Wall clock time and date at job start Mon Mar 30 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00324 * 2 1 4 4 O 1.20827 * 119.99406 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00212 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.71901 * 22.05985 * 5 3 2 7 7 C 1.52983 * 109.72239 * 142.67472 * 5 3 2 8 8 N 1.45652 * 110.74204 * 166.46279 * 7 5 3 9 9 C 1.46504 * 117.70647 * 158.07647 * 8 7 5 10 10 C 1.33332 * 124.62907 * 338.02856 * 8 7 5 11 11 O 1.21272 * 118.50644 * 184.33839 * 10 8 7 12 12 C 1.50437 * 123.00155 * 4.40133 * 10 8 7 13 13 N 1.47049 * 108.89537 * 347.25570 * 12 10 8 14 14 C 1.34776 * 121.35278 * 222.75945 * 13 12 10 15 15 O 1.21690 * 120.00097 * 186.21606 * 14 13 12 16 16 C 1.46373 * 120.00192 * 6.22312 * 14 13 12 17 17 H 1.08008 * 119.99946 * 359.97438 * 16 14 13 18 18 C 1.40045 * 120.00149 * 180.02562 * 16 14 13 19 19 N 1.30672 * 119.99950 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00065 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47378 * 89.99790 * 20 18 16 22 22 H 1.48502 * 109.47149 * 209.99757 * 20 18 16 23 23 H 1.48503 * 109.46852 * 329.99642 * 20 18 16 24 24 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46764 * 300.00060 * 1 2 3 26 26 H 1.09006 * 109.47286 * 59.99719 * 1 2 3 27 27 H 1.09000 * 109.22005 * 286.77932 * 7 5 3 28 28 H 1.09006 * 109.21795 * 46.15217 * 7 5 3 29 29 H 1.09003 * 109.46527 * 90.00264 * 9 8 7 30 30 H 1.08998 * 109.46837 * 210.00328 * 9 8 7 31 31 H 1.08993 * 109.46993 * 330.00510 * 9 8 7 32 32 H 1.08998 * 109.57109 * 227.42641 * 12 10 8 33 33 H 1.09009 * 109.56767 * 107.07457 * 12 10 8 34 34 H 0.97002 * 119.99988 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9831 0.3445 -0.3863 7 6 4.0216 2.4456 -0.8737 8 7 5.4287 2.7437 -0.6441 9 6 6.1524 3.4647 -1.6942 10 6 6.1049 2.4076 0.4547 11 8 7.2534 2.7811 0.5645 12 6 5.5086 1.5849 1.5642 13 7 4.0531 1.5068 1.3698 14 6 3.1993 1.6427 2.4038 15 8 2.0076 1.4619 2.2365 16 6 3.7054 2.0078 3.7278 17 1 4.7632 2.1680 3.8763 18 6 2.8183 2.1484 4.8022 19 7 1.5386 1.9542 4.6227 20 14 3.4643 2.6137 6.4921 21 1 3.4734 4.0924 6.6287 22 1 2.5874 2.0256 7.5364 23 1 4.8455 2.0930 6.6546 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.8758 2.1887 -1.9229 28 1 3.4247 3.3256 -0.6337 29 1 6.0715 4.5377 -1.5200 30 1 7.2022 3.1720 -1.6785 31 1 5.7217 3.2208 -2.6653 32 1 5.7241 2.0550 2.5237 33 1 5.9339 0.5814 1.5437 34 1 0.9242 2.0512 5.3670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336172999.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:38 Heat of formation + Delta-G solvation = -128.683759 kcal Electronic energy + Delta-G solvation = -22021.165553 eV Core-core repulsion = 18534.478149 eV Total energy + Delta-G solvation = -3486.687405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56280 -39.37926 -37.54184 -35.95937 -35.34701 -34.01408 -32.71284 -30.57102 -28.09725 -27.17673 -26.52864 -25.06525 -24.05703 -21.07142 -19.91215 -18.44382 -17.41790 -17.09081 -16.51648 -16.12614 -15.87048 -15.51800 -15.20246 -14.87480 -14.51928 -14.01541 -13.86533 -13.14530 -13.00964 -12.76000 -12.48422 -12.31610 -12.04276 -11.83297 -11.75937 -11.57701 -11.34197 -11.22433 -11.08214 -10.46631 -10.34394 -9.98010 -9.85630 -9.58380 -9.02749 -8.60850 -7.91118 -7.73095 -6.41560 -4.89550 2.82217 2.92045 2.98649 3.05999 3.14052 3.17059 3.59431 3.91342 4.18275 4.28784 4.77536 4.90305 5.15303 5.30703 5.42029 5.46600 5.49218 5.62699 5.67016 5.82386 5.83315 5.86138 5.98186 6.10496 6.20411 6.43461 6.89785 7.22814 7.26080 7.55819 7.69709 8.01274 8.32098 8.64480 8.79801 8.98166 10.19916 10.48032 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.009288 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.490880 B = 3014.066651 C = 4609.386703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.360 6.360 3 C 0.496 3.504 4 O -0.508 6.508 5 C 0.144 3.856 6 H 0.090 0.910 7 C 0.113 3.887 8 N -0.603 5.603 9 C 0.079 3.921 10 C 0.510 3.490 11 O -0.556 6.556 12 C 0.115 3.885 13 N -0.636 5.636 14 C 0.553 3.447 15 O -0.532 6.532 16 C -0.534 4.534 17 H 0.078 0.922 18 C 0.088 3.912 19 N -0.758 5.758 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -2.293 -9.434 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.277 6.277 3 C 0.340 3.660 4 O -0.396 6.396 5 C 0.038 3.962 6 H 0.108 0.892 7 C -0.011 4.011 8 N -0.336 5.336 9 C -0.063 4.063 10 C 0.298 3.702 11 O -0.435 6.435 12 C -0.011 4.011 13 N -0.380 5.380 14 C 0.362 3.638 15 O -0.414 6.414 16 C -0.570 4.570 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.385 5.385 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.028 -1.926 -9.346 10.011 hybrid contribution 0.087 0.285 0.769 0.825 sum 3.116 -1.641 -8.577 9.271 Atomic orbital electron populations 1.23013 0.76963 1.02185 1.02247 1.86324 1.22925 1.33484 1.84981 1.21938 0.89783 0.81842 0.72438 1.90597 1.66182 1.36145 1.46691 1.20543 0.90027 0.98327 0.87306 0.89187 1.21670 0.81246 0.99167 0.99018 1.47065 1.10839 1.57210 1.18521 1.21701 0.98246 0.96694 0.89707 1.20818 0.86068 0.80164 0.83145 1.90679 1.18330 1.55340 1.79110 1.21684 0.81360 0.99679 0.98370 1.48768 1.05536 1.79366 1.04284 1.18490 0.84731 0.77101 0.83459 1.90563 1.15441 1.56117 1.79313 1.20832 0.94899 1.49819 0.91403 0.90436 1.25741 0.94370 0.92838 1.00455 1.69983 1.02679 1.33700 1.32165 0.86272 0.79725 0.79361 0.80987 1.19538 1.20264 1.18552 0.89412 0.91227 0.93216 0.89921 0.89647 0.92690 0.90335 0.91392 0.85037 0.89310 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 101.05 1.07 1.93 16 2 O -0.36 -7.33 10.38 -44.90 -0.47 -7.79 16 3 C 0.50 10.68 4.24 36.00 0.15 10.83 16 4 O -0.51 -12.37 14.77 -26.31 -0.39 -12.76 16 5 C 0.14 2.68 3.44 -68.67 -0.24 2.45 16 6 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 7 C 0.11 1.78 5.82 -4.51 -0.03 1.76 16 8 N -0.60 -9.49 3.20 -182.79 -0.59 -10.08 16 9 C 0.08 0.97 10.19 59.85 0.61 1.58 16 10 C 0.51 9.16 7.58 -11.75 -0.09 9.07 16 11 O -0.56 -11.04 16.25 5.56 0.09 -10.94 16 12 C 0.12 2.12 6.44 -5.02 -0.03 2.09 16 13 N -0.64 -13.73 2.98 -169.58 -0.51 -14.23 16 14 C 0.55 14.81 7.56 -12.99 -0.10 14.72 16 15 O -0.53 -15.81 11.17 -24.20 -0.27 -16.08 16 16 C -0.53 -14.16 8.89 -35.63 -0.32 -14.48 16 17 H 0.08 1.87 5.77 -52.48 -0.30 1.57 16 18 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 19 N -0.76 -21.56 11.83 55.55 0.66 -20.91 16 20 Si 0.91 19.37 29.56 -169.99 -5.02 14.34 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 26 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 27 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 28 H 0.09 1.54 7.39 -51.93 -0.38 1.16 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.99 7.23 -51.93 -0.38 0.62 16 31 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 32 H 0.13 2.53 5.56 -51.93 -0.29 2.24 16 33 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 34 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -35.07 290.41 -5.02 -40.09 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.83 Total: 1.83 kcal Atomic # 6 Polarization: 31.23 SS G_CDS: 0.93 Total: 32.17 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.43 Total: -45.22 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -1.03 Total: -47.58 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.07 -5.02 -40.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336172999.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.594 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds