Wall clock time and date at job start Mon Mar 30 2020 01:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00412 * 2 1 4 4 H 1.48502 * 109.47105 * 270.00408 * 3 2 1 5 5 H 1.48502 * 109.46924 * 30.00157 * 3 2 1 6 6 H 1.48502 * 109.47159 * 150.00340 * 3 2 1 7 7 C 1.38655 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99592 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00418 * 179.97438 * 7 2 1 10 10 C 1.35746 * 116.99882 * 174.83934 * 9 7 2 11 11 C 1.38881 * 120.07421 * 3.50488 * 10 9 7 12 12 C 1.38095 * 119.93111 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07337 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.93224 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47097 * 90.00245 * 14 13 12 16 16 C 1.32196 * 120.00317 * 114.61436 * 15 14 13 17 17 C 1.46863 * 121.21158 * 173.97806 * 16 15 14 18 18 C 1.34660 * 118.53525 * 179.97438 * 17 16 15 19 19 N 1.35901 * 121.27452 * 359.97438 * 18 17 16 20 20 H 0.97007 * 118.59931 * 179.97438 * 19 18 17 21 21 C 1.35904 * 122.80100 * 0.02562 * 19 18 17 22 22 C 1.34664 * 121.27643 * 0.02562 * 21 19 18 23 23 C 1.38305 * 120.13437 * 0.24972 * 13 12 11 24 24 C 1.38098 * 120.07036 * 359.45613 * 23 13 12 25 25 H 0.97006 * 119.99598 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.02818 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96023 * 179.97438 * 12 11 10 28 28 H 1.08997 * 109.47429 * 330.00141 * 14 13 12 29 29 H 1.09008 * 109.47220 * 209.99945 * 14 13 12 30 30 H 1.08004 * 120.73174 * 359.95133 * 17 16 15 31 31 H 1.08001 * 119.36351 * 179.72359 * 18 17 16 32 32 H 1.08007 * 119.36117 * 180.02562 * 21 19 18 33 33 H 1.08000 * 120.73231 * 180.02562 * 22 21 19 34 34 H 1.08000 * 119.96487 * 179.70214 * 23 13 12 35 35 H 1.08001 * 120.03692 * 180.27361 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4056 0.1072 11 6 3.2204 -3.5721 0.1388 12 6 3.8503 -4.7960 0.2496 13 6 5.2294 -4.8610 0.3296 14 6 5.9134 -6.1982 0.4509 15 7 6.2109 -6.7177 -0.8862 16 6 7.4661 -6.8657 -1.2737 17 6 7.7970 -7.5045 -2.5541 18 6 9.0937 -7.6269 -2.8957 19 7 10.0835 -7.1730 -2.0825 20 1 11.0045 -7.2816 -2.3669 21 6 9.8379 -6.5742 -0.8875 22 6 8.5803 -6.3972 -0.4395 23 6 5.9818 -3.7007 0.3041 24 6 5.3582 -2.4741 0.1873 25 1 -0.4850 0.8401 0.0004 26 1 2.1433 -3.5220 0.0777 27 1 3.2651 -5.7034 0.2747 28 1 5.2587 -6.8951 0.9741 29 1 6.8418 -6.0820 1.0104 30 1 7.0174 -7.8683 -3.2071 31 1 9.3524 -8.0986 -3.8323 32 1 10.6673 -6.2338 -0.2853 33 1 8.3952 -5.9199 0.5114 34 1 7.0583 -3.7543 0.3715 35 1 5.9465 -1.5687 0.1630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337709841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:13 Heat of formation + Delta-G solvation = 56.789198 kcal Electronic energy + Delta-G solvation = -18858.789353 eV Core-core repulsion = 15823.286673 eV Total energy + Delta-G solvation = -3035.502680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96487 -39.07711 -37.00306 -35.25339 -32.37111 -31.78735 -31.16114 -30.12457 -28.92482 -25.90368 -24.53814 -23.16011 -21.99308 -21.49530 -20.08088 -19.10392 -17.79519 -17.17869 -16.36267 -15.96262 -15.07791 -14.83974 -14.68232 -14.22501 -14.09218 -13.79051 -13.68193 -13.54609 -12.75131 -12.57698 -12.46266 -12.17317 -11.94241 -11.73774 -11.23711 -11.15429 -10.70049 -10.58206 -10.36577 -10.06852 -9.77995 -9.29637 -8.90214 -8.71320 -8.14084 -7.27678 -7.09337 -6.35050 -4.01265 1.46411 1.47979 2.24442 2.33724 2.93875 3.26776 3.29252 3.44440 3.66997 4.29168 4.35624 4.47407 4.66091 4.91869 4.95736 5.13569 5.19540 5.27615 5.51101 5.63442 5.67494 5.79433 5.89940 5.97509 6.14046 6.15410 6.25297 6.44164 6.61165 6.69057 6.91283 6.93694 7.10746 7.14979 7.35878 7.44998 7.71112 7.88879 8.11811 8.32794 9.00563 9.64255 10.72899 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.003433 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.512734 B = 8155.307228 C = 8456.036030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.159 3.841 11 C -0.221 4.221 12 C -0.056 4.056 13 C -0.164 4.164 14 C 0.095 3.905 15 N -0.545 5.545 16 C 0.218 3.782 17 C -0.184 4.184 18 C 0.098 3.902 19 N -0.623 5.623 20 H 0.410 0.590 21 C 0.116 3.884 22 C -0.257 4.257 23 C -0.071 4.071 24 C -0.193 4.193 25 H 0.278 0.722 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.941 -14.404 -3.033 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.125 6.125 10 C 0.107 3.893 11 C -0.240 4.240 12 C -0.075 4.075 13 C -0.165 4.165 14 C -0.034 4.034 15 N -0.259 5.259 16 C 0.038 3.962 17 C -0.211 4.211 18 C -0.027 4.027 19 N -0.231 5.231 20 H 0.243 0.757 21 C -0.011 4.011 22 C -0.286 4.286 23 C -0.089 4.089 24 C -0.212 4.212 25 H 0.089 0.911 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 20.720 -14.112 -3.210 25.274 hybrid contribution 1.063 0.984 0.412 1.506 sum 21.783 -13.128 -2.798 25.586 Atomic orbital electron populations 1.69654 1.05543 1.28360 1.48485 1.24459 0.95019 0.98756 0.95810 0.86180 0.80305 0.81493 0.78906 1.19926 1.20861 1.18402 1.20784 0.76987 0.96632 1.51962 0.87641 1.83565 1.22553 1.25789 1.80627 1.19112 0.91636 0.85507 0.93037 1.21280 1.01039 0.91897 1.09785 1.20650 0.93512 0.96609 0.96702 1.19253 0.93651 0.93251 1.10353 1.20914 0.98398 0.93648 0.90398 1.73206 1.17044 1.20171 1.15453 1.21494 0.89483 0.92538 0.92654 1.21550 0.94719 1.07039 0.97759 1.21329 0.88654 0.97660 0.95061 1.40806 1.09512 1.55127 1.17683 0.75698 1.21323 0.98455 0.94570 0.86703 1.22581 0.92226 1.10384 1.03369 1.20434 0.97952 0.91525 0.99039 1.20135 0.91879 0.97668 1.11555 0.91140 0.84955 0.87207 0.90608 0.93964 0.84019 0.82665 0.83122 0.84273 0.87554 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.96 55.48 0.77 -25.48 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 3 Si 0.91 22.37 28.62 -169.99 -4.86 17.50 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.39 -11.41 9.94 30.89 0.31 -11.10 16 8 H 0.11 3.17 5.43 -52.48 -0.28 2.89 16 9 O -0.22 -6.11 8.59 0.06 0.00 -6.11 16 10 C 0.16 3.94 6.65 -39.10 -0.26 3.68 16 11 C -0.22 -5.20 9.17 -39.40 -0.36 -5.56 16 12 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16 13 C -0.16 -3.15 5.47 -104.58 -0.57 -3.72 16 14 C 0.10 1.58 6.36 -5.20 -0.03 1.54 16 15 N -0.54 -9.32 10.63 -56.96 -0.61 -9.93 16 16 C 0.22 3.05 6.97 -80.73 -0.56 2.49 16 17 C -0.18 -1.99 10.29 -37.36 -0.38 -2.37 16 18 C 0.10 0.65 11.13 -17.02 -0.19 0.46 16 19 N -0.62 -3.26 5.22 -13.14 -0.07 -3.33 16 20 H 0.41 0.58 8.88 -40.82 -0.36 0.22 16 21 C 0.12 0.81 11.13 -17.01 -0.19 0.62 16 22 C -0.26 -2.84 9.40 -37.36 -0.35 -3.19 16 23 C -0.07 -1.35 9.69 -39.61 -0.38 -1.74 16 24 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 25 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.13 3.23 5.62 -52.49 -0.30 2.94 16 27 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 29 H 0.04 0.62 5.29 -51.92 -0.27 0.34 16 30 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 32 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.14 1.53 6.05 -52.49 -0.32 1.21 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -35.30 305.74 -7.64 -42.94 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.63 Total: 3.07 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.85 Total: -23.27 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.10 Total: -38.74 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.00 Total: -6.11 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.30 -7.64 -42.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337709841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.729 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds