88 -0.05 -31.86 16 14 C -0.15 -5.15 4.75 -19.99 -0.09 -5.24 16 15 C -0.05 -1.09 7.85 22.73 0.18 -0.92 16 16 C -0.13 -1.58 10.10 22.32 0.23 -1.35 16 17 C 0.11 1.66 11.17 84.70 0.95 2.61 16 18 N -0.47 -11.53 10.24 -182.85 -1.87 -13.40 16 19 C 0.07 2.23 6.31 42.89 0.27 2.50 16 20 C 0.30 11.03 5.09 71.24 0.36 11.39 16 21 F -0.21 -9.17 16.54 44.97 0.74 -8.42 16 22 F -0.20 -8.68 14.56 44.97 0.65 -8.02 16 23 H 0.08 1.99 7.72 -2.39 -0.02 1.97 16 24 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 25 H 0.08 2.10 5.79 -2.39 -0.01 2.09 16 26 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 27 H 0.00 0.06 7.36 -2.39 -0.02 0.04 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.17 2.80 7.00 -2.91 -0.02 2.78 16 30 H 0.20 0.39 8.06 -2.91 -0.02 0.37 16 31 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.16 4.31 8.11 -2.39 -0.02 4.29 16 Total: -1.00 -85.20 287.07 5.23 -79.97 By element: Atomic # 1 Polarization: -3.16 SS G_CDS: 1.15 Total: -2.01 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 4.74 Total: 21.10 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.03 Total: -99.54 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.86 kcal Atomic # 9 Polarization: -17.84 SS G_CDS: 1.40 Total: -16.45 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -85.20 5.23 -79.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334735334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.018 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds