Wall clock time and date at job start Mon Mar 30 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99884 * 2 1 4 4 O 1.20828 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00083 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.71539 * 345.18262 * 5 3 2 7 7 C 1.52991 * 109.72236 * 224.57781 * 5 3 2 8 8 N 1.45649 * 110.77529 * 193.55522 * 7 5 3 9 9 C 1.46497 * 117.70197 * 201.91998 * 8 7 5 10 10 C 1.33382 * 124.58719 * 21.90061 * 8 7 5 11 11 O 1.21277 * 118.48771 * 175.70276 * 10 8 7 12 12 C 1.50435 * 123.02344 * 355.67670 * 10 8 7 13 13 N 1.47057 * 108.89192 * 12.71172 * 12 10 8 14 14 C 1.34771 * 121.35223 * 137.27964 * 13 12 10 15 15 O 1.21689 * 119.99915 * 185.00091 * 14 13 12 16 16 C 1.46376 * 120.00286 * 5.00214 * 14 13 12 17 17 H 1.08004 * 119.99719 * 359.97438 * 16 14 13 18 18 C 1.40046 * 119.99935 * 179.97438 * 16 14 13 19 19 N 1.30670 * 120.00342 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99843 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47187 * 90.00096 * 20 18 16 22 22 H 1.48499 * 109.47311 * 209.99962 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00197 * 20 18 16 24 24 H 1.09003 * 109.47126 * 59.99682 * 1 2 3 25 25 H 1.08998 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47290 * 299.99484 * 1 2 3 27 27 H 1.09000 * 109.21359 * 313.89228 * 7 5 3 28 28 H 1.09008 * 109.21816 * 73.21769 * 7 5 3 29 29 H 1.09000 * 109.47235 * 90.00589 * 9 8 7 30 30 H 1.09003 * 109.46845 * 209.99864 * 9 8 7 31 31 H 1.08995 * 109.47343 * 330.00024 * 9 8 7 32 32 H 1.08999 * 109.56489 * 132.53137 * 12 10 8 33 33 H 1.08999 * 109.57268 * 252.76671 * 12 10 8 34 34 H 0.97002 * 120.00003 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9856 0.3035 0.2615 7 6 4.0285 2.3262 1.0103 8 7 5.4338 2.6525 0.8102 9 6 6.1649 3.2354 1.9380 10 6 6.1019 2.4574 -0.3277 11 8 7.2498 2.8424 -0.3978 12 6 5.4972 1.7812 -1.5278 13 7 4.0430 1.6786 -1.3341 14 6 3.1818 1.9428 -2.3365 15 8 1.9833 1.9391 -2.1257 16 6 3.6879 2.2344 -3.6787 17 1 4.7516 2.2381 -3.8656 18 6 2.7929 2.5084 -4.7203 19 7 1.5059 2.5044 -4.4940 20 14 3.4388 2.8812 -6.4330 21 1 3.5598 1.6168 -7.2025 22 1 2.4983 3.7958 -7.1287 23 1 4.7720 3.5271 -6.3295 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.4297 3.2287 0.8884 28 1 3.8904 1.9385 2.0197 29 1 6.6099 2.4383 2.5335 30 1 6.9511 3.8901 1.5618 31 1 5.4777 3.8116 2.5575 32 1 5.7058 2.3691 -2.4216 33 1 5.9237 0.7843 -1.6388 34 1 0.8860 2.6939 -5.2156 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336173001.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:39 Heat of formation + Delta-G solvation = -151.075256 kcal Electronic energy + Delta-G solvation = -22008.722618 eV Core-core repulsion = 18521.064245 eV Total energy + Delta-G solvation = -3487.658373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08809 -40.91956 -39.30231 -37.49219 -36.97867 -35.60710 -34.68738 -32.07742 -29.52089 -28.64033 -28.34715 -26.35286 -25.55534 -22.82817 -21.48236 -20.05449 -19.01369 -18.67249 -18.04949 -17.83601 -17.36805 -17.00581 -16.84180 -16.35705 -16.08458 -15.66476 -15.39455 -14.70520 -14.52069 -14.13839 -14.03006 -13.89715 -13.50605 -13.24725 -13.14039 -13.00682 -12.95019 -12.77334 -12.74292 -12.37165 -12.05166 -11.60850 -11.34588 -11.23301 -10.96522 -9.86228 -9.77956 -9.41405 -8.35319 -6.92750 1.24023 1.39022 1.40376 1.46558 1.55218 1.61566 2.11904 2.20126 2.36544 2.56630 3.40586 3.42616 3.61221 3.91129 3.95828 4.19414 4.32183 4.34979 4.44037 4.45425 4.59146 4.61375 4.72440 4.76793 4.93815 5.17829 5.29448 5.35985 5.60497 5.87642 6.09896 6.23088 6.79961 6.92458 7.02010 7.15353 8.29171 8.56740 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.009115 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.608487 B = 3070.959867 C = 4650.033742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.370 6.370 3 C 0.486 3.514 4 O -0.522 6.522 5 C 0.140 3.860 6 H 0.126 0.874 7 C 0.123 3.877 8 N -0.600 5.600 9 C 0.074 3.926 10 C 0.510 3.490 11 O -0.578 6.578 12 C 0.117 3.883 13 N -0.640 5.640 14 C 0.536 3.464 15 O -0.578 6.578 16 C -0.561 4.561 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.812 5.812 20 Si 0.992 3.008 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.250 1.250 24 H 0.029 0.971 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.072 -4.482 10.275 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.287 6.287 3 C 0.329 3.671 4 O -0.410 6.410 5 C 0.035 3.965 6 H 0.144 0.856 7 C -0.002 4.002 8 N -0.332 5.332 9 C -0.067 4.067 10 C 0.298 3.702 11 O -0.459 6.459 12 C -0.008 4.008 13 N -0.382 5.382 14 C 0.344 3.656 15 O -0.463 6.463 16 C -0.597 4.597 17 H 0.113 0.887 18 C -0.183 4.183 19 N -0.441 5.441 20 Si 0.812 3.188 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.173 1.173 24 H 0.048 0.952 25 H 0.151 0.849 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.558 -3.967 10.301 11.943 hybrid contribution -0.426 0.396 -0.951 1.115 sum 4.132 -3.571 9.350 10.828 Atomic orbital electron populations 1.23270 0.75441 1.04776 1.01334 1.86335 1.24549 1.33049 1.84735 1.22663 0.91116 0.81563 0.71714 1.90602 1.67261 1.37300 1.45833 1.20918 0.88153 1.01039 0.86383 0.85614 1.21618 0.80733 0.97985 0.99818 1.47114 1.10905 1.61894 1.13255 1.21932 0.97623 0.99635 0.87558 1.20637 0.85960 0.78895 0.84722 1.90673 1.19174 1.52445 1.83597 1.21735 0.79545 1.02933 0.96626 1.48417 1.06306 1.74611 1.08906 1.18760 0.85089 0.76730 0.85059 1.90662 1.16601 1.57725 1.81317 1.21404 0.95263 1.51014 0.92004 0.88733 1.26900 0.94348 0.91869 1.05169 1.70161 1.04079 1.35286 1.34587 0.85079 0.79196 0.79090 0.75433 1.18286 1.20127 1.17324 0.95218 0.84946 0.91288 0.92301 0.85022 0.90188 0.91452 0.88857 0.86539 0.86490 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.49 10.56 113.37 1.20 2.69 16 2 O -0.37 -14.37 10.57 -49.82 -0.53 -14.90 16 3 C 0.49 20.74 4.65 71.24 0.33 21.07 16 4 O -0.52 -26.39 13.99 29.75 0.42 -25.97 16 5 C 0.14 4.98 3.43 44.10 0.15 5.14 16 6 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 7 C 0.12 3.53 5.79 86.54 0.50 4.03 16 8 N -0.60 -17.27 3.20 -851.35 -2.73 -20.00 16 9 C 0.07 1.56 10.22 127.77 1.31 2.87 16 10 C 0.51 17.45 7.58 87.79 0.67 18.11 16 11 O -0.58 -22.11 16.18 -3.02 -0.05 -22.16 16 12 C 0.12 4.17 6.31 85.44 0.54 4.71 16 13 N -0.64 -27.44 2.98 -808.62 -2.41 -29.85 16 14 C 0.54 29.51 7.57 86.36 0.65 30.16 16 15 O -0.58 -36.14 10.71 20.82 0.22 -35.92 16 16 C -0.56 -30.33 8.79 24.83 0.22 -30.11 16 17 H 0.09 4.56 5.98 -2.91 -0.02 4.54 16 18 C 0.03 1.81 5.50 85.30 0.47 2.28 16 19 N -0.81 -48.27 11.83 21.83 0.26 -48.02 16 20 Si 0.99 40.07 29.56 68.60 2.03 42.10 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 24 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 25 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 27 H 0.06 2.04 7.47 -2.39 -0.02 2.03 16 28 H 0.13 2.55 8.07 -2.38 -0.02 2.53 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.66 7.10 -2.39 -0.02 1.64 16 31 H 0.09 1.51 8.01 -2.39 -0.02 1.49 16 32 H 0.12 4.47 5.84 -2.39 -0.01 4.46 16 33 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -80.84 290.32 4.38 -76.46 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.13 Total: 17.29 kcal Atomic # 6 Polarization: 54.92 SS G_CDS: 6.03 Total: 60.96 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -4.88 Total: -97.86 kcal Atomic # 8 Polarization: -99.01 SS G_CDS: 0.06 Total: -98.95 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -80.84 4.38 -76.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336173001.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.616 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds