Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00412 * 2 1 4 4 H 1.48502 * 109.47105 * 270.00408 * 3 2 1 5 5 H 1.48502 * 109.46924 * 30.00157 * 3 2 1 6 6 H 1.48502 * 109.47159 * 150.00340 * 3 2 1 7 7 C 1.38655 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99592 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00418 * 179.97438 * 7 2 1 10 10 C 1.35746 * 116.99882 * 174.83934 * 9 7 2 11 11 C 1.38881 * 120.07421 * 3.50488 * 10 9 7 12 12 C 1.38095 * 119.93111 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07337 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.93224 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47097 * 90.00245 * 14 13 12 16 16 C 1.32196 * 120.00317 * 114.61436 * 15 14 13 17 17 C 1.46863 * 121.21158 * 173.97806 * 16 15 14 18 18 C 1.34660 * 118.53525 * 179.97438 * 17 16 15 19 19 N 1.35901 * 121.27452 * 359.97438 * 18 17 16 20 20 H 0.97007 * 118.59931 * 179.97438 * 19 18 17 21 21 C 1.35904 * 122.80100 * 0.02562 * 19 18 17 22 22 C 1.34664 * 121.27643 * 0.02562 * 21 19 18 23 23 C 1.38305 * 120.13437 * 0.24972 * 13 12 11 24 24 C 1.38098 * 120.07036 * 359.45613 * 23 13 12 25 25 H 0.97006 * 119.99598 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.02818 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96023 * 179.97438 * 12 11 10 28 28 H 1.08997 * 109.47429 * 330.00141 * 14 13 12 29 29 H 1.09008 * 109.47220 * 209.99945 * 14 13 12 30 30 H 1.08004 * 120.73174 * 359.95133 * 17 16 15 31 31 H 1.08001 * 119.36351 * 179.72359 * 18 17 16 32 32 H 1.08007 * 119.36117 * 180.02562 * 21 19 18 33 33 H 1.08000 * 120.73231 * 180.02562 * 22 21 19 34 34 H 1.08000 * 119.96487 * 179.70214 * 23 13 12 35 35 H 1.08001 * 120.03692 * 180.27361 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4056 0.1072 11 6 3.2204 -3.5721 0.1388 12 6 3.8503 -4.7960 0.2496 13 6 5.2294 -4.8610 0.3296 14 6 5.9134 -6.1982 0.4509 15 7 6.2109 -6.7177 -0.8862 16 6 7.4661 -6.8657 -1.2737 17 6 7.7970 -7.5045 -2.5541 18 6 9.0937 -7.6269 -2.8957 19 7 10.0835 -7.1730 -2.0825 20 1 11.0045 -7.2816 -2.3669 21 6 9.8379 -6.5742 -0.8875 22 6 8.5803 -6.3972 -0.4395 23 6 5.9818 -3.7007 0.3041 24 6 5.3582 -2.4741 0.1873 25 1 -0.4850 0.8401 0.0004 26 1 2.1433 -3.5220 0.0777 27 1 3.2651 -5.7034 0.2747 28 1 5.2587 -6.8951 0.9741 29 1 6.8418 -6.0820 1.0104 30 1 7.0174 -7.8683 -3.2071 31 1 9.3524 -8.0986 -3.8323 32 1 10.6673 -6.2338 -0.2853 33 1 8.3952 -5.9199 0.5114 34 1 7.0583 -3.7543 0.3715 35 1 5.9465 -1.5687 0.1630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337709841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = 31.428782 kcal Electronic energy + Delta-G solvation = -18859.889063 eV Core-core repulsion = 15823.286673 eV Total energy + Delta-G solvation = -3036.602390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96073 -40.60355 -38.68987 -36.37798 -34.48874 -32.67270 -32.21271 -31.82202 -30.16251 -27.67119 -26.10656 -23.95517 -23.67189 -22.68754 -21.49803 -19.86484 -19.66039 -19.12417 -17.18569 -16.86326 -16.63230 -16.38105 -15.98355 -15.67702 -15.49090 -15.35210 -14.85328 -14.70786 -14.40968 -14.19992 -14.10577 -13.62463 -13.13384 -13.01745 -12.77097 -12.56959 -12.39912 -12.27387 -11.98964 -11.46975 -11.30804 -10.93002 -10.41449 -9.86389 -9.82314 -8.97111 -8.51592 -8.03201 -6.24880 0.51700 0.55995 0.75909 0.78037 1.29598 1.35291 1.51008 2.27345 2.41433 2.71718 2.84743 3.01187 3.12195 3.75047 3.95972 3.98996 4.07678 4.20992 4.30649 4.39883 4.45763 4.57712 4.62370 4.73221 4.86834 4.94327 5.02551 5.21161 5.32655 5.35431 5.43187 5.54593 5.71202 5.75652 5.85126 5.87730 6.20298 6.25491 6.64930 6.81998 7.40656 7.55145 8.60386 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.003433 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.512734 B = 8155.307228 C = 8456.036030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.403 4.403 8 H 0.077 0.923 9 O -0.242 6.242 10 C 0.119 3.881 11 C -0.235 4.235 12 C -0.066 4.066 13 C -0.143 4.143 14 C 0.104 3.896 15 N -0.625 5.625 16 C 0.219 3.781 17 C -0.242 4.242 18 C 0.143 3.857 19 N -0.600 5.600 20 H 0.436 0.564 21 C 0.154 3.846 22 C -0.309 4.309 23 C -0.064 4.064 24 C -0.188 4.188 25 H 0.286 0.714 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.205 0.795 32 H 0.199 0.801 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.743 -15.214 -3.844 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.094 0.906 9 O -0.150 6.150 10 C 0.070 3.930 11 C -0.255 4.255 12 C -0.085 4.085 13 C -0.144 4.144 14 C -0.026 4.026 15 N -0.343 5.343 16 C 0.044 3.956 17 C -0.269 4.269 18 C 0.015 3.985 19 N -0.208 5.208 20 H 0.275 0.725 21 C 0.026 3.974 22 C -0.337 4.337 23 C -0.083 4.083 24 C -0.207 4.207 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.141 0.859 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.222 0.778 32 H 0.216 0.784 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 26.608 -14.974 -4.043 30.798 hybrid contribution -0.244 0.823 0.532 1.010 sum 26.363 -14.151 -3.512 30.126 Atomic orbital electron populations 1.69740 1.06983 1.29696 1.50089 1.25334 0.95935 1.02289 0.95330 0.85164 0.78759 0.77045 0.79382 1.18938 1.18903 1.18626 1.20720 0.78163 0.96155 1.52930 0.90557 1.83503 1.21203 1.27136 1.83168 1.19603 0.93132 0.85005 0.95256 1.21260 1.00094 0.93156 1.10944 1.20858 0.94814 0.95928 0.96893 1.19825 0.93051 0.95469 1.06064 1.20770 0.98665 0.91418 0.91716 1.73237 1.19163 1.26289 1.15638 1.22148 0.89686 0.90155 0.93568 1.21623 0.96749 1.10746 0.97788 1.21945 0.87234 0.93655 0.95658 1.41149 1.10954 1.52096 1.16638 0.72483 1.21935 0.98361 0.90682 0.86456 1.22552 0.93036 1.14032 1.04070 1.20847 0.99874 0.90228 0.97305 1.20477 0.90468 0.99541 1.10185 0.90473 0.87371 0.85896 0.91454 0.92061 0.85033 0.77833 0.78407 0.84703 0.83601 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.46 13.96 21.61 0.30 -57.15 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 47.18 28.62 68.60 1.96 49.14 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.40 -25.28 9.94 67.92 0.68 -24.60 16 8 H 0.08 5.06 5.43 -2.91 -0.02 5.04 16 9 O -0.24 -14.11 8.59 -22.71 -0.19 -14.30 16 10 C 0.12 6.17 6.65 22.58 0.15 6.32 16 11 C -0.24 -11.88 9.17 22.39 0.21 -11.67 16 12 C -0.07 -2.87 9.69 22.25 0.22 -2.66 16 13 C -0.14 -5.52 5.47 -19.84 -0.11 -5.63 16 14 C 0.10 3.43 6.36 85.63 0.54 3.98 16 15 N -0.63 -21.73 10.63 -334.14 -3.55 -25.29 16 16 C 0.22 5.89 6.97 43.61 0.30 6.19 16 17 C -0.24 -4.77 10.29 23.71 0.24 -4.52 16 18 C 0.14 1.13 11.13 83.24 0.93 2.06 16 19 N -0.60 -2.30 5.22 -195.48 -1.02 -3.32 16 20 H 0.44 -2.21 8.88 -92.70 -0.82 -3.03 16 21 C 0.15 1.24 11.13 83.24 0.93 2.17 16 22 C -0.31 -5.82 9.40 23.71 0.22 -5.60 16 23 C -0.06 -2.37 9.69 22.25 0.22 -2.15 16 24 C -0.19 -8.05 9.99 22.39 0.22 -7.83 16 25 H 0.29 16.18 8.31 -92.70 -0.77 15.41 16 26 H 0.11 5.89 5.62 -2.91 -0.02 5.88 16 27 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 28 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 29 H 0.06 1.72 5.29 -2.38 -0.01 1.71 16 30 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.21 -0.28 8.06 -2.91 -0.02 -0.30 16 32 H 0.20 -0.16 8.06 -2.91 -0.02 -0.19 16 33 H 0.14 2.59 6.05 -2.91 -0.02 2.57 16 34 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -85.27 305.74 3.01 -82.26 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.31 Total: 11.57 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 5.21 Total: -42.91 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -4.27 Total: -85.76 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.19 Total: -14.30 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.96 Total: 49.14 kcal Total: -85.27 3.01 -82.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337709841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.686 kcal (2) G-P(sol) polarization free energy of solvation -85.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds