Wall clock time and date at job start Mon Mar 30 2020 01:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00324 * 2 1 4 4 O 1.20827 * 119.99406 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00212 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.71901 * 22.05985 * 5 3 2 7 7 C 1.52983 * 109.72239 * 142.67472 * 5 3 2 8 8 N 1.45652 * 110.74204 * 166.46279 * 7 5 3 9 9 C 1.46504 * 117.70647 * 158.07647 * 8 7 5 10 10 C 1.33332 * 124.62907 * 338.02856 * 8 7 5 11 11 O 1.21272 * 118.50644 * 184.33839 * 10 8 7 12 12 C 1.50437 * 123.00155 * 4.40133 * 10 8 7 13 13 N 1.47049 * 108.89537 * 347.25570 * 12 10 8 14 14 C 1.34776 * 121.35278 * 222.75945 * 13 12 10 15 15 O 1.21690 * 120.00097 * 186.21606 * 14 13 12 16 16 C 1.46373 * 120.00192 * 6.22312 * 14 13 12 17 17 H 1.08008 * 119.99946 * 359.97438 * 16 14 13 18 18 C 1.40045 * 120.00149 * 180.02562 * 16 14 13 19 19 N 1.30672 * 119.99950 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 120.00065 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47378 * 89.99790 * 20 18 16 22 22 H 1.48502 * 109.47149 * 209.99757 * 20 18 16 23 23 H 1.48503 * 109.46852 * 329.99642 * 20 18 16 24 24 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46764 * 300.00060 * 1 2 3 26 26 H 1.09006 * 109.47286 * 59.99719 * 1 2 3 27 27 H 1.09000 * 109.22005 * 286.77932 * 7 5 3 28 28 H 1.09006 * 109.21795 * 46.15217 * 7 5 3 29 29 H 1.09003 * 109.46527 * 90.00264 * 9 8 7 30 30 H 1.08998 * 109.46837 * 210.00328 * 9 8 7 31 31 H 1.08993 * 109.46993 * 330.00510 * 9 8 7 32 32 H 1.08998 * 109.57109 * 227.42641 * 12 10 8 33 33 H 1.09009 * 109.56767 * 107.07457 * 12 10 8 34 34 H 0.97002 * 119.99988 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9831 0.3445 -0.3863 7 6 4.0216 2.4456 -0.8737 8 7 5.4287 2.7437 -0.6441 9 6 6.1524 3.4647 -1.6942 10 6 6.1049 2.4076 0.4547 11 8 7.2534 2.7811 0.5645 12 6 5.5086 1.5849 1.5642 13 7 4.0531 1.5068 1.3698 14 6 3.1993 1.6427 2.4038 15 8 2.0076 1.4619 2.2365 16 6 3.7054 2.0078 3.7278 17 1 4.7632 2.1680 3.8763 18 6 2.8183 2.1484 4.8022 19 7 1.5386 1.9542 4.6227 20 14 3.4643 2.6137 6.4921 21 1 3.4734 4.0924 6.6287 22 1 2.5874 2.0256 7.5364 23 1 4.8455 2.0930 6.6546 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.8758 2.1887 -1.9229 28 1 3.4247 3.3256 -0.6337 29 1 6.0715 4.5377 -1.5200 30 1 7.2022 3.1720 -1.6785 31 1 5.7217 3.2208 -2.6653 32 1 5.7241 2.0550 2.5237 33 1 5.9339 0.5814 1.5437 34 1 0.9242 2.0512 5.3670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336172999.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:37 Heat of formation + Delta-G solvation = -154.018584 kcal Electronic energy + Delta-G solvation = -22022.264154 eV Core-core repulsion = 18534.478149 eV Total energy + Delta-G solvation = -3487.786005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09350 -40.91576 -39.32305 -37.55155 -36.96445 -35.62637 -34.72143 -32.07758 -29.52234 -28.64351 -28.36029 -26.37039 -25.55947 -22.82247 -21.53054 -20.03436 -18.97854 -18.70342 -18.08895 -17.89750 -17.36122 -17.01693 -16.83984 -16.35246 -16.11226 -15.68168 -15.37971 -14.73682 -14.53549 -14.11658 -14.03598 -13.91104 -13.58965 -13.25636 -13.12501 -13.06425 -12.88989 -12.80151 -12.71500 -12.32631 -12.04187 -11.58136 -11.39346 -11.26765 -10.98276 -9.92429 -9.87542 -9.44107 -8.38415 -6.94977 1.24263 1.38431 1.40155 1.46234 1.54832 1.63579 2.15938 2.19415 2.33617 2.53373 3.37237 3.41873 3.60976 3.90914 3.94326 4.18390 4.33508 4.35332 4.45631 4.46503 4.57791 4.59651 4.74040 4.76426 4.93076 5.16097 5.29310 5.35801 5.63155 5.85237 6.07366 6.23344 6.78435 6.91608 6.99422 7.11531 8.22816 8.54150 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.009288 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.490880 B = 3014.066651 C = 4609.386703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.366 6.366 3 C 0.493 3.507 4 O -0.543 6.543 5 C 0.138 3.862 6 H 0.126 0.874 7 C 0.122 3.878 8 N -0.600 5.600 9 C 0.076 3.924 10 C 0.510 3.490 11 O -0.578 6.578 12 C 0.115 3.885 13 N -0.639 5.639 14 C 0.539 3.461 15 O -0.575 6.575 16 C -0.560 4.560 17 H 0.095 0.905 18 C 0.035 3.965 19 N -0.810 5.810 20 Si 0.992 3.008 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.245 1.245 24 H 0.128 0.872 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 -2.721 -10.431 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.283 6.283 3 C 0.339 3.661 4 O -0.434 6.434 5 C 0.033 3.967 6 H 0.144 0.856 7 C -0.002 4.002 8 N -0.331 5.331 9 C -0.066 4.066 10 C 0.298 3.702 11 O -0.458 6.458 12 C -0.010 4.010 13 N -0.382 5.382 14 C 0.347 3.653 15 O -0.460 6.460 16 C -0.596 4.596 17 H 0.113 0.887 18 C -0.182 4.182 19 N -0.439 5.439 20 Si 0.811 3.189 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.168 1.168 24 H 0.147 0.853 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.612 -2.366 -10.402 11.622 hybrid contribution -0.432 0.388 0.953 1.116 sum 4.181 -1.977 -9.449 10.520 Atomic orbital electron populations 1.23225 0.75551 1.04583 1.01216 1.86314 1.24460 1.33038 1.84481 1.22555 0.91013 0.81523 0.71035 1.90569 1.67370 1.37346 1.48095 1.20945 0.88233 1.01310 0.86208 0.85618 1.21640 0.80659 0.96888 1.00980 1.47113 1.10766 1.56633 1.18597 1.21938 0.98034 0.96297 0.90288 1.20612 0.85852 0.80182 0.83549 1.90675 1.19182 1.56352 1.79626 1.21788 0.79464 1.01424 0.98360 1.48464 1.06393 1.78533 1.04778 1.18737 0.84776 0.76938 0.84836 1.90537 1.17169 1.57428 1.80892 1.21364 0.96024 1.50022 0.92143 0.88711 1.26883 0.94319 0.92044 1.04961 1.70140 1.04453 1.35547 1.33762 0.85086 0.79694 0.78940 0.75148 1.19202 1.19647 1.16821 0.85346 0.95223 0.91234 0.84998 0.92265 0.92682 0.90610 0.87491 0.86261 0.86518 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.63 10.56 113.37 1.20 2.83 16 2 O -0.37 -14.75 10.38 -46.07 -0.48 -15.23 16 3 C 0.49 21.17 4.24 71.23 0.30 21.47 16 4 O -0.54 -27.01 14.77 29.19 0.43 -26.58 16 5 C 0.14 4.92 3.44 44.09 0.15 5.07 16 6 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 7 C 0.12 3.55 5.82 86.53 0.50 4.05 16 8 N -0.60 -17.27 3.20 -851.43 -2.73 -20.00 16 9 C 0.08 1.61 10.19 127.77 1.30 2.91 16 10 C 0.51 17.39 7.58 87.80 0.67 18.06 16 11 O -0.58 -22.00 16.25 -3.01 -0.05 -22.05 16 12 C 0.11 4.08 6.44 85.45 0.55 4.63 16 13 N -0.64 -27.30 2.98 -808.63 -2.41 -29.71 16 14 C 0.54 29.44 7.56 86.36 0.65 30.09 16 15 O -0.57 -35.37 11.17 23.79 0.27 -35.11 16 16 C -0.56 -30.11 8.89 24.83 0.22 -29.89 16 17 H 0.10 4.57 5.77 -2.91 -0.02 4.56 16 18 C 0.03 1.86 5.50 85.30 0.47 2.33 16 19 N -0.81 -47.68 11.83 21.83 0.26 -47.42 16 20 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 24 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 26 H 0.07 2.07 8.13 -2.38 -0.02 2.05 16 27 H 0.13 2.57 7.84 -2.39 -0.02 2.55 16 28 H 0.06 2.08 7.39 -2.38 -0.02 2.06 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.70 7.23 -2.39 -0.02 1.68 16 31 H 0.11 1.45 7.80 -2.39 -0.02 1.43 16 32 H 0.12 4.54 5.56 -2.39 -0.01 4.52 16 33 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 34 H 0.28 14.83 8.29 -92.71 -0.77 14.06 16 Total: -1.00 -79.60 290.41 4.47 -75.14 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.13 Total: 17.50 kcal Atomic # 6 Polarization: 55.53 SS G_CDS: 6.01 Total: 61.55 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.88 Total: -97.13 kcal Atomic # 8 Polarization: -99.13 SS G_CDS: 0.17 Total: -98.97 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -79.60 4.47 -75.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336172999.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.883 kcal (2) G-P(sol) polarization free energy of solvation -79.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds